KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:57 2014 Check: 00 .. Name: ENSP00000392257/1-337 Len: 337 Check: 2557 Weight: 1.00 Name: ENSBTAP00000010705/1-307 Len: 337 Check: 7236 Weight: 1.00 Name: ENSTTRP00000003937/1-300 Len: 337 Check: 4920 Weight: 1.00 Name: bmy_05568T0/1-252 Len: 337 Check: 6941 Weight: 1.00 Name: BACU014204/1-205 Len: 337 Check: 2144 Weight: 1.00 // 1 50 ENSP00000392257/1-337 MARPQPCGPP HARCGSPSLP ERPLQVKVVG LFSCPNFQIA KSAAENLKNN ENSBTAP00000010705/1-307 MASQQHSVP- ---CISRSPP EQPLQVKVVG LFKSSSFQIA KSAAESLKSN ENSTTRP00000003937/1-300 MASS------ -----SQTPP EQPLQVKVVG LFKSSSFQIA KSAAESLKSN bmy_05568T0/1-252 MASS------ -----SQTPP EQPLQVKVVG LFKSSSFQIA KSAAESLKSN BACU014204/1-205 MASS------ -----SQTPP EQPLQVKVVG LFKSSSFQIA KSAAE----- 51 100 ENSP00000392257/1-337 HPSKFEDPIL VPLQEFAWHQ YLQEKKRELK NETWEYSSSV ISFVNGQFLG ENSBTAP00000010705/1-307 YPSNFEDPII IPVQEFAWHQ YLQEKKRELK NEVWEYSSYV MCFINDKLLG ENSTTRP00000003937/1-300 YPSKFEDPII VPVQEFAWDQ YLQEKKRELK KEIWEYSSYV MCFINDQLLG bmy_05568T0/1-252 YPSKFEDPII VPVQEFAWDQ YLQEKKRELK NEIWEYSSYV MCFINDQLLG BACU014204/1-205 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000392257/1-337 DALDLQKWAH EVWDIVDIKP SALYDALTED FSAKFLRDTK HDFVFLDICI ENSBTAP00000010705/1-307 DALDLQKWAH KVWDIVDFKP PALYEALTVD YSAKFLRDTK HNFVFLDISI ENSTTRP00000003937/1-300 DALDLQKWAH KVWDIVDFKP PALYEALTMD YSAKFLRDTK HDFVFLDISI bmy_05568T0/1-252 DALDLQKWAH ---------- ---------- ---------K HNFVFLDISI BACU014204/1-205 ---------- ---------- ---------- ---------- HNFVFLDISI 151 200 ENSP00000392257/1-337 DSSPIGRLIF ELYCDVCPKT CKNFQVLCTG KAGFSQRGIR LHYKNSIFHR ENSBTAP00000010705/1-307 DLYPIGRLIF ELYSDTCPKT CKNFQILCTG KAGFSQSGIK LHYTGSIFHR ENSTTRP00000003937/1-300 DFYPIGRLIF ELYCDACPKT CKNFQILCTG KAGFSQSGIR LHYTGSIFHR bmy_05568T0/1-252 DFYPIGRLIF ELYCDTCPKT CKNFQILCTG KAGFSQSGIR LHYTGSIFHR BACU014204/1-205 DFYPIGRLIF ELYCDTCPKT CKNFQILCTG KAGFSQSGIR LHYTGSIFHR 201 250 ENSP00000392257/1-337 IVQNGWIQGG DIVYGKGDNG ESIYGPTFEE LYGSLKRSVK RQKESRGVGK ENSBTAP00000010705/1-307 VVRNGWVQGG DIVAGKGDNG ESIYGPTFE- ---------- ---------- ENSTTRP00000003937/1-300 VVRNGWIQGG DIVAGKGDGG ESIYGPTFE- ---------- ---------- bmy_05568T0/1-252 VVRNGWIQGG ---------- ---------- ---------- ---------- BACU014204/1-205 VVRNGWIQGG DIVAGRGDGG ESIYGPTFE- ---------- ---------- 251 300 ENSP00000392257/1-337 IEKYRDENFS VPHNKRGVLG MANKGRHSNG SQFYITLQAT PYLDRKFVAF ENSBTAP00000010705/1-307 -----DENFS VPHNKRGVLG MVNKGRHSNG SQFYITLQAA PYLDKKYVAF ENSTTRP00000003937/1-300 -----DENFS IPHNKRGVLG MVNKGHHSNG SQFYITLQAT PYLDRKYVAF bmy_05568T0/1-252 -----DENFS IPHNKRGVLG MVNKGRHSNG SQFYITLQAA PYLDRKYVAF BACU014204/1-205 -----DENFS IPHNKRGVLG MVNKGRHSNG SQFYITLQAA PYLDRKYVAF 301 350 ENSP00000392257/1-337 GQLIEGTEVL KQLELVPTQN ERPIHMCRIT DSGDPYA ENSBTAP00000010705/1-307 GQLIEGTDVL HHLESVPTEN ERPIQNCVIT ASGQLYA ENSTTRP00000003937/1-300 GQLIEGTDVL HQLELVPTEN ERPIQQCVII DSGEFYA bmy_05568T0/1-252 GQLIEGTDVL HQLELVPTEN ERPIQQCVII DSGELYA BACU014204/1-205 GQLIEGTDVL HQLELVPTEN ERPIQQCVII DSGELYA