KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:41:57 2014 Check: 00 .. Name: ENSP00000258052/1-423 Len: 482 Check: 3773 Weight: 1.00 Name: ENSTTRP00000003938/1-423 Len: 482 Check: 5873 Weight: 1.00 Name: ENSBTAP00000010706/1-423 Len: 482 Check: 822 Weight: 1.00 Name: bmy_05569T0/1-467 Len: 482 Check: 3899 Weight: 1.00 Name: BACU018858/1-419 Len: 482 Check: 2238 Weight: 1.00 // 1 50 ENSP00000258052/1-423 ---------- ---------- ---------- ---------- -MKPNFSLRL ENSTTRP00000003938/1-423 ---------- ---------- ---------- ---------- -MKPNFSLRL ENSBTAP00000010706/1-423 ---------- ---------- ---------- ---------- -MKPNFTLRL bmy_05569T0/1-467 RGLPGRAGAG RPPVRGAPRG RPPARRCPQR GPATEGPAPG RCCPSAPAVT BACU018858/1-419 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000258052/1-423 RIFNLNCWGI PYLSKHRADR MRRLGDFLNQ ESFDLALLEE VWSEQDFQYL ENSTTRP00000003938/1-423 KVFNLNCWGI PYLSKHRADR VKRLGDFLNR ESFDLALLEE VWSEQXXXXX ENSBTAP00000010706/1-423 RVFNLNCWGI PYLSKHRADR VKRLGDFLNM ESFDLALLEE VWSEQDFQYL bmy_05569T0/1-467 SPALFVLRGI PYLSKHRADR VKRLGDFLNR ESFDLALLEE VWSEQDFQYL BACU018858/1-419 --------GI PYLSKHRADR VKRLGDFLNR ESFDLALLEE VWSEQDFQYL 101 150 ENSP00000258052/1-423 RQKLSPTYPA AHHFR----- SGIIGSGLCV FSKHPIQELT QHIYTLNGYP ENSTTRP00000003938/1-423 XXXXXXXXXX XXXXX----- XGIIGSGLCV FSKHPIQEFT QHVFTLNGYP ENSBTAP00000010706/1-423 RQKLLPTYPA AHYFR----- SGIIGSGLCV FSKHPIQEFT QHVFTLNGYP bmy_05569T0/1-467 RQKLLPAYPA AHYFRRTWLF SGIIGSGLCV FSKHPIQEFT QHVFTLNGYP BACU018858/1-419 RQKLLPAYPA AHYFR----- SGIIGSGLCV FSKHPIQEFT QHVFTLNGYP 151 200 ENSP00000258052/1-423 YMIHHGDWFS GKAVGLLVLH LSGMVLNAYV THLHAEYNRQ KDIYLAHRVA ENSTTRP00000003938/1-423 YMIHHGDWFC GKAVGLLVLR LGGLVLNAYV THLHAEYNRQ KDIYLAHRVA ENSBTAP00000010706/1-423 YMIHHCDWFC GKAVGLLVLH LSGLVLNAYV THLHAEYNRQ KDTYLAHRVA bmy_05569T0/1-467 YMIHHGDWFC GKAVGLLVLH LGGLVLNAYV THLHAEYNRQ KDIYLAHRVA BACU018858/1-419 YMIHHGDWFC GKAVGLLVLH LGGLVLNAYV THLHAEYNRQ KDIYLAHRVA 201 250 ENSP00000258052/1-423 QAWELAQFIH HTSKKADVVL LCGDLNMHPE DLGCCLLKEW TGLHDAYLET ENSTTRP00000003938/1-423 QAWELAQFIH HTSKKADVVL LCGDLNLHPK DLGFRLLKEW