KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:25 2014 Check: 00 .. Name: bmy_08042T0/1-514 Len: 563 Check: 9236 Weight: 1.00 Name: ENSP00000081029/1-323 Len: 563 Check: 6409 Weight: 1.00 Name: ENSBTAP00000010567/1-325 Len: 563 Check: 6488 Weight: 1.00 Name: BACU006111/1-374 Len: 563 Check: 2095 Weight: 1.00 Name: ENSTTRP00000011798/1-323 Len: 563 Check: 4241 Weight: 1.00 // 1 50 bmy_08042T0/1-514 MGAGKMGQKP LQQLALKDGK EVLGICEVVS GAIVRAAQKL KEYLGFEDTL ENSP00000081029/1-323 ---------- ---------- ---------- ----MAAAAL PAWLSLQ--- ENSBTAP00000010567/1-325 ---------- ---------- ---------- ----MAAPSL PAWLALQ--- BACU006111/1-374 ---------- ---------- ---------- ----MAAARL PACLVLQ--- ENSTTRP00000011798/1-323 ---------- ---------- ---------- ----MAAARF PACLVLQ--- 51 100 bmy_08042T0/1-514 SNLCPAPNTL NEIFLIHFIT FCHEKGVDNW LTTTKMTKYQ ALLFGADWIW ENSP00000081029/1-323 ----SRARTL RA-------- ---------- ---------- ---------- ENSBTAP00000010567/1-325 ----TRARTL RA-------- ---------- ---------- ---------- BACU006111/1-374 ----PRARTL RA-------- ---------- ---------- ---------- ENSTTRP00000011798/1-323 ----PRARSL RA-------- ---------- ---------- ---------- 101 150 bmy_08042T0/1-514 TFWGSNKQIR LQLAVQTLQM SPLPPVESEP CDPSNPESRA EGSFSNRSRF ENSP00000081029/1-323 ---------- FSTAVYSAT- -PVP------ -TPSLPER-- ---------- ENSBTAP00000010567/1-325 ---------- FSTAVSPVTG AQRL------ -SPPTTER-- ---------- BACU006111/1-374 ---------- FSTSVSPATR SPRP------ -SPSTTER-- ---------- ENSTTRP00000011798/1-323 ---------- FSTSVSLATR SPRP------ -SPS--ER-- ---------- 151 200 bmy_08042T0/1-514 DKLEEFCNLI GEDCLGLFII FGVPGKPKDI RGVVLDSIKR ETVRGHLPGG ENSP00000081029/1-323 ---------- ---------- --TPGNERPP R--------- ---------- ENSBTAP00000010567/1-325 ---------- ---------- --TSKHERAP R--------- ---------- BACU006111/1-374 ---------- ---------- --TSRYERPL R--------- ---------- ENSTTRP00000011798/1-323 ---------- ---------- --TSRYGRPL R--------- ---------- 201 250 bmy_08042T0/1-514 TAVARFILET EDCVFIRELL GNCLSKKDGL REALPPRTEK MAVDQDWPSV ENSP00000081029/1-323 ---------- ---------- ---------- RKALPPRTEK MAVDQDWPSV ENSBTAP00000010567/1-325 ---------- ---------- ---------- RKALPPRTEK MSVDQDWPSV BACU006111/1-374 ---------- ---------- ---------- RKALPPRTEK MAVDQDWPSV ENSTTRP00000011798/1-323 ---------- ---------- ---------- RKALPPRTEK MAVDQDWPSV 251 300 bmy_08042T0/1-514 YPVAAPFKPS AVPLPVRMGY PVKRGVPMAK EGNLELLKVR TSLFVFLLSP ENSP00000081029/1-323 