KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:38 2014 Check: 00 .. Name: ENSP00000465992/1-852 Len: 935 Check: 9749 Weight: 1.00 Name: ENSBTAP00000010636/1-863 Len: 935 Check: 4790 Weight: 1.00 Name: ENSTTRP00000005918/1-861 Len: 935 Check: 5588 Weight: 1.00 Name: bmy_11374T0/1-541 Len: 935 Check: 3116 Weight: 1.00 Name: BACU008413/1-797 Len: 935 Check: 5570 Weight: 1.00 // 1 50 ENSP00000465992/1-852 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010636/1-863 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005918/1-861 ---------- ---------- ---------- ---------- ---------- bmy_11374T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU008413/1-797 MAVPLELTHT RNGRPSCAQA SASPRSWCCP GFRGHGEQRG RQEPTAGGYP 51 100 ENSP00000465992/1-852 ---------- -----MAVED STLQVVVRVR PPTPRELDSQ RRPVVQVVDE ENSBTAP00000010636/1-863 ---------- ---MVMAVED SMLRVVVRLR PPTPKELESQ RRPVVQVVDE ENSTTRP00000005918/1-861 ---------- -----MAVEN SMVRVVVRVR PPTPRELESQ RRPVVQVVDE bmy_11374T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU008413/1-797 NWMTLQEGQA GVAMVMAVEN SMVQVVVRVR PPTPRELESQ RRPVVQVVDE 101 150 ENSP00000465992/1-852 RVLVFNPEEP DGGFPGLKWG GTHDGPKKKG KDLTFVFDRV FGEAATQQDV ENSBTAP00000010636/1-863 RVLVFDPEEP DGGFLGLKWG SAQDGPRKKG KDLTFVFDRV FGETATQQDV ENSTTRP00000005918/1-861 RVLVFDPEEP DGGFLGLKWG SVHDGPKKKG KDLTFVFDRV FGEAATQQDV bmy_11374T0/1-541 ---------- ----LGL--- ---------- ---------- ---------- BACU008413/1-797 RVLVFDPEEP DGGFLGLKWG SVHDGPKKKG KDLTFVFDRV FGEAATQQDV 151 200 ENSP00000465992/1-852 FQHTTHSVLD SFLQGYNCSV FAYGATGAGK THTMLGREGD PGIMYLTTVE ENSBTAP00000010636/1-863 FQHTTHSILD SFLQGYNCSV FAYGATGAGK THTMLGRERD PGIMYLTTME ENSTTRP00000005918/1-861 FHHTTHSILD SFLQGYNCSV FAYGATGAGK THTMLGREGD PGIMYLTTME bmy_11374T0/1-541 ---------- -------CS- ---------- ---------- ---------- BACU008413/1-797 FHHTTHSILD SFLQGYNCSV FAYGATGAGK THTMLGREGD PGIMYLTTME 201 250 ENSP00000465992/1-852 LYRRLEARQQ EKHFEVLISY QEVYNEQIHD LLEPKGPLAI REDPDKGVVV ENSBTAP00000010636/1-863 LYRRLEACRE EKRFEVLISY LEVYNEQIHD LLEPKGPLAI REDPDKGVVV ENSTTRP00000005918/1-861 LYRRLEACRE EKRLEVLISY QEVYNEQIHD HLEPKGPLAI REDPDKGVVV bmy_11374T0/1-541 ---------- ---------- ---------- ---------- ---PDT---- BACU008413/1-797 LYRRLEACRE EKRLEVLISY QEVYNEQIHD LLEPKGPLAI REDPDKGVVV 251 300 ENSP00000465992/1-852 QGLSFHQPAS AEQLLEILTR GNRNRTQHPT DANATSSRSH AIFQIFVKQQ ENSBTAP00000010636/1-863 QGLSFHQPTS AEQLLGMLTR GNRNRTQHPT DANATSSRSH AIFQIFVKQQ ENSTTRP00000005918/1-861 QGLSFHQPTS AEQLLGMLTR GNRNRTQHPT DVNATSSRSH AIFQIFVKQQ bmy_11374T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU008413/1-797 QGLSFHQPTS AEQLLGMLTR GNRNRTQHPT DVNATSSRSH AIFQIFVKQQ 301 350 ENSP00000465992/1-852 DRVPGLTQAV QVAKMSLIDL AGSERASSTH AKGERLREGA NINRSLLALI ENSBTAP00000010636/1-863 DRIPGLTQAL RVAKMSLIDL AGSERASSTH AKGERLREGA NINRSLLALI ENSTTRP00000005918/1-861 DRIPGLTQAL RVAKMSLIDL AGSERASSTH AKGERLREGA NINRSLLALI bmy_11374T0/1-541 ---------- ---------- ----HSTPTH C--------- ---------- BACU008413/1-797 DRIPGLTQAL RVAKMSLIDL AGSERASSTH AKGERLREGA SINRSLLALI 351 400 ENSP00000465992/1-852 NVLNALADAK GRKTHVPYRD SKLTRLLKDS LGGNCRTVMI AAISPSSLTY ENSBTAP00000010636/1-863 NVLNALADAK GRKSHVPYRD SKLTRLLKDC IGGNCRTVMI AAVSPSSLTY ENSTTRP00000005918/1-861 NVLNALADAK GRKSHVPYRD SKLTRLLKDS IGGNCRTVMI AAISPSSLAY bmy_11374T0/1-541 --------PQ GRKSHVPYRD SKLTRLLKDS IGGNCRTVMI AAISPSSLAY BACU008413/1-797 NVLNALADAK GRKSHVPYRD SKLTRLLKDS IGGNCRTVMI AAISPSSLAY 401 450 ENSP00000465992/1-852 EDTYNTLKYA DRAKEIRLSL KSNVTSLDCH ISQYATICQQ LQAEVAALRK ENSBTAP00000010636/1-863 EDTYNTLKYA DRAKEIKLSL KSNVISLDCH ISQYATICQQ LQAEVAALRE ENSTTRP00000005918/1-861 EDTYNTLKYA DRAKEIKLSL KSNVISLDCH ISQYASICQQ LQAEVAALRE bmy_11374T0/1-541 EDTYNTLKYA DRAKEIKLSL KSNVISLDCH ISQYATICQQ LQAEVAALRE BACU008413/1-797 EDTYNTLKYA DRAKEIKLSL KSNVISLDCH ISQYATICQQ LQAEVATLRE 451 500 ENSP00000465992/1-852 KLQVYEGGGQ PPPQDLPGSP KSGPPPE--- ---------H QPCTPELPAG ENSBTAP00000010636/1-863 KLRVYEAAAQ APPHDAPRSP KPGTPHQPLP SCPSPSHLPS QPRTPELQPG ENSTTRP00000005918/1-861 KLRVYEAGAQ APQQDSSQPP KADPPHQPLP SCPSPSRLPS QPCTPELRPG bmy_11374T0/1-541 KLRVYEAGAQ APQQDSSRSP KAGPPHQPLP SCPSPSRLPX QPCTPELHPG BACU008413/1-797 KLRVYEAGAQ APQQDSSRSP KAGPPHQPLP SCPSPSRLPS QPCTPELHPG 501 550 ENSP00000465992/1-852 PRALQEESLG MEAQVERAME GNSSDQEQSP EDEDEGPAEE VPTQMPEQNP ENSBTAP00000010636/1-863 SAVLQEESLG SEAPGEKVVD GNSSNREQPP EDKDEGPAKE IPTQVPEQNL ENSTTRP00000005918/1-861 SAVLQEESLG TEAQVEKVVE GNSSEREQLP EDKDEGPAEE VPIQVPAQNL bmy_11374T0/1-541 SAVLQEESLG TEAQVEKVVE GNSSDKEQPP EDKDEGPAEE VPIQVPAQNL BACU008413/1-797 SAVLQEESLG TEAQVEKVVE GNSSDREQPP EDKDEGPAEE VPIQVPAQNL 551 600 ENSP00000465992/1-852 THALPESPRL TLQPKPVVGH FSARELDGDR SKQLALKVLC VAQRQYSLLQ ENSBTAP00000010636/1-863 RHPSPRSPDL TVQPKPVVDH LPPPNLDRDR SKQLALRVLC LAQRQYSLLQ ENSTTRP00000005918/1-861 RHPLPGSPDL TLQPKPVADH LPPQNLGSDR SKQLALRVLC LAQRQYSLLQ bmy_11374T0/1-541 RHPLPGSPDL TLQPKPVVDH LPPQNLGRDR CKQLALRVLC LAQRQYSLLQ BACU008413/1-797 RHPLPGSPDL TLQPKPVVDH LPPQNLGRDR SKQLALRVLC LAQRQYSLLQ 601 650 ENSP00000465992/1-852 AANLLTPDMI TEFETLQQLV QEEKIEPGAE ALRTSGLARG APLAQELCSE