KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:29 2014 Check: 00 .. Name: bmy_01463T0/1-367 Len: 447 Check: 8228 Weight: 1.00 Name: ENSP00000301765/1-355 Len: 447 Check: 692 Weight: 1.00 Name: ENSBTAP00000010607/1-350 Len: 447 Check: 8199 Weight: 1.00 Name: BACU005406/1-346 Len: 447 Check: 9977 Weight: 1.00 Name: ENSTTRP00000000036/1-345 Len: 447 Check: 8972 Weight: 1.00 // 1 50 bmy_01463T0/1-367 MAGAGSEARF AGLSLVQLNE LLEDEGQLTE MVQKMEERSS WGESFSRSWD ENSP00000301765/1-355 ------METL KDKTLQELEE LQNDSEAIDQ LALESPE--- ---------- ENSBTAP00000010607/1-350 ------METL KDKTLEELEE MQNDPEAIDR LAQDSPE--- ---------- BACU005406/1-346 ------METL KDKTLEELEE MQNDPAAIDR LAQDFPE--- ---------- ENSTTRP00000000036/1-345 ------METL KDKTLEELEE MQNDPAAIER LAQDFPE--- ---------- 51 100 bmy_01463T0/1-367 KARPAGLKER KCSRSLRTGT ASKLEIGAGV GTGAAAQPNG SCCGGPGGGA ENSP00000301765/1-355 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010607/1-350 ---------- ---------- ---------- ---------- ---------- BACU005406/1-346 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000036/1-345 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_01463T0/1-367 RGSHAGSHHP VWSLQTRNIQ LNKEMTLASN RSLAEGSLLY RPQLDSLKAR ENSP00000301765/1-355 ---------- -----VQDLQ LEREMALATN RSLAERNLEF QGPLEISRSN ENSBTAP00000010607/1-350 ---------- -----VQDLQ LEREMALATN RSLAERNLEF QGPLEISRSN BACU005406/1-346 ---------- -----VQDLQ LEREMALATN RSLAEQNLEF QGPLEISRSN ENSTTRP00000000036/1-345 ---------- -----VQDLQ LEREMALATN RSLAEQNLEF QGPLEISRSN 151 200 bmy_01463T0/1-367 LTQKYQDLQG LFEAYHIKKT KLDQQSSSAS LETLLALLQA EGAKIEEDTE ENSP00000301765/1-355 LSDRYQELRK LVERCQEQKA KLEKFSSALQ PGTLLDLLQV EGMKIEEESE ENSBTAP00000010607/1-350 LSDKYQELRK LVERYQEQKA KLEKFSSALQ LGTLLDLLQI ESMKIEEESE BACU005406/1-346 LSDKYQELRK LVERCQEQKA KLEKFSSAPQ LGALLDLLKI ESMKIEEESE ENSTTRP00000000036/1-345 LSDKYQELRK LVERCQEQRA KLEKFSSALQ LGALLDLLQV ESMKIEEESE 201 250 bmy_01463T0/1-367 NMAEKFLDGE LPLDSFIDVY QSKRKLAHMR RVKIEKLQEM V--------L ENSP00000301765/1-355 AMAEKFLEGE VPLETFLENF SSMRMLSHLR RVRVEKLQEV VRKPRASQEL ENSBTAP00000010607/1-350 AMAEKFLEGE VPLDTFLENF SSMRTLSHLR RVRVEKLQDV MKKPRASLEP BACU005406/1-346 AMAEKFLEGE VPLDTFLENF SSMRTLSHLR RVRVEKLQDA MRKPRASLEL ENSTTRP00000000036/1-345 AMAEKFLEGE VPLDTFLEDF SSMRMLSHLR RVRVEKLQDV MRKPRASLEL 251 300 bmy_01463T0/1-367 KGQRLPQAPP PALLP----- PRV------- -PEP--VPAA PLPY-PSPEA ENSP00000301765/1-355 AGDAPPPRPP PPVRPVPQGT PPVVEE-QPQ PPLA--MPPY PLPYSPSPSL ENSBTAP00000010607/1-350 AGDTPPPRPP PPLHPGPQTT PPPAEDAQPQ PPQPSVVPPY PLPYSPSPGM BACU005406/1-346 AGDAPPPRPP PPSLPGPQAT PPVAED-Q-Q PPAA--VPPY PLPYSPSPGL ENSTTRP00000000036/1-345 AGDAPPPRPP PPSLPGPQAT PPVAED-Q-Q APEA---PPY PLPYSPSPGL 301 350 bmy_01463T0/1-367 SGPPSAVPRR IPPPPPPVP- ------AGRL AAPFAAALGS GQG------- ENSP00000301765/1-355 PVGPTA-HGA LPPAPFPVVS QPSF-YSGPL GPTYPAAQLG PRGAAGYSWS ENSBTAP00000010607/1-350 PVGPTA-HGA LPPAPFPVVS QPSFSYSGPL GPPYAAAQPG TRAPSGYSWS BACU005406/1-346 PVGPTP-QGA LPPAPFPVMS QPSFSYSGPL GPPYPSAQPG PRAAAGYSWS ENSTTRP00000000036/1-345 PVGPTA-QGA LPPAPFPVVS QPSFSYSGPL GPPYPSAQPG PRAAAGYSWS 351 400 bmy_01463T0/1-367 --------PL HPVAQC---- PPLPPRGGLP AEQGFSLQQF VL-----PPY ENSP00000301765/1-355 PQRSMPPRPG YPGTPMGASG PGYPLRGGRA PSPGYPQQSP YPATGGKPPY ENSBTAP00000010607/1-350 PQRSMPPRPG YPVAPTGASG PGYPVVGGRA PSPGYPQQPP YLSTGGKPPY BACU005406/1-346 PQRSTPPRPA YPVAPAGVSG PGYPVVGSRA PGPGYPQQPP YLSTGGKPPY ENSTTRP00000000036/1-345 PQRSTPPRPA YPVAPTCASG PGYPVAGGRV PGPGYPQQPP YLSTGGKPPY 401 450 bmy_01463T0/1-367 P--------- -------PAL PQRPPPRLPP HQ-------- -PGFILQ ENSP00000301765/1-355 PIQPQLPSFP GQPQPSVPLQ PPYPPGPAPP YGFPPPPGPA WPGY--- ENSBTAP00000010607/1-350 PT-------- -QPQPSGPLQ PPYPPGPAPP YGFPPPQGPT WPGY--- BACU005406/1-346 PT-------- -QPQPSGPLQ SPYPPGPAPP YGFPLPQGPA WPGY--- ENSTTRP00000000036/1-345 PT-------- -QPQPSGPLQ SPYPPGPAPP YGFPLPQGPA WPGY---