KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:56 2014 Check: 00 .. Name: ENSP00000263642/1-1025 Len: 1030 Check: 6196 Weight: 1.00 Name: ENSTTRP00000013071/1-1021 Len: 1030 Check: 8155 Weight: 1.00 Name: ENSBTAP00000010703/1-1021 Len: 1030 Check: 9263 Weight: 1.00 Name: bmy_06227T0/1-712 Len: 1030 Check: 8433 Weight: 1.00 Name: BACU010080/1-1019 Len: 1030 Check: 828 Weight: 1.00 // 1 50 ENSP00000263642/1-1025 -MSNGYSTDE NFRYLISCFR ARVKMYIQVE PVLDYLTFLP AEVKEQIQRT ENSTTRP00000013071/1-1021 MSSDGYSADK NFCYLISCFR ARVKMYIQVE PVLDYLTFLP ADVKEQIQRT ENSBTAP00000010703/1-1021 MSSDGSSTDK NFCYLISCFR ARVKRYIQVE PVLDYLTFLP PEVKEHIQRT bmy_06227T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU010080/1-1019 MSSDGCSADK NFCYLISCFR ARVKMYIQVE PVLDYLTFLP AEVKEQIQRT 51 100 ENSP00000263642/1-1025 VATSGNMQAV ELLLSTLEKG VWHLGWTREF VEALRRTGSP LAARYMNPEL ENSTTRP00000013071/1-1021 AATTGNMQAA DLLLNTLEKG AWPLGWTRMF VDALRLAGNP LAARYVNPEL ENSBTAP00000010703/1-1021 AATTGDIQAA DLLLNTLERG NWPLGWARMF VEALRQAGNP LAARYVNPEL bmy_06227T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU010080/1-1019 AATTGNMQAA DLLLDTLEKG VWPLGWARMF VDALRLAGNP LAARYVNPDL 101 150 ENSP00000263642/1-1025 TDLPSPSFEN AHDEYLQLLN LLQPTLVDKL LVRDVLDKCM EEELLTIEDR ENSTTRP00000013071/1-1021 TDLPSPSFEN AHDECLQLLN LLQPTLVDKL LVTDVLDRCV MEELLTVEDR ENSBTAP00000010703/1-1021 TDLPSPSSEN AHDECLQLLN LLQPTLVDKL LVADVLDKCV EEKLLTIEDR bmy_06227T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU010080/1-1019 TDLPSPSFEN AHDECLQLLN LLQPTLVDKL LVTDVLDTCV EEELLTVEDR 151 200 ENSP00000263642/1-1025 NRIAAAENNG NESGVRELLK RIVQKENWFS AFLNVLRQTG NNELVQELTG ENSTTRP00000013071/1-1021 NRVSAAENNG NEAGVRELLK RIVQKENWFS TFVTVLRETG NDALAQELTG ENSBTAP00000010703/1-1021 NRVSAAENNG NEAGVRELLK RIVQKENWFS TFLTILRQTG NDALAREFTG bmy_06227T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU010080/1-1019 NRVSAAENNG NEAGVRELLK RIVQKENWFS TFLTVLRQTG NYALAQELTG 201 250 ENSP00000263642/1-1025 SDCSESNAEI ENLSQVDGPQ VEEQLLSTTV QPNLEKEVWG MENNSSESSF ENSTTRP00000013071/1-1021 TDCYESNAES ESLSPEDGPE -KESLLLATD QRSL--EAWD IENNSL-PSF ENSBTAP00000010703/1-1021 TDCCEGSTES ENLSQEDGLE