KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:24 2014 Check: 00 .. Name: bmy_12875T0/1-921 Len: 1217 Check: 4023 Weight: 1.00 Name: ENSBTAP00000010553/1-1085 Len: 1217 Check: 3856 Weight: 1.00 Name: ENSP00000309198/1-1083 Len: 1217 Check: 7867 Weight: 1.00 Name: BACU000749/1-968 Len: 1217 Check: 6662 Weight: 1.00 Name: ENSTTRP00000000482/1-1084 Len: 1217 Check: 7843 Weight: 1.00 // 1 50 bmy_12875T0/1-921 MQTY-----A KPRLKI---- ---------- ---------- ---------- ENSBTAP00000010553/1-1085 MFSFEGDFKT RPKVSLGGAS RKEEKASLLH RTQEERRKRE EERRRLKNAI ENSP00000309198/1-1083 MFSFEGDFKT RPKVSLGGAS RKEEKASLLH RTQEERRKRE EERRRLKNAI BACU000749/1-968 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000482/1-1084 MFSFEGDFKT RPKVSLGGAS RKEEKASLLH RTQEERRKRE EERRRLKNAI 51 100 bmy_12875T0/1-921 ---------- ----TYSIQR SAFDRHASLS QPGGTFSIAS GPNLTLLNED ENSBTAP00000010553/1-1085 IIQSFIRGYR DRKQQCSIQR SAFDRCASLS QSGGAFPLAS GPNLTLL--- ENSP00000309198/1-1083 IIQSFIRGYR DRKQQYSIQR SAFDRCATLS QSGGAFPIAN GPNLTLL--- BACU000749/1-968 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000482/1-1084 IIQSFIRGYR DRKQQYSIQR SAFDRRAGLS QSGGAFSIAS GPTLTLL--- 101 150 bmy_12875T0/1-921 SKRLGNFEYK KQQATLLCCP RYPVCTDSTL FCTEPSTLCL HPCDVHPQYH ENSBTAP00000010553/1-1085 VRQLLFFYRQ SEDSKRLIWM YQNLIKHSAL FVQQLEGSER LTC------- ENSP00000309198/1-1083 VRQLLFFYKQ NEDSKRLIWL YQNLIKHSSL FVKQLDGSER LTC------- BACU000749/1-968 ---------- ---------M YQNLIKYSSL FVQQLDGSER LTC------- ENSTTRP00000000482/1-1084 VRQLLFFYKQ NEDSKRLIWM YQNLIKYSSL FVQQLDGSER LTC------- 151 200 bmy_12875T0/1-921 SLLPVLMLSV MRNGQTWSTA TWGSEGPSVL SLQSTLPFGE LLVPRSEVWS ENSBTAP00000010553/1-1085 ------LFQI KR-------- --------LM SLCCR----- ---------- ENSP00000309198/1-1083 ------LFQI KR-------- --------LM SLCCR----- ---------- BACU000749/1-968 ------LFQI KR-------- --------LM SLCCR----- ---------- ENSTTRP00000000482/1-1084 ------LFQI KR-------- --------LM SLCCR----- ---------- 201 250 bmy_12875T0/1-921 AAPAWFLDVL QPPSPTGPVL LQNCNDDSLN VALPMRMLEV FSSENTYLPV ENSBTAP00000010553/1-1085 ---------- ---------L LQSCNDDSLN VALPMRMLEV FSSEDTYLPV ENSP00000309198/1-1083 ---------- ---------L LQNCNDDSLN VALPMRMLEV FSSENTYLPV BACU000749/1-968 ---------- ---------L LQNCNDDSLN VALPMRMLEV FSSESTYLPV ENSTTRP00000000482/1-1084 ---------- ---------L LQNCNDDSLN VALPMRMLEV FSSENTYLPV 251 300 bmy_12875T0/1-921 LQDASYVVSV IEQILHYMIQ NGYYRSLYLL INSKLPSSIE YSDLSRVPIA ENSBTAP00000010553/1-1085 LQDASYVVSV IEQILHYMIQ NGYYRSLYLL INSKLPSSIE YSDLSRVPIA ENSP00000309198/1-1083 