KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:44 2014 Check: 00 .. Name: ENSP00000374218/1-886 Len: 897 Check: 2554 Weight: 1.00 Name: ENSTTRP00000005901/1-775 Len: 897 Check: 866 Weight: 1.00 Name: ENSBTAP00000010667/1-870 Len: 897 Check: 8276 Weight: 1.00 Name: bmy_10297T0/1-697 Len: 897 Check: 2704 Weight: 1.00 Name: BACU019141/1-774 Len: 897 Check: 4576 Weight: 1.00 // 1 50 ENSP00000374218/1-886 MRAEEPCAPG APSALGAQRT PGPELRLSSQ LLPELCTFVV RVLFYLGPVY ENSTTRP00000005901/1-775 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010667/1-870 MPSEDPCPPG AR---GTERA PGREPRLPSQ LLPELYAFAA RVLFCLAPVY bmy_10297T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU019141/1-774 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000374218/1-886 LAGYLGLSIT WLLLGALLWM WWRRNRRGKL GRLAAAFEFL DNEREFISRE ENSTTRP00000005901/1-775 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010667/1-870 LAGYLGLSIT WLLLGVLLWM WWRRNRRGKL GRLAAAFEFL DNERQFISRE bmy_10297T0/1-697 ---------- ---------- ---------- ---------- ---------- BACU019141/1-774 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000374218/1-886 LRGQHLPAWI HFPDVERVEW ANKIISQTWP YLSMIMESKF REKLEPKIRE ENSTTRP00000005901/1-775 ---------I HFPDVERVEW ANKVISHIWP YLSMIIENKF REKLEPKIRE ENSBTAP00000010667/1-870 LLGQHLPAWI HFPDVERVEW ANKIISQIWP YLSMIMENKF REKLEPKIRE bmy_10297T0/1-697 ---------- ---------- ---------- ---MIMENKF REKLEPKIQE BACU019141/1-774 ---------I HFPDVERVEW ANKIIFQIWP YLSVIMENKF REKLEPKIQE 151 200 ENSP00000374218/1-886 KSIHLRTFTF TKLYFGQKCP RVNGVKAHTN TCNRRRVTVD LQICYIGDCE ENSTTRP00000005901/1-775 KNVHLRTFTF SKLYFGQKCP RINGIKVHTN KCNRRQVVLD LQICYIGDCE ENSBTAP00000010667/1-870 KSMHLRTFTF TKLYFGQKCP RVNGVKTHTD QRNRRQVVLD LQICYIGDCE bmy_10297T0/1-697 KNVHLRTFTF TKLYFGQKYP KINGIKVHTN QCNRRQVVLD LQICYIGDCE BACU019141/1-774 KNVHLRTFTF TKLYFGQKYP RINGIKVHTN QCNRRQVVLD LQICYIGDCE 201 250 ENSP00000374218/1-886 ISVELQKIQA GVNGIQLQGT LRVILEPLLV DKPFVGAVTV FFLQKPHLQI ENSTTRP00000005901/1-775 ISVELQKLQA GVNGIQLQGT LRLILEPLLV DKPFVGAVTM FFLQKPHLQI ENSBTAP00000010667/1-870 INVELQKIQA GVNGIQLQGT LRIILEPLLV DKPFVGAVTM FFLQKPHLQI bmy_10297T0/1-697 ISVELQKIQA GVNGIQLQGT LRVILEPLLV DKPFVGAVTM FFLQKPHLQI BACU019141/1-774 ISVELQKIQA GVNGIQLQGT LRVILEPLLV DKPFVGAVTM FFLQKPHLQI 251 300 ENSP00000374218/1-886 NWTGLTNLLD APGIN----- ----DVSDSL LEDLIATHLV L--PNRVTVP ENSTTRP00000005901/1-775 NWTGLTNLLD VPGIX----- ----XXXXXX XXXXXXXXXX X--XXXXXXX ENSBTAP00000010667/1-870 NWTGLTNLLD APGIN----- ----EMTDSL LEDLIAAHLV L--PNRVTVP bmy_10297T0/1-697 NWTGLTNLLD APGIN----- ----AMSDSL LEDLIAAHLV L--PNRVTVP BACU019141/1-774 NWTGLTNLLD APGINHCVPL DKLLHLSGLF LSKWGAWFFC LEAPERTVSP 301 350 ENSP00000374218/1-886 VKKGLDLTNL RFPLPCGVIR VHLLEAEQLA QKDNFLGLRG KSDPYAKVSI ENSTTRP00000005901/1-775 XXXXXXXXXX XXXXXXGVIR AHLLEGEKLA QKDNFLGLRG KSDPYAKVSI ENSBTAP00000010667/1-870 VKKGLDVTNL RFPLPCGVIR VHLLEAEKLA QKDSFLGIRG KSDPYAKVNI bmy_10297T0/1-697 VKKGLDLTNL RFPLPCGVIR VHLLEAEKLA QKDNFLGHQG KSDPYAKVSI BACU019141/1-774 ---------- GWGIFQGVIR VHLLEAEKLA QKDNFLGHQG KSDPYAKVSI 351 400 ENSP00000374218/1-886 GLQHFRSRTI YRNLNPTWNE VFEFMVYEVP GQDLEVDLYD EDTDRDDFLG ENSTTRP00000005901/1-775 GLQHFRSRTI YKNLNPTWNE VFEFIVYEVP GQDLVVDLYD EDPDKDDFLG ENSBTAP00000010667/1-870 GLQHFRSRTI YKNLSPTWNE VFEFIVYEVP GQDLEVDLYD EDPDKDDFLG bmy_10297T0/1-697 GLQHFRSRTI HKNLNPTWNE VFEFTVYEVP GQDLEVDLYD EDPDKDDFLG BACU019141/1-774 GLQHFRSRTI HKNLNPTWNE VFEFTVYEVP GQDLEVDLYD EDPDKDDFLG 401 450 ENSP00000374218/1-886 SLQICLGDVM TNRVVDEWFV LNDTTSGRLH LRLEWLSLLT DQEVLTEDHG ENSTTRP00000005901/1-775 SLQICLGDVM TNRVVDEWFV LKDTTSGQLH LRLEWLSLIT DPEAVIEDHG ENSBTAP00000010667/1-870 SLQICLGDVM TNRVVDEWFA LNNTTSGRLH LRLEWLSLIT EPDAVTEDHG bmy_10297T0/1-697 SLQICLGDVM TNRVVDEWFA LKDTTSGQLH LRLEWLSLIT DPEAVMEDHG BACU019141/1-774 SLQICLGDVM TNRVVDEWFA LKDTRSGQLH LRLEWLSLIT DPEAVMEDHG 451 500 ENSP00000374218/1-886 GLSTAILVVF LESACNLPRN PFDYLNGEYR AKKLSRFARN KVSKDPSSYV ENSTTRP00000005901/1-775 SFSTAILVVF LESACNLPRN PFDYLNGEYQ AKKLSKCARN KVSRDPSSYV ENSBTAP00000010667/1-870 SFSTAILVVF LESACNLPRS PFEYLNGEYQ AKKLSRFARN KVSRDPSSYV bmy_10297T0/1-697 SFSTAILVVF LESACNLPRN PFDYLNGEYQ AKKISRFARN KVSRDPSSYV BACU019141/1-774 SFSTAILVVF LESACNLPRH PFDYLNGDYR AKKLSRFARN KVSRDPSSYV 501 550 ENSP00000374218/1-886 KLSVGKKTHT SKTCPHNKDP VWSQVFSFFV HNVATERLHL KVLDDDQECA ENSTTRP00000005901/1-775 KLSVGKKTHL SKTCRHSKDP VWSQVFSFFV RNVAAEQLHL KVLDDDRECA ENSBTAP00000010667/1-870 RLSVGKKTHL SKTCPCSKDP VWSQVFSFFV HNVAAEQLHL KVLDDDQECA bmy_10297T0/1-697 KLSVGKKTHV SKTCLHSKDP VWSQVFSFFV HNVAAEQLHL KVLDDDQECA BACU019141/1-774 KLSVGKKTHL SKTCPHSKDP VWSQVFSFFV HNVATEQLHL KVLDDDQECA 551 600 ENSP00000374218/1-886 LGMLEVPLCQ ILPYADLTLE QRFQLDHSGL DSLISMRLVL RFLQVEEREL ENSTTRP00000005901/1-775 LGVLEFPLCQ ILPYADLTLE QRFQLDHSGL DSLISMRLVL RFLHLEEREL ENSBTAP00000010667/1-870 LGVLEFPLCQ ILPHADLTLE QRFQLDHSGL DSLISMRLVL RFLHLEEREL bmy_10297T0/1-697 LGVLEFPLCQ ILPCADLTLE QRFQLDHSGL DSLISMRLVL RFLHLEEREL BACU019141/1-774 LGVLEFPLCQ ILPCADLTLE QRFQLDHSGL DSLISMRLVL RFLHLEEREL 601 650 ENSP00000374218/1-886 GSPYTGPEAL KKGPLLIKKV ATNQGPKAQP QEEGPTDLPC PPDPASDTKD ENSTTRP00000005901/1-775 GSPYTGPEAL KKGPLLIKKV ATNQGSRAPP QGEGPADLPC PPDPASDIKQ ENSBTAP00000010667/1-870 GSPYTGPEAL KKGPLFIKKV TANQDPRAPP QGEGLTD--- -PDPASEIKQ bmy_10297T0/1-697 GSPYTGPEAL KKGPLLIKKA ATNQGPRAPP QGEGPADLPC PPDPASDIKQ BACU019141/1-774 GSPYTGPEAL KKGPLLIKKA ATNQGPRAPP QGEGPADLPC PPDPASDIKQ 651 700 ENSP00000374218/1-886 VSRSTTTTTS ATTVATEPTS QETGPEPKGK DSAKRFCEPI GEKKSPATIF ENSTTRP00000005901/1-775 ASKSTTATTS ATIAATKPSL QEMGPEPKGK DRARGFCAPK GEKTSVSTIF ENSBTAP00000010667/1-870 AAKN---TTS ATITATKPML EETGPEPKGK DSA-----PM G-KKSLATIY bmy_10297T0/1-697 ASKSTTATTS ATTAATKPTL QEMGPEPKGK DRARGFCAPM GEKKSVSTIF BACU019141/1-774 ASKSTTATTS ----ATKPTL QEMGPEPKGK DRARGFWAPM GEKKSVSTIF 701 750 ENSP00000374218/1-886 LTVPGPHSPG PIKSPRPMKC PASPFAWPPK RLAPSMSSLN SLASSCFDLA ENSTTRP00000005901/1-775 LAVPGPHSPG PIKS--PMKC PSSLFAQPPK RLAPSMSSLN SLASSCFDLT ENSBTAP00000010667/1-870 LAVPGPHSPG PIKSPRPMKC PASPFAWPPK GLAPSMSSLN SLASSCFDLT bmy_10297T0/1-697 LAVPGPHCPG PVKSPRPMKC PASLFAWPPK RLASSMSSLN SLASSCFDLT BACU019141/1-774 LAVPGPHCPG PVKSPRPMKC PASLLAWPPK RLASSMSSLN SLASSCFDLT 751 800 ENSP00000374218/1-886 DISLNIEGGD LRRRQLGEIQ LTVRYVCLRR CLSVLINGCR NLTPCTSSGA ENSTTRP00000005901/1-775 DVSLNTEDGD LRHQGLGEIQ LTVRYVCLQH CLSVLINGCR NLMPCTSRGA ENSBTAP00000010667/1-870 DISLNIEGGE LGHRGLGEIQ LTVRYVCLRR CLSVLINGCR NLTPCTSSGA bmy_10297T0/1-697 DVSLNTEDED LGHQGLGEIQ LAVRYVCLQR CLSVLINGCR ---------- BACU019141/1-774 DVSLNTEDED LRHQGLGEIQ LTVRYVCLQH CLSVLINGCR NLMPCSSSGA 801 850 ENSP00000374218/1-886 DPYVRVYLLP ERKWACRKKT SVKRKTLEPL FDETFEFFVP MEEVKKRSLD ENSTTRP00000005901/1-775 DPYVRVYLLP ERRWASRKKT SVKRKTLDPL FDERFEFFVP LDEVKKMSLD ENSBTAP00000010667/1-870 DPYVRVYLLP ERRWASRKKT SVKRKTLEPR FDETFEFFVS MDEVQKRSLD bmy_10297T0/1-697 ---------- ---------- ---------- ----FEFFVP LDEVKKRSLD BACU019141/1-774 DPYVRVYLLP ERRWASRKKT SVKRKTLDPL FDETFEFFLP LDEVKKRSLD 851 900 ENSP00000374218/1-886 VAVKNSRPLG SHRRKELGKV LIDLSKEDLI KGFSQWYELT PNGQPRS ENSTTRP00000005901/1-775 IAVKNSRPLG SHRRKELGKV LIDLSKEDLN KGFSQWYELT PDGQPRS ENSBTAP00000010667/1-870 VAVKNSRPLG SHRRKELGKV LIDLSKEDLI KGFSQWYELT PDGQPRS bmy_10297T0/1-697 VAVKNSRPLG SHRRKELGKV LIDLSKEDLN KGFSQ----- ------- BACU019141/1-774 VAVKNSRPLG SHRRKELGKV LIDLSKEDLN KGFSQWYALT PDGQPRS