VKEPLLLATD QPNL--EVLD IENSSLESSF bmy_06227T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU010080/1-1019 TDYNESNEES ENLSPEDGPE VKEPLHLVTD QPSL--EVWD RENNSSEPSF 251 300 ENSP00000263642/1-1025 ADSSVVSESD TSLAEGSVSC LDESLGHNSN MGSDSGTMGS DSDEENVAAR ENSTTRP00000013071/1-1021 ADSSVASESD TSLAEGSVSC LDESLGHNSN MGSDSGTMGN DSDEENAVPR ENSBTAP00000010703/1-1021 ADSSIVSESD TSLAEGSVSC LDESLGHNSN MGSDSGTMGS DSDDENVAQR bmy_06227T0/1-712 ---------- ---------- ---------- MGSDSGTMGS DSDEENAVQR BACU010080/1-1019 ADSSVASESD TSLAEGSVSC LDESLGHNSN MGSDSGTMGS DSDEENAVQR 301 350 ENSP00000263642/1-1025 ASPEPELQLR PYQMEVAQPA LEGKNIIICL PTGSGKTRVA VYIAKDHLDK ENSTTRP00000013071/1-1021 SSPEPEMHLR PYQLEVAQPA LEGKNIIICL PTGSGKTRVA VYIAKDHLDK ENSBTAP00000010703/1-1021 ASPEPELNLR PYQLEVAQPA LEGKNIIICL PTGSGKTRVA VYIAKDHLD- bmy_06227T0/1-712 ASPEPEMHLR PYQLEVAQPA LEGKNIIICL PTGSGKTRVA AYIAKDHLDK BACU010080/1-1019 ASPEPEMHLR PYQLEVAQPA LEGKNIIICL PTGSGKTRVA AYIAKDHLDK 351 400 ENSP00000263642/1-1025 KKKASEPGKV IVLVNKVLLV EQLFRKEFQP FLKKWYRVIG LSGDTQLKIS ENSTTRP00000013071/1-1021 KKKASELGKV IVLVNKVPLV EQLFRKEFEP FLKKWYHVTR LSGDTQLKIT ENSBTAP00000010703/1-1021 KKKASEHGKV MVLVNKVPLV EQLFRKEFKP FLKKWYHVTR LSGDTQLKIT bmy_06227T0/1-712 KKKASELGKV MVLVNKVPLV EQLFRKEFEP FLKKWYHVTG LSGDTQLKIT BACU010080/1-1019 KKKTSELGKV MVLVNKVPLV EQLFRKEFEP FLKKWYHVTR LSGDTQLKIT 401 450 ENSP00000263642/1-1025 FPEVVKSCDI IISTAQILEN SLLNLENGED AGVQLSDFSL IIIDECHHTN ENSTTRP00000013071/1-1021 FPKVVKSHDV IISTAQILEN SLLNSEEGED DGVQLSDFSL IIIDECHHTN ENSBTAP00000010703/1-1021 FPEVVKSHDV IISTAQILEN SLLNSEEGED DGIELSDFSL IIIDECHHTN bmy_06227T0/1-712 FPEVVKSHDV IISTAQILEN SLLNLEEGKD DGVQLSDFSL IIIDECHHTN BACU010080/1-1019 FPEVVKSHDV IISTAQILEN SLLNLEEGED DGVQLSDFSL IIIDECHHTN 451 500 ENSP00000263642/1-1025 KEAVYNNIMR HYLMQKLKNN RLKKENKPVI PLPQILGLTA SPGVGGATKQ ENSTTRP00000013071/1-1021 KEEVYNNIMR RYLNQKLKNN RLEKEDKPVI PLPQILGLTA SPGVGGARKQ ENSBTAP00000010703/1-1021 KEAVYNNIMR RFLKQKLKNN KLKKENKPVI PLPQIVGLTA SPGVGGAKKQ bmy_06227T0/1-712 KEAVYNNIMR RYLNQKLKNN RLEKKNKPVI PLPQILGLTA SPGVGAAKKQ BACU010080/1-1019 KEAVYNNIMR RYLNQKLKNN RLEKKNKPVI PLPQILGLTA