LQDASYVVSV IEQILHYMIH NGYYRSLYLL INSKLPSSIE YSDLSRVPIA BACU000749/1-968 LQDASYVVSV IEQILHYMIQ NGYYRSLYLL INSKLPSSIE YSDLSRVPIA ENSTTRP00000000482/1-1084 LQDAGYVVSV IEQILHYMIQ NGYYRSLYLL INSKLPSSIE YSDLSRVPIA 301 350 bmy_12875T0/1-921 KILLENVLKP LHFTYNSCPE GARQQVFTAF TKEVLAAPFT EQVFHFVIPA ENSBTAP00000010553/1-1085 KILLENVLKP LHFTYNSCPE GARQQVFTAF TKEVLAAPFT EQIFHFVIPA ENSP00000309198/1-1083 KILLENVLKP LHFTYNSCPE GARQQVFTAF TEEFLAAPFT DQIFHFIIPA BACU000749/1-968 KILLENVLKP LHFTYNSCPE GARQQVFTAF TKEVLAAPFT EQVFHFVIPA ENSTTRP00000000482/1-1084 KILLENVLKP LHFTYNSCPE GARQQVFTAF TKEVLAAPFT EQVFHFVIPA 351 400 bmy_12875T0/1-921 LADVQTVFPY EPFLNALLSI EGPRSKTSGG APWLFYFVLT VGENYLGTLS ENSBTAP00000010553/1-1085 LADARTVFPY EPFLTALLSL EGRRPATSGG APWLFYFVLT VGDNYLGALS ENSP00000309198/1-1083 LADAQTVFPY EPFLNALLLI ESRCSRKSGG APWLFYFVLT VGENYLGALS BACU000749/1-968 VADVQTVFPY EPFLNALLSI EAPRSKTSGG APWLFYFVLT VGENYLGTLS ENSTTRP00000000482/1-1084 LADVQTVFPY EPFLNALLSI EGPRSKTSGG APWLFYFVLT VGENYLGTLS 401 450 bmy_12875T0/1-921 EEGLLVYLRV LQTLLSQLPV SPANTSCQDS ASDSEDESG- ETDTQTSAPE ENSBTAP00000010553/1-1085 EDGLLAHLRV LQALLSQLPV SPARASGQDA ASDSDEEEGE EADRPASTPE ENSP00000309198/1-1083 EEGLLVYLRV LQTFLSQLPV SPASASCHDS ASDSEEESE- EADKPSS-PE BACU000749/1-968 EEGLLVYLRV LQTLLSQLPV SPANTSCQDS ASDSEDESG- ETDTQTSAPE ENSTTRP00000000482/1-1084 EEGLLVYLSV LQTLLSRLPV SPANTSCQDS ASDSEDESG- ETDTQTSAPE 451 500 bmy_12875T0/1-921 DGRLSVPYIT EECLKKLDTK QQTNTLLNLV WRDSASEEAF TLMAAICHTL ENSBTAP00000010553/1-1085 DGRLSVLYIA EECLKKLDTK QQTNTLLSLV WRDSASEEAF TLMAAICHTL ENSP00000309198/1-1083 DGRLSVSYIT EECLKKLDTK QQTNTLLNLV WRDSASEEVF TTMASVCHTL BACU000749/1-968 DGRLSVPYIT EECLKKLDTK QQTNTLLNLV WRDSASEEAF TLMAAICHTL ENSTTRP00000000482/1-1084 DGRLSVPYIT EECLKKLDTK QQTNTLLNLV WRDSASEEAF TLMAAICHTL 501 550 bmy_12875T0/1-921 MVQHRVMASL QFSLQCQVSE TPLVSHIFY- -DNTDDHRVY GTIAS----- ENSBTAP00000010553/1-1085 MVQHRVLVPR ARLLYSLAFN ARFLRHLWFL ISSMTTRMIT GSMVPLLQVI ENSP00000309198/1-1083 MVQHRMMVPK VRLLYSLAFN ARFLRHLWFL ISSMSTRMIT GSMVPLLQVI BACU000749/1-968 MVQHRVMVPK ARLLYSLAFN ARFLRHLWFL ISSMTTRMIT GSMVPLLQVI ENSTTRP00000000482/1-1084 MVQHRVMVPK ARLLYSLAFN ARFLRHLWFL ISSMTTRMIT GSMVPLLQVI 551 600 bmy_12875T0/1-921 ---------D SSRIIPLFYL FSSLFSHSLI SIHDNEFFGD PIDVVGQRQS ENSBTAP00000010553/1-1085 SRGSPMSFED SSRIIPLFYL FSSLFSHSLI SIHDNEFFGD PIEVVGQRQS ENSP00000309198/1-1083 SRGSPMSFED SSRIIPLFYL FSSLFSHSLI SIHDNEFFGD PIEVVGQRQS BACU000749/1-968 SRGSPMSFED SSRIIPLFYL FSSLFSHSLI SIHDNEFFGD PIEVVGQRQS ENSTTRP00000000482/1-1084 