ENSBTAP00000010636/1-863 AANLLTPDMV TEFETLQQLV REENAGPGGE ASGEPGPARK APLAQELRSE ENSTTRP00000005918/1-861 AANLLTPDMI AEFEMLQQLV QEENTEPGAE ATAEPDPARG PPLAQELRSE bmy_11374T0/1-541 AANLLTPDMI AEFEMLQQLV QEENTEPGAE ATGEPGPARG SPLAQELRSE BACU008413/1-797 AANLLTPDMI AEFEMLQQLV QEENTEPGAE ATGEPGPARG SPLAQELRSE 651 700 ENSP00000465992/1-852 SIPVPSPLCP EPPGYTGPVT RTMARRLSGP LHTLGIPPGP NCTPAQGSRW ENSBTAP00000010636/1-863 S--------- KSAGYSGPVT RTMARQLSGL THTLGVPPGP DCTPPQASRE ENSTTRP00000005918/1-861 SIPEHPPLCP ESPGYSGPVT RTMAKQLNGL IHALGVPPGP DRTSAQASQR bmy_11374T0/1-541 S--------- KSPGYSGPVT RTMARQLSGL IHALGVPPRP DRTSAQASRR BACU008413/1-797 S--------- ---------- ---------- ---------- ---------- 701 750 ENSP00000465992/1-852 PMEKKRRRPS ALEADSPMAP KRGTKRQRQS FLPCLRRGSL PDTQPSQGPS ENSBTAP00000010636/1-863 ATEKKRRRPS PSEPDSPPAP KLGTKRQRQS LLPCLRRGTL PEARLPCGPS ENSTTRP00000005918/1-861 PTEKKRRRPS PLEPDSPPDP KPGTKRRRQS LLPCPRRGTP PEARLPCGPI bmy_11374T0/1-541 PTEKKRRRPS PLEPDSPPGP KPGTKRQRQS LLPCLRRGTP PEAQLPCGPI BACU008413/1-797 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000465992/1-852 TPKGERASSP CHSPRVCPAT VIKSRVPLGP SAMQNCSTPL ALPTRDLNAT ENSBTAP00000010636/1-863 TPTGKRAPSP CPSPRFCPAT VIKSRVPLGP SALQNCSTPL PLPSRDLNAT ENSTTRP00000005918/1-861 TPTGGRASSP RHSPNFCPAT VIKSRVPLGP SALQNCSTPL ALPARDLNAT bmy_11374T0/1-541 TPTGGRASSP CHSSHFCPAT VIKSRVPLGP SALQNCSTPL ALPARDLNAT BACU008413/1-797 ---------- --------TT VIKSRVPLGP SALQNCSTPL ALPARDLNAT 801 850 ENSP00000465992/1-852 FDLSEEPPSK PSFHECIGWD KIPQELSRLD QPFIPRAPVP LFTMKGPKPT ENSBTAP00000010636/1-863 FDLSEEPLAK LGFHECIGWD SVPQELNRLD QPFIPSAPMP LFTMKGPKPA ENSTTRP00000005918/1-861 FDLSEETPSK LGFHECIGWD SVPRELNRLD QPFIPSGPRP LFTVKGPKPA bmy_11374T0/1-541 FDLSEETRSK LGFHECIGWD NVPQELNRLD QPFIPSGPRP LFTMKGPEPA BACU008413/1-797 FDLSEETPSK LGFHECIGWD NVPQELNRLD QPFIPSRPRH LFTIKGPEPA 851 900 ENSP00000465992/1-852 SSLPGTSACK KKRVASSSVS ------HGRS RIARLPSSTL KRPAGPLVLP ENSBTAP00000010636/1-863 SSFSGTSARK KRRAVSSSIS RSLGVARGRS RIARLPSTTL KRPAGPLAIP ENSTTRP00000005918/1-861 TSFPGTSARK KRRVVAS--- ------RGHS RIARLPSSTL KRSAGPLAIP bmy_11374T0/1-541 TSFPGTSARK KRRVVSSSMS ------RGHS RIARLPSSTL KRPAGPLAI- BACU008413/1-797 TSFPGTSARK KRRVVSSSIS ------RGHS RIARLPSSTL KRPAGPLAI- 901 950 ENSP00000465992/1-852 ELPLSPLCPS NRRNGKDLIR VGRALSAGNG VTKVS ENSBTAP00000010636/1-863 EPPSSPHYPG NQKNQEELMG VTGALSAGSC SIKVS ENSTTRP00000005918/1-861 EPPSSLHSPG NQRSQKELLR VGRALSAGSC SAKVS bmy_11374T0/1-541 ---------- ---------- ---------- ----- BACU008413/1-797 --------PG DWHLGAGMLW VTVADGDKK- -----