KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:31 2014 Check: 00 .. Name: ENSBTAP00000010628/1-840 Len: 867 Check: 1900 Weight: 1.00 Name: ENSP00000337053/1-794 Len: 867 Check: 3709 Weight: 1.00 Name: ENSTTRP00000007828/1-792 Len: 867 Check: 4508 Weight: 1.00 Name: bmy_18722T0/1-738 Len: 867 Check: 3426 Weight: 1.00 Name: BACU013138/1-813 Len: 867 Check: 3297 Weight: 1.00 // 1 50 ENSBTAP00000010628/1-840 GKGWRKETRA GSPAARRRRR RRRRLSWWWP RRKRQHQGVA AALGSRMRVW ENSP00000337053/1-794 ---------- ---------- ---------- ---------- ------MRVR ENSTTRP00000007828/1-792 ---------- ---------- ---------- ---------- ------MRVW bmy_18722T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU013138/1-813 ---------- ---------- ---------- ---------- ------MRVW 51 100 ENSBTAP00000010628/1-840 VGLTLLLWAV LLGSALASSD EEGNQDESVD SKTSVPSDES VENHSPASRV ENSP00000337053/1-794 IGLTLLLCAV LLSLASASSD EEGSQDESLD SKTTLTSDES VKDHTTAGRV ENSTTRP00000007828/1-792 VGLTFLLCAV LLGSASASSD EEGNQDETLD SKTSLPSDES VEDHSPAGRV bmy_18722T0/1-738 ---------- ---------- ---------- --------ES VEDHSPAGRV BACU013138/1-813 VGLTLLLCAV LLGSASASSA EN-FPDGYLN PQIIRPSYES VEDHSPAGRV 101 150 ENSBTAP00000010628/1-840 IAGQIFLDSE ESELESPPQE EEGNLRSQEG ESIAEEISFL ESPNPENKDY ENSP00000337053/1-794 VAGQIFLDSE ESELESSIQE EEDSLKSQEG ESVTEDISFL ESPNPENKDY ENSTTRP00000007828/1-792 VAGQIFLDSE ESELESPIQE EEDGLRSQEG ETVTEEISFL ESANPENKDY bmy_18722T0/1-738 VAGQIFLDSE ESELESPIQE EEDGLRSQEG ESVTEEISFL ESPNPENKDY BACU013138/1-813 VAGQIFLDSE ESELESPIQE EEDGLRSQEG ESVTEEISFL ESPNPENKDY 151 200 ENSBTAP00000010628/1-840 EELTKVRK-- -----PALTA IEGTAHGEPC HFPFLFLDKE YDECTSDGRE ENSP00000337053/1-794 EEPKKVRK-- -----PALTA IEGTAHGEPC HFPFLFLDKE YDECTSDGRE ENSTTRP00000007828/1-792 EEPMKVRK-- -----PALTA IEGTAHGEPC HFPFLFLDKE YDECTSDGRE bmy_18722T0/1-738 EEPMKVRKPD FFFFFPALTA IEGTAHGKPC HFPFLFLDKE YDECTSDGRE BACU013138/1-813 EEPMKVRK-- -----PALTA IEGTAHGEPC HFPFLFLDKE YDECTSDGRE 201 250 ENSBTAP00000010628/1-840 DGRLWCATTY DYKADEKWGF CETEEEAARR RQMQEAEMMY QTGMKILNGS ENSP00000337053/1-794 DGRLWCATTY DYKADEKWGF CETEEEAAKR RQMQEAEMMY QTGMKILNGS ENSTTRP00000007828/1-792 DGRLWCATTY DYKADEKWGF CETEEEAAKR RQMQEAEMMY QTGMKILNGS bmy_18722T0/1-738 DGRLWCATTY DYKADEKWGF CETEEEAAKR RQMQEAEMMY QTGMKILNGS BACU013138/1-813 DGRLWCATTY DYKADEKWGF CETEEEAAKR RQMQEAEMMY QTGMKILNGS 251 300 ENSBTAP00000010628/1-840 NKKSQKREAY RYLQKAASMN HTKALERVSY ALLFGDYLTQ NIQAAKEMFE ENSP00000337053/1-794 NKKSQKREAY RYLQKAASMN HTKALERVSY ALLFGDYLPQ NIQAAREMFE ENSTTRP00000007828/1-792 NKKSQKREAY RYLQKAASMN HTKALERVSY ALLFGDYLTQ NIQAAKEMFE bmy_18722T0/1-738 NKKSQKREAY RYLQKAASMN HTKALERVSY ALLFGDYLTQ NIQAAKEMFE BACU013138/1-813 NKKSQKREAY RYLQKAASMN HTKALERVSY ALLFGDYLTQ NIQAAKEMFE 301 350 ENSBTAP00000010628/1-840 KLTEEGSPKG QTALGFLYAS GLGVNSSQAK ALVYYTFGAL GGNLIAHMVL ENSP00000337053/1-794 KLTEEGSPKG QTALGFLYAS GLGVNSSQAK ALVYYTFGAL GGNLIAHMVL ENSTTRP00000007828/1-792 KLTEEGSPKG QTALGFLYAS GLGVNSSQAK ALVYYTFGAL GGNLIAHMVL bmy_18722T0/1-738 KLTEEGSPKG QTALGFLYAS GLGVNSSQAK ALVYYTFGAL GGNLIAHMVL BACU013138/1-813 KLTEEGSPKG QTALGFLYAS GLGVNSSQAK ALVYYTFGAL GGNLIAHMVL 351 400 ENSBTAP00000010628/1-840 GYRYWAGIGV LQSCESALTH YRLVANHVAS DISLTGGSVV QRIRLPDEVE ENSP00000337053/1-794 GYRYWAGIGV LQSCESALTH YRLVANHVAS DISLTGGSVV QRIRLPDEVE ENSTTRP00000007828/1-792 GYRYWAGIGV LQSCESALTH YRLVANHVAS DISLTGGSVV QRIRLPDEVE bmy_18722T0/1-738 GYRYWAGIGV LQSCESALTH YRLVANHVAS DISLTGGSVV QRIRLPDEVE BACU013138/1-813 GYRYWAGIGV LQSCESALTH YRLVANHVAS DISLTGGSVV QRIRLPDEVE 401 450 ENSBTAP00000010628/1-840 NPGMNSGMLE EDLIQYYQFL AEKGDVQAQV GLGQLHLHGG RGVEQNHQRA ENSP00000337053/1-794 NPGMNSGMLE EDLIQYYQFL AEKGDVQAQV GLGQLHLHGG RGVEQNHQRA ENSTTRP00000007828/1-792 NPGMNSGMLE EDLIQYYQFL AEKGDVQAQV GLGQLHLHGG RGVEQNHQRA bmy_18722T0/1-738 NPGMNSGMLE EDLIQYYQFL AEKGDVQAQV GLGQLHLHGG RGVEQNHQRA BACU013138/1-813 NPGMNSGMLE EDLIQYYQFL AEKGDVQAQV GLGQLHLHGG RGVEQNHQRA 451 500 ENSBTAP00000010628/1-840 FDYFNLAANA GNSHAMAFLG KMYSEGSDIV PQSNETALHY FKKAADMGNP ENSP00000337053/1-794 FDYFNLAANA GNSHAMAFLG KMYSEGSDIV PQSNETALHY FKKAADMGNP ENSTTRP00000007828/1-792 FDYFNLAANA GNSHAMAFLG KMYSEGSDIV PQSNETALHY FKKAADMGNP bmy_18722T0/1-738 FDYFNLAANA GNSHAMAFLG KMYSEGSDIV PQSNETALHY FKKAADM--- BACU013138/1-813 FDYFNLAANA GNSHAMAFLG KMYSEGSDIV PQSNETALHY FKKAADMGNP 501 550 ENSBTAP00000010628/1-840 VGQSGLGMAY LYGRGVQVNY DLALKYFQKA AEQGWVDGQL QLGSMYYNGI ENSP00000337053/1-794 VGQSGLGMAY LYGRGVQVNY DLALKYFQKA AEQGWVDGQL QLGSMYYNGI ENSTTRP00000007828/1-792 VGQSGLGMAY LYGRGVQVNY DLALKYFQKA AEQGWVDGQL QLGSMYYNGI bmy_18722T0/1-738 ---------- --------NY DLALKYFQKA AEQGWVDGQL QLGSMYYNGI BACU013138/1-813 VGQSGLGMAY LYGRGVQVNY DLALKYFQKA AEQGWVDGQL QLGSMYYNGI 551 600 ENSBTAP00000010628/1-840 GVKRDYKQAL KYFNLASQGG HILAFYNLAQ MHASGTGVMR SCHTAVELFK ENSP00000337053/1-794 GVKRDYKQAL KYFNLASQGG HILAFYNLAQ MHASGTGVMR SCHTAVELFK ENSTTRP00000007828/1-792 GVKRDYKQAL KYFNLASQGG HILAFYNLAQ MHASGTGVMR SCHTAVELFK bmy_18722T0/1-738 GVKRDYKQAL KYFNLASQGG HILAFYNLAQ MHASGTGVMR SCHTAVELFK BACU013138/1-813 GVKRDYKQAL KYFNLASQGG HILAFYNLAQ MHASGTGVMR SCHTAVELFK 601 650 ENSBTAP00000010628/1-840 NVCERGRWSE RLMTAYSSYK DGDSNAAVIQ YLLLAEQGYE VAQSNAAFIL ENSP00000337053/1-794 NVCERGRWSE RLMTAYNSYK DGDYNAAVIQ YLLLAEQGYE VAQSNAAFIL ENSTTRP00000007828/1-792 NVCERGRWSE RLMTAYNSYK DGDYNAAVIQ YLLLAEQGYE VAQSNAAFIL bmy_18722T0/1-738 NVCERGRWSE RLMTAYNSYK DGDYNAAVIQ YLLLAEQGYE VAQSNAAFIL BACU013138/1-813 NVCERGRWSE RLMTAYNSYK DGDYNAAVIQ YLLLAEQGYE VAQSNAAFIL 651 700 ENSBTAP00000010628/1-840 DQREATIVGE NETYPRALLH WNRAASQGYT VARIKLGDYH FYGFGTDVDY ENSP00000337053/1-794 DQREASIVGE NETYPRALLH WNRAASQGYT VARIKLGDYH FYGFGTDVDY ENSTTRP00000007828/1-792 DQREATIVGE NETYPRALLH WNRAASQGYT VARIKLGDYH FYGFGTDVDY bmy_18722T0/1-738 DQREATIVGE NETYPRALLH WNRAASQGYT VARIKLGDYH FYGFGTDVDY BACU013138/1-813 DQREATIVGE NETYPRALLH WNRAASQGYT VARIKLGDYH FYGFGTDVDY 701 750 ENSBTAP00000010628/1-840 ETAFIHYRLA SEQQHSAQAM FNLGYMHEKG LGIKQDIHLA KRFYDMAAEA ENSP00000337053/1-794 ETAFIHYRLA SEQQHSAQAM FNLGYMHEKG LGIKQDIHLA KRFYDMAAEA ENSTTRP00000007828/1-792 ETAFIHYRLA SEQQHSAQAM FNLGYMHEKG LGIKQDIHLA KRFYDMAAEA bmy_18722T0/1-738 ETAFIHYRLA SEQQHSAQAM FNLGYMHEKG LGIKQDIHLA KRFYDMAAEA BACU013138/1-813 ETAFIHYRLA SEQQHSAQAM FNLGYMHEKG LGIKQDIHLA KRFYDMAAEA 751 800 ENSBTAP00000010628/1-840 SPDAQVPVFL ALCKLGVVYF LQYIRETN-- ---------- --------IR ENSP00000337053/1-794 SPDAQVPVFL ALCKLGVVYF LQYIRETN-- ---------- --------IR ENSTTRP00000007828/1-792 SPDAQVPVFL ALCKLGIVYF LQYIRETN-- ---------- --------LR bmy_18722T0/1-738 SPDAQVPVFL ALCKLGIVYF LQYIRETN-- ---------- --------LR BACU013138/1-813 SPDAQVPVFL ALCKLGIVYF LQYIRETNMK GPHQVRDECS HKALNSSQLR 801 850 ENSBTAP00000010628/1-840 DIFTQLDMDQ LLGPEWDLYL MTIIALLLGT VIAYRQRQHQ DMPVPRPPGP ENSP00000337053/1-794 DMFTQLDMDQ LLGPEWDLYL MTIIALLLGT VIAYRQRQHQ DMPAPRPPGP ENSTTRP00000007828/1-792 DLFTQLDMDQ LLGPEWDLYL MTIIALLLGT VIAYRQRQHQ DMPVPR-PGP bmy_18722T0/1-738 DLFTQLDMDQ LLGPEWDLYL MTIIALLLGT VIAYRQRQHQ DMPVPRPPGP BACU013138/1-813 DLFTQLDMDQ LLGPEWDLYL MTIIALLLGT VIAYRQRQHQ DMPVPRPPGP 851 900 ENSBTAP00000010628/1-840 RPAPPQQEGP PEQPPPQ ENSP00000337053/1-794 RPAPPQQEGP PEQQPPQ ENSTTRP00000007828/1-792 RPAPPQQ-GP PEQQPPQ bmy_18722T0/1-738 RPAPPQQEGP PEQQPPQ BACU013138/1-813 RPAPPQQEGP PEQQPPQ