TGLQDAYLET ENSBTAP00000010706/1-423 QAWELAQFIH HTSKKADVVL LCGDLNLHPK DLGCRLLKEW TGLHDAYLET bmy_05569T0/1-467 QAWELAQFIH HTSKKADVVL LCGDLNLHPK DLGCRLLKEW TGLHDAFLET BACU018858/1-419 QAWELAQFIH HTSKKADVVL LCGDLNLHPK DLGCRLLKEW TGLHDAFLET 251 300 ENSP00000258052/1-423 RDFKGSEEGN TMVPKNCYVS QQELKPFPFG VRIDYVLYKA VSGFYISCKS ENSTTRP00000003938/1-423 RDFKGPEEGC TMVPQNCYVN QQELEQFPLG IRIDYVLYKA VSGLYIFCKT ENSBTAP00000010706/1-423 RDFKGSEEGC TMVPKNCYVK HQELGPFPLG IRIDYVLYKA VSGLYIFCKT bmy_05569T0/1-467 RDFKGPEEGC TMVPENCYVS RQELEQFPLG IRIDYVLYKA VSGLYISCKT BACU018858/1-419 RDFKGPEEGC TMVPENCYVN RQELEQFPLG IRIDYVLYKA VSGLYISCKT 301 350 ENSP00000258052/1-423 FETTTGFDPH RGTPLSDHEA LMATLFVRHS PPQQNPSSTH ---------- ENSTTRP00000003938/1-423 LRTTTGHEPH GGSPLSDHEA LMATLCVRHS PPQHNPSPTH ---------- ENSBTAP00000010706/1-423 FKTTTGHDPY SGPPFSDHEA LMATLCVRHS PPQHNPSPTH ---------- bmy_05569T0/1-467 LRTTTGHEPH SGSPLSDHEA LMATLCVRHS PPQHNPSPTH ---------- BACU018858/1-419 LRTTTGHEPH SGSPLSDHEA LMATLCVRHS PPQHNPSPTH DPHSPSPLPR 351 400 ENSP00000258052/1-423 ---GPAERSP LMCVLKEAWT ELGLGMAQAR WWATFASYVI GLGLLLLALL ENSTTRP00000003938/1-423 ---GPAERSP LISVLREAWT ELDQGMAQGR WWATIAGYVI GLGLLLLALL ENSBTAP00000010706/1-423 ---GPAESSP LTSVLREAWA EVDQGMAQAH WWATMAGYAV GLGLLLLALL bmy_05569T0/1-467 -----AERSP LISVLREAWT ELDQGMAQGR WWATIAGYVI GLGLLLLALL BACU018858/1-419 FVLGPAERSP LISVLREAWA ELDQGMAQGR WWATIAGYVI GLGLLLLALL 401 450 ENSP00000258052/1-423 CVLAAGGGAG EAAILLWTPS VGLVLWAGAF YLFHVQEVNG LYRAQAELQH ENSTTRP00000003938/1-423 CALAAGGEIR EVAVLLWTSS VGLVLGAGAF YLFHVQEAKG LCRARAELQH ENSBTAP00000010706/1-423 CALAAGGWIR EAALLLWTPS VGLVLGAGAF YLFHVQEAKG LCRTRAELQH bmy_05569T0/1-467 CALAAGGEIR EVAVLLWTPS VGLVLGAGAF YLFHVQEAKG LCRARAELQH BACU018858/1-419 CALAAGGEIR EVAVLLWTPS VGLVLGAGAF YLFHVQEAKG LCRARAELQH 451 500 ENSP00000258052/1-423 VLGRAREAQD LGPEPQPALL LGQQEGDRTK EQ ENSTTRP00000003938/1-423 VLGRAREAQD LGSESQPAGL LGQQEVDRAE EQ ENSBTAP00000010706/1-423 VLGRAREAQD LGPESQPALL LGQQERERAE EQ bmy_05569T0/1-467 VLGRAREAQD LGPESQPALL LGQQEGDRAE EQ BACU018858/1-419 VLGRAREAQD LGPESQPALL LGQQEGDRAE EQ