KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:01 2014 Check: 00 .. Name: ENSBTAP00000010723/1-1467 Len: 1498 Check: 2283 Weight: 1.00 Name: ENSTTRP00000004106/1-1420 Len: 1498 Check: 8416 Weight: 1.00 Name: ENSP00000351684/1-1478 Len: 1498 Check: 7845 Weight: 1.00 Name: bmy_20762T0/1-864 Len: 1498 Check: 1497 Weight: 1.00 // 1 50 ENSBTAP00000010723/1-1467 LGAGVNARSR RAFFLGSGLA SRETLRDWSR CLAACLSPWN VSPLIFVENV ENSTTRP00000004106/1-1420 ---------- ---------- ---------- ---------- --------NV ENSP00000351684/1-1478 MGDAADPREM RKTFIVPAIK PFDHY-DFSR AKIACNLAWL VAKAFGTENV bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000010723/1-1467 PEELREPFYT DQYDQEHIKP PVVGLLLSAE LYCRAGSLIL RSDAAKPLLG ENSTTRP00000004106/1-1420 PEELREPFYT DQYDQEHIKP PVVNLLLSAE LYCRAGSLIL KSDAAKPLLG ENSP00000351684/1-1478 PEELQEPFYT DQYDQEHIKP PVVNLLLSAE LYCRAGSLIL KSDAAKPLLG bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000010723/1-1467 HDAVIQALAQ KGLYVTDQEK LVTERDLHKK PIQMLSSHVC IYSTLTLSIT ENSTTRP00000004106/1-1420 HDAVIQALAQ KGLYVTDQEK LVTERDLHKK PIQM-SAHLA MMDTLMMAYT ENSP00000351684/1-1478 HDAVIQALAQ KGLYVTDQEK LVTERDLHKK PIQM-SAHLA MIDTLMMAYT bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000010723/1-1467 LPCCAVRPVK LCLKQSRIHF HNTDLENNIQ HYKLFLINNL DLNNNLKNLK ENSTTRP00000004106/1-1420 VEMVSVEKVA ACAQQYSAFF QATDLPYDIE DAVMYWINK- -VNEHLKDIM ENSP00000351684/1-1478 VEMVSIEKVI ACAQQYSAFF QATDLPYDIE DAVMYWINK- -VNEHLKDIM bmy_20762T0/1-864 ---------M ACTCYFTVIF -------DYK FKLMFFYFK- -VNEHLKDIM 201 250 ENSBTAP00000010723/1-1467 KSSQESENSR IRKIPASHKS PSKWFWKLVP ARYRKEQTLL KQLPCIPLVE ENSTTRP00000004106/1-1420 EQTQKLKDHH TVEASGGQKS PSKWFWKLVP XXXXXXXXXX XXXXXXXXXX ENSP00000351684/1-1478 EQEQKLKEHH TVEAPGGQKA ---------- -RYRKEQTLL KQLPCIPLVE bmy_20762T0/1-864 EQEQKLKDHH TVEASGGQKA ---------- -RYRKEQTLL KQLPCIPLVE 251 300 ENSBTAP00000010723/1-1467 NLLKDGSDGC ALAALIHFYC PGVVRLEDIC LKETMSLADS LYNLQLIQEF ENSTTRP00000004106/1-1420 XXXXXXXXXX XXXXXXXXXX XXXXXXXXIC LKETMSLADS LYNLQLIQEF ENSP00000351684/1-1478 NLLKDGTDGC ALAALIHFYC PDVVRLEDIC LKETMSLADS LYNLQLIQEF bmy_20762T0/1-864 NLLKDGSDGC ALAALIHFYC PGVVRLEDIC LKETMSLADS LYNLQLIQEF 301 350 ENSBTAP00000010723/1-1467 CQEYLNQCCH FTLEDMLYAA SSIKSNYLVF MAELFWWFEV VKPSFVQPRV ENSTTRP00000004106/1-1420 CQEYLNQCCH FALEDMLYAA SSIKSNYLVF MAELFWWFEV VKPSFVQPRD ENSP00000351684/1-1478 CQEYLNQCCH FTLEDMLYAA SSIKSNYLVF MAELFWWFEV VKPSFVQPRV bmy_20762T0/1-864 CQEYLNQCCH FTLEDMLYAA SSIKSNYLVF MAELFWWFEV VKPSFVQPRD 351 400 ENSBTAP00000010723/1-1467 AHPQGAEPVE DLPSLPVSNA APQDALDSSD LTPGSGEGAA FTHSRPHLPS ENSTTRP00000004106/1-1420 ARPQGAEPVD DLPSDPVLTA AQRNALDSSD FTP-SGEGAA LTHSRPHLPS ENSP00000351684/1-1478 