KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:27 2014 Check: 00 .. Name: ENSP00000318690/1-781 Len: 904 Check: 9693 Weight: 1.00 Name: ENSBTAP00000010591/1-788 Len: 904 Check: 4148 Weight: 1.00 Name: ENSTTRP00000013361/1-780 Len: 904 Check: 4537 Weight: 1.00 Name: BACU005535/1-846 Len: 904 Check: 7988 Weight: 1.00 Name: bmy_18798T0/1-637 Len: 904 Check: 3852 Weight: 1.00 // 1 50 ENSP00000318690/1-781 MAHRPKRTFR QRAADSSDSD GAEESPAEPG A--PRELPVP GSAEEEPPSG ENSBTAP00000010591/1-788 MAHRPKRTFR PRRADSSDSD GAQETFAEPG A--TGEQAAR DPAVEGPPSG ENSTTRP00000013361/1-780 MAHRPKRTFW QRRADSSDSD STQEPFAEPG AXXXXXXXXX XXXXXXXXXX BACU005535/1-846 -----MQTWA LRRKGCRLEE AAQKRRNYHA GPGVGAAAGS GPVPGTPRER bmy_18798T0/1-637 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000318690/1-781 GGRAQVAGLP HRVRGPRGRG RV-------- ---------- ---------- ENSBTAP00000010591/1-788 RGHAEVAELL RRGRG-RRRG RA-------- ---------- ---------- ENSTTRP00000013361/1-780 XXXXXXXXXX XXXXXX---- ---------- ---------- ---------- BACU005535/1-846 LRAWTEARTS QVTRGSRVGA RVGVWGGWGK SPRGSLKVST TLCQPRTTMN bmy_18798T0/1-637 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000318690/1-781 ---------- ---------- ---------- ---------- --------WA ENSBTAP00000010591/1-788 ---------- ---------- ---------- ---------- --------WA ENSTTRP00000013361/1-780 ---------- ---------- ---------- ---------- --------XX BACU005535/1-846 RGDTCLRTLA CCLHLRIGPL GGVEIIILQG LGLSVFALSD KPSPIIYSFS bmy_18798T0/1-637 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000318690/1-781 SSRRATKAAP RADEGSE--- -SRTLDVSTD EEDKIHHSSE SKDDQGLSSD ENSBTAP00000010591/1-788 SSRHAARAAP RLDESSDVPE -SRMVDLSAD EEDGEHHSSE SKDDQSSSPN ENSTTRP00000013361/1-780 XXXXXXXXXX XXXXXXXXXX XSRAVDLSTD EEDGTHRSSE SKDDQSSSSN BACU005535/1-846 AALYAYEEPK SSQKSLKIPD TPRAVDLSTD EEDGTHHSSE SKDDQSSSSN bmy_18798T0/1-637 ---------- ---------- ---------- EEDGTHRSSE SKDDQSSSSN 201 250 ENSP00000318690/1-781 SSSSLGEKEL SSTVKIPDAA FIQAARRKRE LARAQDDYIS LDVQHTSSIS ENSBTAP00000010591/1-788 SSRTL-EDEF SSVVNIPDAA VMQATYRKCK LARAQEDYIS LDVKHTFTNS ENSTTRP00000013361/1-780 SSSSL-EEEF TSLVNIPDAA FIQAAYRKRE LARAQEDYIS LDVKHAFTIS BACU005535/1-846 SSSSL-EEEF TSLVNIPDAA FIQAAYRKRE LARAQEDYIS LDVKHAFTIS bmy_18798T0/1-637 SSSSL-EEEF TSLVNIPDAA FIQAAYRKRE LARAQEDYIS LDVKHGFTIS 251 300 ENSP00000318690/1-781 GMKRESEDDP ESEPDDHEKR IPFTLRPQTL RQRMAEESIS RNEETSEESQ ENSBTAP00000010591/1-788 GMKKNSE-DS ESEPDDFKDI MPFTPKPQTL RQRMAEETTT RNEETSDDSQ ENSTTRP00000013361/1-780 GVKKNTE-YP ESEPDDHENI