YPVAAPFKPS AVPLPVRMGY PVKKGVPMAK EGNLELLKIP NFLHL----- ENSBTAP00000010567/1-325 YPVAAPFKPS AVPLPVRMGY PVKRGVPMAK EGNLELLKIP NFLHL----- BACU006111/1-374 YPVAAPFKPS AVPLPVRMGY PVKRGVPMAK EGNLELLKIP NFLHL----- ENSTTRP00000011798/1-323 YPVAAPFKPS AVPLPVRMGY PVKRGVPMAK EGNLELLKIP NFLHL----- 301 350 bmy_08042T0/1-514 SGSEVTSKKH ELLEGSFKDF CTEWPAALDS DEKCRKHFPI EIDTAAYVSA ENSP00000081029/1-323 --TPVAIKKH ---CEALKDF CTEWPAALDS DEKCEKHFPI EIDSTDYVSS ENSBTAP00000010567/1-325 --TPVAIKKH ---CEALKDF CTEWPAALDS DEKCEKHFPI EIDTADYISS BACU006111/1-374 --TPVAIKKH ---CEALKDF CTEWPAALDS DEKCRKHFPI EIDTAAYVSA ENSTTRP00000011798/1-323 --TPVAIKKH ---CEALKDF CTEWPAALDS DEKCRKHFPI EIDTAGYVSA 351 400 bmy_08042T0/1-514 GPSIRNPKAR VVTLRVKLSS LNLDDHAKKK LIKLVGDRYC KSTDVLTIKT ENSP00000081029/1-323 GPSVRNPRAR VVVLRVKLSS LNLDDHAKKK LIKLVGERYC KTTDVLTIKT ENSBTAP00000010567/1-325 GPSIRNPKAR VVTLRVKLSS LNLDDHAKKK LIKLVGDRYC KSTDVLTIKT BACU006111/1-374 GPSIRNPKAR VVTLRVKLSS LNLDDHAKKK LIKLVGDRYC KSTDVLTIKT ENSTTRP00000011798/1-323 GPSIRNPKAR VVTLRVKLSS LNLDDHAKKK LIKLVGDRYC KSTDVLTIKT 401 450 bmy_08042T0/1-514 DRCPLKRQNY DYAMYLLTVL YHESW----- ---------- ---------- ENSP00000081029/1-323 DRCPLRRQNY DYAVYLLTVL YHESW----- ---------- ---------- ENSBTAP00000010567/1-325 DRCPLKRQNY DYAMYLLTVL YHESW----- ---------- ---------- BACU006111/1-374 DRCPLKRQNY DYAMYLLTVL YHESWRHVTE INTVSFQLSY LEPQKFEMFD ENSTTRP00000011798/1-323 DRCPLKRQNY DYAMYLLTVL YHESW----- ---------- ---------- 451 500 bmy_08042T0/1-514 ---------- ---------- ----KTEEWE KKKTEADMEE YVWKDSSSEK ENSP00000081029/1-323 ---------- ---------- ----NTEEWE KSKTEADMEE YIWENSSSER ENSBTAP00000010567/1-325 ---------- ---------- ----KTEEWE KKKTEADMEE YVWKDSASEK BACU006111/1-374 VLEFREWKVA GSEFSASFGK QYCCKTEEWE KKKTEADMEE YVWKDSSSEK ENSTTRP00000011798/1-323 ---------- ---------- ----KTEEWE KKKTEADMEE YVWKDSSSEK 501 550 bmy_08042T0/1-514 NILETLLQIK AAEKNLELSK EELLGTKEVG EYRKSVVSLK NEGDNENTLS ENSP00000081029/1-323 NILETLLQMK AAEKNMEINK EELLGTKEIE EYKKSVVSLK NEEENENSIS ENSBTAP00000010567/1-325 NILETLFQIK AAEKNTELSK EELLSTKEVE DYKNSVVSLK NEGDNENTIS BACU006111/1-374 NILETLLQIK AAEKNLELSK EELLGTKEVE EYRKSVVSLK NEGDNENTLS ENSTTRP00000011798/1-323 NILETLLQIK AAEKDLELSK EELLGTEEVE EYRKSVVSLK NEGDNENTLS 551 600 bmy_08042T0/1-514 QYKESVKRLL NLT ENSP00000081029/1-323 QYKESVKRLL NVT ENSBTAP00000010567/1-325 QYKESVKRLL HLM BACU006111/1-374 QYKESVKRLL NLM ENSTTRP00000011798/1-323 QYKESVKRLL NLT