KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:43 2014 Check: 00 .. Name: bmy_09110T0/1-605 Len: 1024 Check: 1099 Weight: 1.00 Name: BACU013565/1-325 Len: 1024 Check: 6628 Weight: 1.00 Name: ENSP00000303887/1-783 Len: 1024 Check: 6848 Weight: 1.00 Name: ENSTTRP00000000709/1-767 Len: 1024 Check: 7740 Weight: 1.00 Name: ENSBTAP00000010653/1-706 Len: 1024 Check: 4310 Weight: 1.00 // 1 50 bmy_09110T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU013565/1-325 MASTRSIELE HFEERDKRPR PGSRRGAPSS SGGSSSSGPK GNGLIPSPAH ENSP00000303887/1-783 MASTRSIELE HFEERDKRPR PGSRRGAPSS SGGSSSSGPK GNGLIPSPAH ENSTTRP00000000709/1-767 MASTRSIELE HFEERDKRPR PGSRRGAPSS SGGSSSSGPK GNGLIPSPAH ENSBTAP00000010653/1-706 MASTRSIELE HFEERDKRPR PGSRRGAPSS SGGSSSSGPK GNGLIPSPAH 51 100 bmy_09110T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU013565/1-325 SAHCSFYRTR TLQALSSEKK AKKARFYRNG DRYFKGLVFA ISGDRFRSFD ENSP00000303887/1-783 SAHCSFYRTR TLQALSSEKK AKKARFYRNG DRYFKGLVFA ISSDRFRSFD ENSTTRP00000000709/1-767 SAHCSFYRTR TLQALSSEKK AKKARFYRNG DRYFKGLVFA ISSDRFRSFD ENSBTAP00000010653/1-706 SAHCSFYRTR TLQALSSEKK AKKARFYRNG DRYFKGLVFA ISSDRFRSFD 101 150 bmy_09110T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU013565/1-325 ALLMELTRSL SDNVNLPQGV RTIYTIDGSR KVTSLDELLE VNSSRISMPK ENSP00000303887/1-783 ALLIELTRSL SDNVNLPQGV RTIYTIDGSR KVTSLDELL- ---------- ENSTTRP00000000709/1-767 ALLMELTRSL SDNVNLPQGV RTIYTIDGSR DVTS-NELL- ---------- ENSBTAP00000010653/1-706 ALLMELTRSL SDNVNLPQGV RTIYTIDGSR KVTSLDELL- ---------- 151 200 bmy_09110T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU013565/1-325 RGFVDILLPT YSDVLCNVST PFSVEGESYV CASNEPFRKV DYTKNINPNW ENSP00000303887/1-783 ---------- ---------- ----EGESYV CASNEPFRKV DYTKNINPNW ENSTTRP00000000709/1-767 ---------- ---------- ----ERESYV CASNEPFRKV DYTKNINPNW ENSBTAP00000010653/1-706 ---------- ---------- ----EGESYV CASNEPFRKV DYTKNVNPNW 201 250 bmy_09110T0/1-605 ---------- -----MKVET ELKSARSSV- ---------- ---------- BACU013565/1-325 SVNIKGGTTR ALAAPSSVKS EVKESKDFIK PKLVTVIRSG VKPRKAVRIL ENSP00000303887/1-783 SVNIKGGTSR ALAAASSVKS EVKESKDFIK PKLVTVIRSG VKPRKAVRIL ENSTTRP00000000709/1-767 SVNIKGGTTR AVAAPSSVKS EVKESKDFIK PKLVTVIRSG VKPRKAVRIL ENSBTAP00000010653/1-706 SVNIKGGATR S-APPSSVKS EVKESKDFIK PKLVTVIRSG VKPRKAVRIL 251 300 bmy_09110T0/1-605 ---------- ---------- ---------- ------PVTC LQDFFGDDDV BACU013565/1-325 LNKKTAHSFE QVLTDITEAI KLDSGVVKRL CTLDGKQ--- ---------- ENSP00000303887/1-783 LNKKTAHSFE QVLTDITEAI KLDSGVVKRL CTLDGKQVTC LQDFFGDDDV ENSTTRP00000000709/1-767 LNKKTAHSFE QVLTDITEAI KLDSGVVKRL CTLDGKQVTC LQDFFGDDDV ENSBTAP00000010653/1-706 