IPFTPKPQTL RQ-MAETTAT RNEETSEDSE BACU005535/1-846 GMRKNTE-YP ESEPDDHENI IPFTPKLQTL RQKMAEET-A RNEETSEDSE bmy_18798T0/1-637 GMRKSTE-YP ESEPDDHENI IPFTPKLQTL RQKMAEETDV CFLNFS---- 301 350 ENSP00000318690/1-781 ED-EKQDTWE QQQMRKAVKI IEERDIDLSC GNGSSKVKKF DTSISFPPVN ENSBTAP00000010591/1-788 DE-KTQDIWE QQQMRKAVKI TKGQDIDLSY SHESQTVKKF DASISFPPVS ENSTTRP00000013361/1-780 EDKKYQDIWE QQQMRRAVKI TKGRDIDLSH SSESQTVKKF DASISFPPVN BACU005535/1-846 EDKKYQDIWE QQQMRKAVKI TKGRDIDLSH SSESQTVKKF DASISFPPVN bmy_18798T0/1-637 ---------- ---------- LKGRDIDLSH SSESQTVKKF DASISFPPVN 351 400 ENSP00000318690/1-781 LEIIKKQLNT RLTLLQETHR SHLREYEKYV QDVKSSKSTI QNLESSSNQA ENSBTAP00000010591/1-788 LEIIKKKLNT RLTLLQDTHR SHLREYEKYI QDIKSSKSTI QNLENSSNQT ENSTTRP00000013361/1-780 LEIIKKQLNT RLTLLQDTHR SHLREYEKYI QDVKSSKSTI QNLENSSNQV BACU005535/1-846 LEIIKKQLNT RLTLLQDTHR SHLREYEKYI QDVKSSKSTI QNLENSSNQV bmy_18798T0/1-637 LEIIKKQLNT RLTLLQDTHR SHLREYEKYI QDVKSSKSTI QNLENSSNQV 401 450 ENSP00000318690/1-781 LNCKFYKSMK IYVENLIDCL NEKIINIQEI ESSMHALLLK QAMTFMKRRQ ENSBTAP00000010591/1-788 LSFRFYKSMK IYVENLIDCL NEKIISIQEI ESAMHALLLK QAMIFMKRRQ ENSTTRP00000013361/1-780 LNFKFYKSMK VYVENLIDCL DKKIINIQEI ESAMHALLVK QAMIFMKRRQ BACU005535/1-846 LNFKFYKSMK VYVDNLIDCL NKKIINIQEI ESAMHALLVK QAMIFMKRRQ bmy_18798T0/1-637 LNFKFYKSMK VYVDNLIDCL NKKIINIQEI ESAMHALLVK QAMIFMKRRQ 451 500 ENSP00000318690/1-781 DELKHESTYL QQLSRKDETS TSGNFSVDEK TQWILEEIES R--------- ENSBTAP00000010591/1-788 DELKHESAYL QQLSCKPETS INKSLAMDEK TQWILEEAES RR-------- ENSTTRP00000013361/1-780 DELKHESAYL QQLSRKAETS TNRSLAIDEK TQWILEEIES R--------- BACU005535/1-846 DELKHESAYL QQLSRKAEMS TNRSLAIDEK TQWILEEIES RRSYLFFIWF bmy_18798T0/1-637 DELKHESAYL QQLSRKAEMS TNRSLAIDEK TQWNLEEIES R--------- 501 550 ENSP00000318690/1-781 ------RTKR RQARVLSGNC NHQEGTSSDD ELPSAEMIDF QKSQGDILQK ENSBTAP00000010591/1-788 -FIAKYRARR RQARVLSGNC THEEGTSSDD ELSSADMIDF QKSQGDILQD ENSTTRP00000013361/1-780 ------RAQR RQARVLSGNC THQEGTSSDD ELPSADMMDF QKSQGDILRD BACU005535/1-846 WFIAKYRARR RQARVLSGNC THQEGTSSDD EL-SSDMIDF QKSQGDILQD bmy_18798T0/1-637 ------RARR RKARVLSGNC THQEGTSSDD EL-SSDMIDF QKSQGDILQD 551 600 ENSP00000318690/1-781 QKKVFEEVQD DFCNIQNILL KFQQWREKFP DSYYEAFISL CIPKLLNPLI ENSBTAP00000010591/1-788 HKKIFEDVHS DFCNIQNILL KFRQWREKFP DSYYEAFISL CIPKLLNPLI ENSTTRP00000013361/1-780 HKKIFEDVHD DFCNIQNILL KFQQWREKFP DSYYEAFISL CIPKLLNPLI BACU005535/1-846 HKKIFEDVHD DFCNIQNILL KFQQWREKFP DSYYEAFISL CIPKLLNPLI bmy_18798T0/1-637 HKKIFEDVHD DFCNIQNILL KFQQWREKFP