VRPQGAEPVK DMPSIPVLNA AKRNVLDSSS DFPSSGEGAT FTQSHHHLPS bmy_20762T0/1-864 ARPQGAEPVD DLPSVPVLNA AQRNALDSSD FTP------- ---------- 401 450 ENSBTAP00000010723/1-1467 RHLQPQPHPS ASGGIRRSSS MSYVDGFIGT WPKEKRSSVH GVSFDISFDK ENSTTRP00000004106/1-1420 RHSRPQAHPS ASGGIRRSSS MSYVDGFIGT WPKEKRSSVH GVSFDISFDK ENSP00000351684/1-1478 RYSRPQAHSS ASGGIRRSSS MSYVDGFIGT WPKEKRSSVH GVSFDISFDK bmy_20762T0/1-864 RRSRPQAHPS ASGGIRRSSS MSYVDSFIGT WPKEKRSSVH GVSFDISFDK 451 500 ENSBTAP00000010723/1-1467 ENAVQRSTSN RGITRSLSND GLALSNHRAA RNSRKNLAFK PVDGEEHAAG ENSTTRP00000004106/1-1420 ESSIQRSTPN QGITRSISNE GLTLNNSRVS KNIRKNLSFK PVNGEEGAGS ENSP00000351684/1-1478 EDSVQRSTPN RGITRSISNE GLTLNNSHVS KHIRKNLSFK PINGEEEAES bmy_20762T0/1-864 ESSIQRSTPN QGITRSISNE GLTLNNSRVS KNIRKNLSFK PVNGEEGAGS 501 550 ENSBTAP00000010723/1-1467 IAEERTVGSH GDLTTYAPRS TGELNSNEST HYRFPNGALH NSVLLDEVGN ENSTTRP00000004106/1-1420 IEEELQVGSH GHLTAYVPLN TNEVGSKQNM AHRLPNGALQ SRVLLDEFGS ENSP00000351684/1-1478 IEEELNIDSH SDLKSCVPLN TNELNSNENI HYKLPNGALQ NRILLDEFGN bmy_20762T0/1-864 IEEELHVGSH GDLTAYVPLN TDELDSKQNV HHRLPNGALQ NRVLLEEFGS 551 600 ENSBTAP00000010723/1-1467 QVGTPSIEEA LQIIHDTEKP AHTPRPGQLA NGFFLHSQEL SFLNAGVPRS ENSTTRP00000004106/1-1420 QVGTPSIEEA LQIIHDTEQP AHTPRPDQLA NGFFLHSQDM GVLNCSVPRS ENSP00000351684/1-1478 QIETPSIEEA LQIIHDTEKS PHTPQPDQIA NGFFLHSQEM SILNSNIKLN bmy_20762T0/1-864 QVGTPSIEEA LQIIHDTEKP AHTPRPDQLA NGFFLHSQEV GVLHSSVPRG 601 650 ENSBTAP00000010723/1-1467 QSSPENVGDT RGALSPVTDT TEVDTGIHVP SEDIPETMDE DSSLRDYTVS ENSTTRP00000004106/1-1420 QSSPESMADT KGASSPVTDN TEVDTGIHVP SEDIPETMDE DSSLRDYTVS ENSP00000351684/1-1478 QSSPDNVTDT KGALSPITDN TEVDTGIHVP SEDIPETMDE DSSLRDYTVS bmy_20762T0/1-864 QSSPESVADT KGASSPVTDN TEVDTGIHVP SEDIPETMDE DSSLRDYTVS 651 700 ENSBTAP00000010723/1-1467 LDSDMDDASK FLQDYDVRPG STREALSPCP STVSTKSQPG SSASSSSGVK ENSTTRP00000004106/1-1420 LDSDVDDTSK FLQDY----- NPREALSPCP STVSTKSQPG SSASSSSGVK ENSP00000351684/1-1478 LDSDMDDASK FLQDYDIRTG NTREALSPCP STVSTKSQPG SSASSSSGVK bmy_20762T0/1-864 LDSDVDDASK FLPDY----- NPREAPSPCP STVSTRSQPG SSASSSSGVK 701 750 ENSBTAP00000010723/1-1467 MTSFAEQKFR KLNHTDGKSS GSSSQKTTPE GSELNIPHVV AWAPAPEDAG ENSTTRP00000004106/1-1420 MTSFAEQKFR KLNHTDGKSS GSSSQKTTPE GSELNIPHVV AWAQTPEDTG ENSP00000351684/1-1478 MTSFAEQKFR KLNHTDGKSS GSSSQKTTPE GSELNIPHVV AWAQIPEETG bmy_20762T0/1-864 MTSFAEQKFR KLNHTDGKSS GSSSQKTTPE GSELNIPHVV AWAQTPEDTG 751 800 ENSBTAP00000010723/1-1467 LPHGRDTTQL LASEVVHLRM KLEEKRRAIE AQKKKMEAAF TRQRQKMGRT ENSTTRP00000004106/1-1420 LPHGRDTTQL LASEVVHLRM KLEEKRRAIE AQKKKMDAAF TKQRQKMGRT ENSP00000351684/1-1478 LPQGRDTTQL LASEMVHLRM KLEEKRRAIE AQKKKMEAAF TKQRQKMGRT bmy_20762T0/1-864 LPHGRDTTQL LASEVVHLRM KLEEKRRAIE