SRGSPMSFED SSRIIPLFYL FSSLFSHSLI SIHDNEFFGD PIEVVGQRQS 601 650 bmy_12875T0/1-921 SMMPFTLEEL IMLSRCLRDA CLGIIKLAYP ETKPEVREEY IIAFQSIGVT ENSBTAP00000010553/1-1085 SMMPFTLEEL VVLSRCLRDA CLGIIKLAYP ETKPEVREEY ITAFQSIGVT ENSP00000309198/1-1083 SMMPFTLEEL IMLSRCLRDA CLGIIKLAYP ETKPEVREEY ITAFQSIGVT BACU000749/1-968 SMMPFTLEEL IMLSRCLRDA CLGIIKLAYP ETKPEVREEY IIAFQSIGVT ENSTTRP00000000482/1-1084 SMMPFTLEEL IMLSRCLRDA CLGIIKLAYP ETKPEVREEY IIAFQSIGVT 651 700 bmy_12875T0/1-921 TNSEMQRCIQ MEQKRWVQLF KFEKLLRKVI FILHLPPFKA LFLHCLHVSF ENSBTAP00000010553/1-1085 TSSEMQQCIQ MEQKRWIQLF K--------- ---------- ---------- ENSP00000309198/1-1083 TSSEMQQCIQ MEQKRWIQLF K--------- ---------- ---------- BACU000749/1-968 TNSEMQQCIQ MEQKRWIQLF K--------- ---------- ---------- ENSTTRP00000000482/1-1084 TNSEMQQCIQ MEQKRWIQLF K--------- ---------- ---------- 701 750 bmy_12875T0/1-921 INCPKKRSYE LPWLECWQET TTTENRTTGV EKKKRKRVIT NLVKMLKSRD ENSBTAP00000010553/1-1085 ---------- ---------- ---------- -------VIT NLVKMLKSRD ENSP00000309198/1-1083 ---------- ---------- ---------- -------VIT NLVKMLKSRD BACU000749/1-968 ---------- ---------- ---------- -------VIT NLVKMLKSRD ENSTTRP00000000482/1-1084 ---------- ---------- ---------- -------VIT NLVKMLKSRD 751 800 bmy_12875T0/1-921 ARRNFCPPNH WLSEQEDIKA DK-------- ---------- ---------- ENSBTAP00000010553/1-1085 TRRNFCPPNH WLSEQEDIKA DKVTQLYVPA SRNAWRFRRM GRIGPLRSTL ENSP00000309198/1-1083 TRRNFCPPNH WLSEQEDIKA DKVTQLYVPA SRHVWRFRRM GRIGPLQSTL BACU000749/1-968 ARRNFCPPNH WLSEQEDIKA DKVTQLYVPA SRSAWRFRRM GRIGPLRSTL ENSTTRP00000000482/1-1084 ARRKFCPPNH WLSEQEDIKA DKVTQLYVPA SRSAWRFRRM GRIGPLRSTL 801 850 bmy_12875T0/1-921 ---------- ---------- ---------- ----IFQRLI YADKQEVQGD ENSBTAP00000010553/1-1085 DVGLESPPLS VSEERQLAIL TQLPFVVPFE ERVKIFQRLI YADKQEVQGD ENSP00000309198/1-1083 DVGLESPPLS VSEERQLAVL TELPFVVPFE ERVKIFQRLI YADKQEVQGD BACU000749/1-968 DVGLESPPLS VSEERQLAIL TELPFVVPFE ERVKIFQRLI YADKQEVQGD ENSTTRP00000000482/1-1084 DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXIFQRLI YADKQEVQGD 851 900 bmy_12875T0/1-921 GPFLDGINVT IRRNYIYEDA YDKLSPENEP DLKKRIRVHL LNAHGLDEAG ENSBTAP00000010553/1-1085 GPFLDGINVT IRRNYIYEDA YDKLSPENEP DLKKRIRVHL LNAHGLDEAG ENSP00000309198/1-1083 GPFLDGINVT IRRNYIYEDA YDKLSPENEP DLKKRIRVHL LNAHGLDEAG BACU000749/1-968 GPFLDGINVT IRRNYIYEDA YDKLSPENEP DLKKRIRVHL LNAHGLDEAG ENSTTRP00000000482/1-1084 GPFLDGINVT IRRNYIYEDA YDKLSPENEP DLKKRIRVHL LNAHGLDEAG 901 950 bmy_12875T0/1-921 IDGGGIFREF LNELLKSGFN PNQGFFKTTN EGLLYPNPAA