DSYYEAFISL CIPKLLHPLI 601 650 ENSP00000318690/1-781 RVQLIDWNPL KL-------- ---------- -----ESTGL KEMPWFKSVE ENSBTAP00000010591/1-788 RFQLIDWNPL KF-------- ---------- -----DSIGL KQMPWFTSIE ENSTTRP00000013361/1-780 RFQLIDWNPL KF-------- ---------- -----DSIGL KQMPWFTSIE BACU005535/1-846 RFQLIDWNPL KSCMPLGSVL GPCSVHSLGA KLIPKKVVGL KQMPWFTSIE bmy_18798T0/1-637 RFQLIDWNPL KF-------- ---------- -----DSIGL KQMPWFTSIE 651 700 ENSP00000318690/1-781 EFMDSSVEDS KKESSSDKKV LSAIINKTII PRLTDFVEFL WDPLSTSQTT ENSBTAP00000010591/1-788 EFIDCSMEDS KKEDSSDKKI LSTVINKTVI PRLIGFVEFI WDPLSTTQTT ENSTTRP00000013361/1-780 EFIDSSMEDS KKEDSSDKKI LSTVISKTII PRLTDFVEFI WDPLSTSQTT BACU005535/1-846 EFIDSSMEDS KKEDSSDKKI LSTVISKTII PRLTDFVEFI WDPLSTSQTT bmy_18798T0/1-637 EFIDSSMEDS KKEDSSDKKI LSTVISKTII PRLTDFVEFI WDPLSTSQTT 701 750 ENSP00000318690/1-781 SLITHCRVIL EEHSTCENEV -SKSRQDLLK SIVSRMKKAV EDDVFIPLYP ENSBTAP00000010591/1-788 SLVTQCRMIL EEHSTCENEV -NKGKQDLLK SIVSRMKKAI EDDVFIPLYP ENSTTRP00000013361/1-780 NLITQSRMIF EEHSTCENEV ISKGKQDLLK PIVSRMKKAI DDDVFIPLYP BACU005535/1-846 NLITQSRMIL EEHSTCENEV ISKGKQ---- ---------- ---------- bmy_18798T0/1-637 NLITQSRMIL EEHSICENEV ISKGKQDLLK PIVSRMKKAI DDDVFIPLYP 751 800 ENSP00000318690/1-781 KSAVENKTSP HSKFQERQFW SGLKLFRNIL LWNGLLTDDT LQELGLGKLL ENSBTAP00000010591/1-788 KSAVENRTSP HSKFQERQFW SGLKLFGNIL LWNELLPEDT LQELGLGKLL ENSTTRP00000013361/1-780 ESAVENRMSP HSKFQERQFW SGLKLFRNIL LWNELLPEDT LQELGLGKLL BACU005535/1-846 ---------- ---------- ----LFRNIL LWNELLPEDT LQELGLGKLL bmy_18798T0/1-637 ESAVENRMSP HSKFQERQFW SGLKLFRNIL LWNELLPEDT LQELGLGKLL 801 850 ENSP00000318690/1-781 NRYLIIALLN ATPGPDVVKK CNQVAACLPE KWFENSAMRT SIPQLENFIQ ENSBTAP00000010591/1-788 NRYLIIALLN AIPGSDVVKK CSQIAAYLPE KWFQNSAMRT SIPQLENFIQ ENSTTRP00000013361/1-780 NRYLIIALLN AIPGPDVVKK CNQIAACLPE KWFQNSAMRT SIPQLENFIQ BACU005535/1-846 NRYLIIALLN AIPGPDVVKK CNQIAACLPE KWFQNSAMRT SFPHLENFIQ bmy_18798T0/1-637 NRYLIIALLN AIPGPDVVKK CNQ------- ---------- ----LENFIQ 851 900 ENSP00000318690/1-781 FLLQSAHKLS RSEFRDEVEE IILILVKIKA LNQAESFIGE HHLDHLKSLI ENSBTAP00000010591/1-788 FLLQSARKLS RNEIRDELKE IILILVKIKA LNQAESFIEE CHLDHLRSVI ENSTTRP00000013361/1-780 FLLQSARKLS TSEIRDEVKE IILILVKIKA LNQAESFIEE YHLDHLKSVI BACU005535/1-846 FLLQSARKLS TSEIRDEVKE IILILVKIKA LNQAESFIEE YHLDHLKSVI bmy_18798T0/1-637 FLLQSARKLS TSEIRDEVKE IILILVKIKA LNQAESFIEE YHLDHLKSVI 901 950 ENSP00000318690/1-781 KED- ENSBTAP00000010591/1-788 KEFE ENSTTRP00000013361/1-780 EEV- BACU005535/1-846 KEV- bmy_18798T0/1-637 KEV-