LNKKTAHSFE QVLTDITEAI KLDSGVVKRL CTLDGKQVTC LQDFFGDDDV 301 350 bmy_09110T0/1-605 FIACGPEKFR YAQDDFVLDH SECRVLKSSY SRTSAVKYSG SKSPGPSRRS BACU013565/1-325 ---------- -KEEDHTAHQ ETLSAIRV-W SKVAWQKWDG SK-------- ENSP00000303887/1-783 FIACGPEKFR YAQDDFVLDH SECRVLKSSY SRSSAVKYSG SKSPGPSRRS ENSTTRP00000000709/1-767 FIACGPEKFR YAQDDFVLDH SECRVLKSSY SRSSAVKYSG SKSPGPSRRS ENSBTAP00000010653/1-706 FIACGPEKFR YAQDDFVLDH SECRVLKSSY SRSSAVKYSG SKSPGLSRRS 351 400 bmy_09110T0/1-605 KSPAS----- ---------- --VNGTPSSQ LSTPKSTKSS SSSPTSPGSF BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 KSPASVKRGG HYSSAYSTAK SPVNGTPSSQ LSTPKSTKSS SSSPTSPGSF ENSTTRP00000000709/1-767 KSPASVKRGG HYSRAYSTAK SPVNGTPSSQ LSTPKSTKSS SSSPTSPGSF ENSBTAP00000010653/1-706 KSPASVKRGG HYSSAYSTAR SPVNGTPSSQ LSTPKSTKSS SSSPTSPGSF 401 450 bmy_09110T0/1-605 RGLKCDAISS QCYSLTMYSV RASNRAECGQ DWHSSEQKWI LVHFPSLHTH BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 RGLK------ ---------- ---------- ---------- ---------- ENSTTRP00000000709/1-767 RGLK------ ---------- ---------- ---------- ---------- ENSBTAP00000010653/1-706 RGLK------ ---------- ---------- ---------- ---------- 451 500 bmy_09110T0/1-605 KNGAAAAREA PGMLFFICNN RHFTFARDLS RDLGEYPAFL GFSEHQASLP BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 ---------- ---------- ---------- ---------- -----QISAH ENSTTRP00000000709/1-767 ---------- ---------- ---------- ---------- -----QISAH ENSBTAP00000010653/1-706 ---------- ---------- ---------- ---------- -----QVSAH 501 550 bmy_09110T0/1-605 GGHVSLIASG VILARQVQIR AVAKCFPRTD PHGRLKPSGG TFRWLGVNGS BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 GRSSSNVNGG PELDRCISPE ---------- ---------- -----GVNGN ENSTTRP00000000709/1-767 GRSSSNVNGG PELDR----- ---------- ---------- ------VNGN ENSBTAP00000010653/1-706 GRSSSNVNGG PEIDRCMSPE ---------- ---------- -----GVDGH 551 600 bmy_09110T0/1-605 RCSESSTLLE KYKIGKVIGD GNFAVVKECM DRSTGKEFAL KIIDKAKCCG BACU013565/1-325 RCE------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 RCSESSTLLE KYKIGKVIGD GNFAVVKECI DRSTGKEFAL KIIDKAKCCG ENSTTRP00000000709/1-767 RCSESSPLLE KYKIGKVIGD GNFAVVKECM DRSTGKEFAL KIIDKAKCCG ENSBTAP00000010653/1-706 RCSES-TLLE KYKIGKVIGD GNFAVVKECM DRSTGKEFAL KIIDKAKCCG 601 650 bmy_09110T0/1-605 KLQSLSPYVH PPLPVTVIKD MVGTDEPKAS KQVYKCGGFA ASFLCLCGRE BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000709/1-767 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010653/1-706 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_09110T0/1-605 ELAAQLLPLG GTRALLLPSA AALWDGNQVA NDSSYKEHLI ENEVSILRRV BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 ---------- ---------- ---------- -----KEHLI ENEVSILRRV ENSTTRP00000000709/1-767 ---------- ---------- ---------- -----KEHLI ENEVSILRRV ENSBTAP00000010653/1-706 ---------- ---------- ---------- -----KEHLI ENEVSILRRV 701 750 bmy_09110T0/1-605 KHPNIIMLVE EMETATELFL VMELVK---- ---------- ---------- BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 KHPNIIMLVE EMETATELFL VMELVKGGDL FDAITSSTKY TERDGSAMVY ENSTTRP00000000709/1-767 KHPNIIMLVE EMETATELFL VMELVKGGDL FDAITSSTKY TERDGSAMVY ENSBTAP00000010653/1-706 KHPNIIMLIE EMETATELFL VMELVKGGDL FDAITSSTKY TERDGSAMVY 751 800 bmy_09110T0/1-605 ---------- ---------- -----VCEYP DGTKSLKLGD FGLATVVEGP BACU013565/1-325 ---------- ---------- ------AENP D--------- ---------- ENSP00000303887/1-783 NLANALRYLH GLSIVHRDIK PENLLVCEYP DGTKSLKLGD FGLATVVEGP ENSTTRP00000000709/1-767 NLANALRYLH ALSIVHRDIK PENLLVCEYP DGTKSLKLGD FGLATVVEGP ENSBTAP00000010653/1-706 NLANALRYLH ALNIVHRDIK PENLLVCEYP DGTKSLKLGD FGLATVVEGP 801 850 bmy_09110T0/1-605 LYTVCGTPTY VAPEIIAETG YGLKVDIWAA GVITYILLCG FPPFRSENNL BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 LYTVCGTPTY VAPEIIAETG YGLKVDIWAA GVITYILLCG FPPFRSENNL ENSTTRP00000000709/1-767 LYTVCGTPTY VAPEIIAETG YGLKVDIWAA GVITYILLCG FPPFRSENNL ENSBTAP00000010653/1-706 LYTVCGTPTY VAPEIIAETG YGLKVDVWAA GVITYILLCG FPPFRSENNL 851 900 bmy_09110T0/1-605 QEDLFDQILA GKLEFPAPYW DNITDSAKEL ISQMLQVNVE ARCTAGQILS BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 QEDLFDQILA GKLEFPAPYW DNITDSAKEL ISQMLQVNVE ARCTAGQILS ENSTTRP00000000709/1-767 QEDLFDQILA GKLEFPAPYW DNITDSAKEL ISQMLQVNVE ARCTAGQILS ENSBTAP00000010653/1-706 QEDLFDQILA GKLEFPAPYW DNITDSAKEL ISQMLQVNVE ARCTAGQILS 901 950 bmy_09110T0/1-605 HPWVS----- ---VSTHVPG KPTSLCPVAN SVLPRQGFCA GKV------- BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 HPWVSDDASQ ENNMQAEVTG K---LKQHFN NALPKQNSTT TGVSVIMNTA ENSTTRP00000000709/1-767 HPWVSDDASQ ENNMQAEVTG K---LKQHFN NALPKQNSTT TGVSVIMNTA ENSBTAP00000010653/1-706 HPWVSDDASQ ENNMQAEVTG K---LKQHFN NALPKQNSTT TGVSVIM--- 951 1000 bmy_09110T0/1-605 ---------- ---------- ---------- ---------- ---------- BACU013565/1-325 ---------- ---------- ---------- ---------- ---------- ENSP00000303887/1-783 LDKEGQIFCS KHCQDSGRPG MEPISPVPPS VEEIPVPGEA VPAPTPPESP ENSTTRP00000000709/1-767 LDKEGQIFGS KLGADGSRPS LEPAAPEPPA ---------- -PEPLSPESP ENSBTAP00000010653/1-706 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_09110T0/1-605 -LHPSSMAD- ---------- ---- BACU013565/1-325 ---------- ---------- ---- ENSP00000303887/1-783 TPHPPPAAPG G--ERAGTWR RHRD ENSTTRP00000000709/1-767 PRSPAAAAAA AECERAGTWR RHRD ENSBTAP00000010653/1-706 ---------- ---------- ----