KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:44 2014 Check: 00 .. Name: BACU009500/1-685 Len: 696 Check: 5309 Weight: 1.00 Name: bmy_20774T0/1-496 Len: 696 Check: 9688 Weight: 1.00 Name: ENSP00000297785/1-501 Len: 696 Check: 4167 Weight: 1.00 Name: ENSBTAP00000010661/1-501 Len: 696 Check: 3749 Weight: 1.00 Name: ENSTTRP00000013454/1-476 Len: 696 Check: 2190 Weight: 1.00 // 1 50 BACU009500/1-685 -----MPDVP VPLTNLKFQY TKIFINNEWH SSVSGKKFPV -FNPATEEKL bmy_20774T0/1-496 -----MVVEF VQYAGIELMK TQLMRSFSVF YRVIATGFAN TFSPRIE--F ENSP00000297785/1-501 MSSSGTPDLP VLLTDLKIQY TKIFINNEWH DSVSGKKFPV -FNPATEEEL ENSBTAP00000010661/1-501 MSSSAMPDVP APLTNLQFKY TKIFINNEWH SSVSGKKFPV -FNPATEEKL ENSTTRP00000013454/1-476 MSSSAMPDVP VPLTNLKFQY TKXXXXXEWH SSVSGKKFPV -FNPATEEKL 51 100 BACU009500/1-685 CEVEEGDKED VDKAVKAARQ SFQIGSPWRT MDASERGRLI NKLADLIERD bmy_20774T0/1-496 FDLQ----ED VDKAVKAARQ SFQIGSPWRT MDASERGRLI NKLADLIERD ENSP00000297785/1-501 CQVEEGDKED VDKAVKAARQ AFQIGSPWRT MDASERGRLL YKLADLIERD ENSBTAP00000010661/1-501 CEVEEGDKED VDKAVKAARQ AFQIGSPWRT MDASERGRLL NKLADLIERD ENSTTRP00000013454/1-476 CEVEEGDKED VDKAVKAARQ SFQIGSPWRT MDASERGRLI NKLADLIERD 101 150 BACU009500/1-685 RLLLATMESM NGGKLFSNAY LMDLGGCIKT LRYCAGWADK IQGRTIPIDG bmy_20774T0/1-496 RLLLATMESM NGGKLFSDAY LMDLGGCIKT LRYCAGWADK IQGRTIPIDG ENSP00000297785/1-501 RLLLATMESM NGGKLYSNAY LNDLAGCIKT LRYCAGWADK IQGRTIPIDG ENSBTAP00000010661/1-501 HLLLATMEAM NGGKLFSNAY LMDLGGCIKT LRYCAGWADK IQGRTIPMDG ENSTTRP00000013454/1-476 RLLLATMESM NGGKLFSNAY LMDLGGCIKT LRYCAGWADK IQGRTIPIDG 151 200 BACU009500/1-685 NFFTYTRNEP IGVCGQIIPW NFPLVMLIWK IGPALSCGNT VVVKPAEQTP bmy_20774T0/1-496 NFFTYTRNEP IGVCGQIIPW NFPLVMLIWK IGPALSCGNT VVVKPAEQTP ENSP00000297785/1-501 NFFTYTRHEP IGVCGQIIPW NFPLVMLIWK IGPALSCGNT VVVKPAEQTP ENSBTAP00000010661/1-501 NFFTYTRSEP VGVCGQIIPW NFPLLMFLWK IGPALSCGNT VVVKPAEQTP ENSTTRP00000013454/1-476 NFFTYTRNEP IGVCGQIIPW NFPLVMLIWK IGPALSCGNT VVVKPAEQTP 201 250 BACU009500/1-685 LTALHMASLI KEVRFPPGVV NIVPGYGPTA GAAISSHMDV DKVAFTGSTQ bmy_20774T0/1-496 LTALHMASLI KEAGFPPGVV NIVPGYGPTA GAAISSHMDV DKVAFTGSTQ ENSP00000297785/1-501 LTALHVASLI KEAGFPPGVV NIVPGYGPTA GAAISSHMDI DKVAFTGSTE ENSBTAP00000010661/1-501 LTALHMGSLI KEAGFPPGVV NIVPGYGPTA GAAISSHMDV DKVAFTGSTE ENSTTRP00000013454/1-476 LTALHMTSLI KEAGFPPGVV NIVPGYGPTA GAAISSHMDV DKVAFTGSTQ 251 300 BACU009500/1-685 VGKMIKEAAG KSNLKRVTLE LGGKSPCIVF ADADLDSAVA FAHHGVFYHQ bmy_20774T0/1-496 VGKMIKEAAG KSNLKRVTLE LGGKSPCIVF ADADLDSAVA FAHHGVFYHQ ENSP00000297785/1-501 VGKLIKEAAG KSNLKRVTLE LGGKSPCIVL ADADLDNAVE FAHHGVFYHQ ENSBTAP00000010661/1-501 VGKLIKEAAG KSNLKRVSLE LGGKSPCIVF ADADLDNAVE FAHQGVFYHQ ENSTTRP00000013454/1-476 VGKMIKEAAG KSNLKRVTLE LGGKSPCIVF ADADLDSAVA FAHHGVFYHQ 301 350 BACU009500/1-685 GQCCIAASRL FVEESIYDEF VRKSVEQARK CVLGNPLTPG VSQGP----- bmy_20774T0/1-496 GQCCIAASRL FVEESIYDEF VRKSVEQARK YVLGNPLTPG VSQGPQDYSF ENSP00000297785/1-501 GQCCIAASRI