SPGVGGAKKQ 501 550 ENSP00000263642/1-1025 AKAEEHILKL CANLDAFTIK TVKENLDQLK NQIQEPCKKF AIADATREDP ENSTTRP00000013071/1-1021 AKAEEHILKI CANLDAFTIK TVKENTDQLK DQIKEPCKKF VIADDTKEDP ENSBTAP00000010703/1-1021 AKAEEHILKI CANLDAVTIK TVKQNINLLK EQIKEPCKKF VIADDTKKDP bmy_06227T0/1-712 AKAEEHILKI CANLDAFTIK TVKENTNQLK DQIKEPCKKF VIADDAKEDP BACU010080/1-1019 AKAEEHILKI CANLDAFTIK TVKENTNQLK DQIKEPCKKF VIADDTKEDP 551 600 ENSP00000263642/1-1025 FKEKLLEIMT RIQTYCQMSP MSDFGTQPYE QWAIQMEKKA AKEGNRKERV ENSTTRP00000013071/1-1021 FKDKLLEIMT KIQSFCQISP MSDFGTQPYE QWLIQMEKQA AREGNRKDRV ENSBTAP00000010703/1-1021 FKDKLLEIMT KIQTFCQINP MSDFGTQPYE QWLIQMEKKA AKEGNRKDRV bmy_06227T0/1-712 FKDKLLEIMT KIQTFCQISP MSDFGTQPYE QWLIQMEKKA AREGNRKDRV BACU010080/1-1019 FKGKLLEIMT KIQTFCQISP MSDFGTQPYE QWLIQMEKKA AREGNRKDRV 601 650 ENSP00000263642/1-1025 CAEHLRKYNE ALQINDTIRM IDAYTHLETF YNEEKDKKFA V-IEDDSDEG ENSTTRP00000013071/1-1021 CAEHLRKYNE ALQINDTIRM IDAYNHLETF YNDEKEKKFA V-LGDDSDES ENSBTAP00000010703/1-1021 CAEHLRKYNE ALQINDTIRM IDAYNHLETF YNDEKEKKFA VLLGDDSDES bmy_06227T0/1-712 CAEHLRKYNE ALQINNTIRM IDAYNHLETF YNDEKEKKFA V-LGDDSDES BACU010080/1-1019 CAEHLRKYNE ALQINDTIRM IDAYNHLETF YNDEKEKKFA V-LGDD---S 651 700 ENSP00000263642/1-1025 GDDEYCDGDE --DEDDLKKP LKLDETDRFL MTLFFENNKM LKRLAENPEY ENSTTRP00000013071/1-1021 DD----DGDD DGDAGDEKKP LKLDETDEFL MTLFWENKKM LKKLAVNPEH ENSBTAP00000010703/1-1021 DD----NGDD --DVGDGKPP LKLHETDDFL ISLFWGNKKK LKKLAQNPEH bmy_06227T0/1-712 DD----DGDD E-DAGDEKKP LKLDESDGFL MTLFL----- --------EH BACU010080/1-1019 DD----DGDD E-DAGDEKKP LKLDESDGFL MTLFLENKKM LKKLAVNPEH 701 750 ENSP00000263642/1-1025 ENEKLTKLRN TIMEQYTRTE ESARGIIFTK TRQSAYALSQ WITENEKFAE ENSTTRP00000013071/1-1021 ENEKLTKLRN TIMEQYTRAE ESARGIIFTK TRQSAYALSQ WITENEKFAE ENSBTAP00000010703/1-1021 ENEKLIKLRN TIMEQYSRTE GSARGIIFTK TRQSAYALSQ WIIENEKFSE bmy_06227T0/1-712 ENEKLTKLRN TIMEQYTRAE ESARGIIFTK TRQSAYALSQ WITENEKFAE BACU010080/1-1019 ENEKLTKLRN TIMEQYTRAE ESARGIIFTK TRQSAYALSQ WITENEKFAE 751 800 ENSP00000263642/1-1025 VGVKAHHLIG AGHSSEFKPM TQNEQKEVIS KFRTGKINLL IATTVAEEGL ENSTTRP00000013071/1-1021 VGVKAHHLIG AGHSSEFKPM TQXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000010703/1-1021 VGVKAHHLIG AGHSSEFKPM TQNEQKEVIS KFRTGKINLL IATTVAEEGL bmy_06227T0/1-712 VGVKAHHLIG AGHSSEFKPM TQNEQKEVIS KFRTGKINLL IATTVAEEGL BACU010080/1-1019 VGVKAHHLIG AGHSSEFKPM TQNEQKEVIS KFRTGKINLL IATTVAEEGL 801 850 ENSP00000263642/1-1025 DIKECNIVIR YGLVTNEIAM VQARGRARAD ESTYVLVAHS GSGVIEHETV ENSTTRP00000013071/1-1021 XXXXXXXXXX XXXXXXXXXX XXSRGRARAD ESTYVLVAQR GSGVIERETV ENSBTAP00000010703/1-1021 DIKECNIVIR YGLVTNEIAM VQARGRARAD ESTYVLVAQS GSGVVERETV bmy_06227T0/1-712 DIKECNIVIR YGLVTNEIAM VQARGRARAD ESTYVLVAQR GSGVIEREAV BACU010080/1-1019 DIKECNIVIR YGLVTNEIAM VQARGRARAD ESTYVLVAQR GSGVIEREAV 851 900 ENSP00000263642/1-1025 NDFREKMMYK AIHCVQNMKP EEYAHKILEL QMQSIMEKKM KTKRNIAKHY ENSTTRP00000013071/1-1021 NDFREKMMYK AIDRVQNMKP EEYARKILEL QMQSILEKKM KIKRSIAKQF ENSBTAP00000010703/1-1021 NDFREKMMYK AIDRVQNMKP EEYAHKILEL QMQSIMEKKM KTKRSIAKQF bmy_06227T0/1-712 NDFRETMMYK AIDRVQNMKP EEYNHKILEL QMQSILEKKM KIKRSIAKQF BACU010080/1-1019 NDFREKMMYK AIDRVQNMKP EEYTHKILEL QMQSILEKKM KIKRSIAKQF 901 950 ENSP00000263642/1-1025 KNNPSLITFL CKNCSVLACS GEDIHVIEKM HHVNMTPEFK ELYIVRENKA ENSTTRP00000013071/1-1021 KDNPSLISFL CKNCNVLACS GEDIHVIEKM HHVNMTPEFK KLYIVRGNKA ENSBTAP00000010703/1-1021 KGKPSLINFL CKNCGVPACS GEDIHVIEKM HHVNMTPEFK KLYLVRGNKA bmy_06227T0/1-712 KDNPSLIXFL CKNCSVLACS GEDIHVIEKM HHVNMTPEFK KLYIVRGNKA BACU010080/1-1019 KDNPSLISFL CKNCSVLACS GEDIHVIEKM HHVNMTPEFK KLYIVRGNKA 951 1000 ENSP00000263642/1-1025 LQKKCADYQI NGEIICK-CG QAWGTMMVHK GLDLPCLKIR NFVVVFKNNS ENSTTRP00000013071/1-1021 LQTKFADYQT NGEIICKECG QAWGTMMVHK GLDLPCLKIK NFVVIFKNNL ENSBTAP00000010703/1-1021 LQTMCVDYQT NGEIICNKCG QAWGTMMVHK GLDLPCLKIK NFVVVFQNNL bmy_06227T0/1-712 LQTKFADYQT NGEIICKECG Q--------- ---------- NFVVVFKNNL BACU010080/1-1019 LQTKFADYQT NGEIICKKCG QAWGTMMVHK GLDLPCLKIK NFVVVFKNDL 1001 1050 ENSP00000263642/1-1025 TKKQYKKWVE LPITFPNLDY SECCLFSDED ENSTTRP00000013071/1-1021 PRKQYKKWVE LPITFPDLNY SEYCLFSDED ENSBTAP00000010703/1-1021 PKKQYKKWVE LPITFPDLNY SEYCLFSDED bmy_06227T0/1-712 PKKQYKKWVE LPMTFPDLNY SEYCLFSDED BACU010080/1-1019 PKKQYKKWVE LPMTFPDLNY SEYCLFSDED