QMLVGESFAR ENSBTAP00000010553/1-1085 IDGGGIFREF LNELLKSGFN PNQGFFKTTN EGLLYPNPAA QMLVGDAFAR ENSP00000309198/1-1083 IDGGGIFREF LNELLKSGFN PNQGFFKTTN EGLLYPNPAA QMLVGDSFAR BACU000749/1-968 IDGGGIFREF LNELLKSGFN PNQGFFKTTN EGLLYPNPAA QMLVGESFAR ENSTTRP00000000482/1-1084 IDGGGIFREF LNELLKSGFN PNQGFFKTTN EGLLYPNPAA QMLVGESFAR 951 1000 bmy_12875T0/1-921 HYYFLGRMLG KLL------- ---------- LL-------- ---------- ENSBTAP00000010553/1-1085 HYYFLGRMLG KALYENMLVE LPFAGFFLSK LLGTSADVDI HHLASLDPEV ENSP00000309198/1-1083 HYYFLGRMLG KALYENMLVE LPFAGFFLSK LLGTSADVDI HHLASLDPEV BACU000749/1-968 HYYFLGRMLG KALYENMLVE LPFAGFFLSK LLGTSADVDI HHLASLDPEV ENSTTRP00000000482/1-1084 HYYFLGRMLG KALYENMLVE LPFAGFFLSK LLGTSADVDI HHLASLDPEV 1001 1050 bmy_12875T0/1-921 ---IISVKSF T------GMS FPCC------ --LWLLSPGA E--------- ENSBTAP00000010553/1-1085 YRNLLFLKSY EGDVEELGLN FTVVNNDLGE AQVVELKSGG KDIPVTSANR ENSP00000309198/1-1083 YKNLLFLKSY EDDVEELGLN FTVVNNDLGE AQVVELKFGG KDIPVTSANR BACU000749/1-968 YKNLLFLKSY EGDVEELGLN FTVVNNDLGE AQVVELKPGG KDIPVSSANR ENSTTRP00000000482/1-1084 YKNLLFLKSY EGDVEELGLN FTVVNNDLGE AQVVELKFGG KDIPVSSANR 1051 1100 bmy_12875T0/1-921 LSSAEVCAAG PFPGHVCQPC CGTR------ ------RQPD HK-------G ENSBTAP00000010553/1-1085 IAYIHLVADY RLNRQIRPHC LAFRQGLANV VSLEWLRMFD QQEIQVLISG ENSP00000309198/1-1083 IAYIHLVADY RLNRQIRQHC LAFRQGLANV VSLEWLRMFD QQEIQVLISG BACU000749/1-968 IAYIHLVADY RLNRQIRRHC LAFRQGLANV ARLEWLRMFD QQEIQVLISG ENSTTRP00000000482/1-1084 IAYIHLVADY RLNRQIRQHC LAFRQGLANV VSLEWLRMFD QQEIQVLISG 1101 1150 bmy_12875T0/1-921 PVCPM----M KSW------- ------LFIL W-VVQNH--- ---------- ENSBTAP00000010553/1-1085 AQVPISLEDL KSFTNYSGGY SAEHPVIKVF WRVVEGFTDE EKRKLLKFVT ENSP00000309198/1-1083 AQVPISLEDL KSFTNYSGGY SADHPVIKVF WRVVEGFTDE EKRKLLKFVT BACU000749/1-968 AQVPISLEDL KSFTNYSGGY SADHPVIRVF WRVVEGFTDE EKRKLLKFVT ENSTTRP00000000482/1-1084 AQVPISLEDL KSFTNYSGGY SADHPVIRVF WRVVEGFTDE EKRKLLKFVT 1151 1200 bmy_12875T0/1-921 ---------- -------CVQ Q--------- -MAEVTDLVH F--------- ENSBTAP00000010553/1-1085 SCSRPPLLGF KELYPAFCIH NGGSDLERLP TASTCMNLLK LPEFQDEALL ENSP00000309198/1-1083 SCSRPPLLGF KELYPAFCIH NGGSDLERLP TASTCMNLLK LPEFYDETLL BACU000749/1-968 SCSRPPLLGF KELYPAFCIH NGGSDLERLP TASTCMNLLK LPEFQDEALL ENSTTRP00000000482/1-1084 SCSRPPLLGF KELYPAFCIH NGGSDLERLP TASTCMNLLK LPEFQDEALL 1201 1250 bmy_12875T0/1-921 ---------- ------- ENSBTAP00000010553/1-1085 RSKLLYAIEC AAGFELS ENSP00000309198/1-1083 RSKLLYAIEC AAGFELS BACU000749/1-968 RSKLLYAIEC AAGFELS ENSTTRP00000000482/1-1084 RSKLLYAIEC AAGFELS