FVEESIYDEF VRRSVERAKK YILGNPLTPG VTQGP----- ENSBTAP00000010661/1-501 GQCCIAASRL FVEESIYDEF VRRSVERAKK YVLGNPLTPG VSQGP----- ENSTTRP00000013454/1-476 GQCCIAASRL FVEESIYDEF VRKSVEQARK YVLGNPLTPG VNQGP----- 351 400 BACU009500/1-685 QIDKEQYEKI LDLIESGKKE GAKLECGGGP WGNKGYFIQP TVFSNVTDEM bmy_20774T0/1-496 QIDKEQYEKI LDLIESGKKE GAKLECGGGP WGNKGYFIQP TVFSNVTDEM ENSP00000297785/1-501 QIDKEQYDKI LDLIESGKKE GAKLECGGGP WGNKGYFVQP TVFSNVTDEM ENSBTAP00000010661/1-501 QIDKEQYEKI LDLIESGKKE GAKLECGGGP WGNKGYFIQP TVFSDVTDDM ENSTTRP00000013454/1-476 -IDKEQYEKI LDLIESGKKE GAKLECGGGP WGNKGYFIQP TVFSNVTDEM 401 450 BACU009500/1-685 RIAKEENTTE DHTTGHYRKP QNTTDHTTPQ NNTEHHRHHR ISQNTTEDHT bmy_20774T0/1-496 RIAKEEIFGP VQQIMKFKSL DDVIKR---- ---------- -ANNTFYGLS ENSP00000297785/1-501 RIAKEEIFGP VQQIMKFKSL DDVIKR---- ---------- -ANNTFYGLS ENSBTAP00000010661/1-501 RIAKEEIFGP VQQIMKFKSL DDVIKR---- ---------- -ANNTFYGLS ENSTTRP00000013454/1-476 RIAKEEIFGP VQQIMKFKSL DDVIKR---- ---------- -ANNTFYGLS 451 500 BACU009500/1-685 TGHYRKPQNT TDHTTPQNNT EHHRHHRISQ NTTEDHTTGH YRKPQNTTDH bmy_20774T0/1-496 AGIFTKDID- ---------- ---------- ---------- ----KAITVS ENSP00000297785/1-501 AGVFTKDID- ---------- ---------- ---------- ----KAITIS ENSBTAP00000010661/1-501 AGIFTNDID- ---------- ---------- ---------- ----KAITVS ENSTTRP00000013454/1-476 AGIFTKDID- ---------- ---------- ---------- ----KAITVS 501 550 BACU009500/1-685 TTPQNNTEHH RTPRHHRTSQ NTTDHTTPQN TTDVTEYHRI PQHTTGPLNT bmy_20774T0/1-496 SALQAGTV-- ---------- ---------- ---------- ---------- ENSP00000297785/1-501 SALQAGTV-- ---------- ---------- ---------- ---------- ENSBTAP00000010661/1-501 SALQSGTV-- ---------- ---------- ---------- ---------- ENSTTRP00000013454/1-476 SALQAGTV-- ---------- ---------- ---------- ---------- 551 600 BACU009500/1-685 TEHHRRPLNN TEHQEHHRIP WNTTEHDWTS QKTMEHQRTP RNIMEHHRTP bmy_20774T0/1-496 ---------- ---------- -------WVN CYSVVSAQCP FG-------- ENSP00000297785/1-501 ---------- ---------- -------WVN CYGVVSAQCP FG-------- ENSBTAP00000010661/1-501 ---------- ---------- -------WVN CYSVVSAQCP FG-------- ENSTTRP00000013454/1-476 ---------- ---------- -------WVN CYSVVSAQCP FG-------- 601 650 BACU009500/1-685 RHHRTSQNTT DHTTPQNTTD VTEYHRIPQH TTGPLNTTEH HRRPLNNTEH bmy_20774T0/1-496 ---------- GFKMSGNGRE LGEYGL---- ---------- ---------- ENSP00000297785/1-501 ---------- GFKMSGNGRE LGEYGF---- ---------- ---------- ENSBTAP00000010661/1-501 ---------- GFKMSGNGRE LGEYGF---- ---------- ---------- ENSTTRP00000013454/1-476 ---------- GFKMSGNGRE ---------- ---------- ---------- 651 700 BACU009500/1-685 QEHHRIPWNT TEHDWTSQKT MEHQRTPRNI MEHHRTPRHH RTSQDT bmy_20774T0/1-496 ---------- --HEYTEVKT VTIKISQKNS ---------- ------ ENSP00000297785/1-501 ---------- --HEYTEVKT VTVKISQKNS ---------- ------ ENSBTAP00000010661/1-501 ---------- --HEYTEVKT VTIKISQKNS ---------- ------ ENSTTRP00000013454/1-476 ---------- ---------- ---------- ---------- ------