AQKKKMEAAF TKQRQKMGRT 801 850 ENSBTAP00000010723/1-1467 AFLTVVKKKG DGVSPLREEA AGAEDEKVYT ERPREKEPQK ANGPRSKSPA ENSTTRP00000004106/1-1420 GFL--VERKG DGPSPPREEA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000351684/1-1478 AFLTVVKKKG DGISPLREEA AGAEDEKVYT DRAKEKESQK TDGQRSKSLA bmy_20762T0/1-864 AFLTV----- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000010723/1-1467 DPKEGAESPA GRWPPAPSAP GDPEGRWSPA GPAEEPPQDG ELLEHTRSIE ENSTTRP00000004106/1-1420 XXXXXXXXXX XXXXXXXXXX XXXXXPWSPA CPAEEPPQDG ELLEHTRSIE ENSP00000351684/1-1478 DIKESMENPQ AKWLKSPTTP IDPEKQWNLA SPSEETLNEG EILEYTKSIE bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000010723/1-1467 RLNASLHALQ REMRRLALQQ EALMHMREQQ AWVISPPPPS PHRPAR---- ENSTTRP00000004106/1-1420 RLNASLLVLQ REMQRLALQQ ELLMHMREQQ AWVISPPPPS PHRPAQGSPP ENSP00000351684/1-1478 KLNSSLHFLQ QEMQRLSLQQ EMLMQMREQQ SWVISPPQPS PQKQIRDFKP bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000010723/1-1467 ---------- -----DPPRP AHPSPQAAPR KSASFSVKNQ RTPRPSELKI ENSTTRP00000004106/1-1420 A--------- ---AAEAPRP AHPSPQPAAR KSASFSVKTQ RTPRPNELKL ENSP00000351684/1-1478 SKQAGLSSAI APFSSDSPRP THPSPQSSNR KSASFSVKSQ RTPRPNELKI bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000010723/1-1467 TPLHRTLTPP RSVDSLPRLR RFSPSQVPIQ TRSFVCLGDD GEPRAQESGR ENSTTRP00000004106/1-1420 TPLHRTLTPP RSVDSLPRLR RFSPSQVPIQ TRSFVCLGGG GEPEAKESGR ENSP00000351684/1-1478 TPLNRTLTPP RSVDSLPRLR RFSPSQVPIQ TRSFVCFGDD GEPQLKESKP bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000010723/1-1467 KDGVKEEE-- ---EGSAGP- ------PEHG EARPPPSAAP EGPAALASEV ENSTTRP00000004106/1-1420 KEGAEDEEGE EEGEGSTGPR EQHGHIPEDE EAQAPPPAAP EGLA------ ENSP00000351684/1-1478 KEEVKKEE-- ---LESKGTL EQRGHNPEEK EIKPFESTVS EVLSLPVTET bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000010723/1-1467 AHPAPSEDPP SQPAQLPSKP SVPPVAHKSV NLIEVSLSDL KPHEKADVSV ENSTTRP00000004106/1-1420 -RPARSEDRV SQPAEPPCRP AFPPAAPKSA NLIEVSLSDL KAPEKADVSV ENSP00000351684/1-1478 VCLTPNEDQL NQPTEPPPKP VFPPTAPKNV NLIEVSLSDL KPPEKADVPV bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000010723/1-1467 EKYDAESDKE QVDEDQKVCC GFFFKDDQKA ENDMAMKRAA LLEKRLRREK ENSTTRP00000004106/1-1420 EKYDGESDKE PVDDDQKVCC GFFFKXDQKA ENDMSMKRAA LVEKRLRREK ENSP00000351684/1-1478 EKYDGESDKE QFDDDQKVCC GFFFKDDQKA ENDMAMKRAA LLEKRLRREK bmy_20762T0/1-864 ---------- ---------- -----DDQKA ENDMAMKRAA LLEKRLRREK 1201 1250 ENSBTAP00000010723/1-1467 ETQLRKQQLE AEMEHRKEET RRRTEEERQK KEDERARREF IRQEYLRRKQ ENSTTRP00000004106/1-1420 ETQLRKQQLE AEMEHKKEET RRKTEEERQK KEDERARREF IRQEYLRRKQ ENSP00000351684/1-1478 ETQLRKQQLE AEMEHKKEET RRKTEEERQK KEDERARREF IRQEYMRRKQ bmy_20762T0/1-864 ETQLRKQQLE AEMEHKKEET RRKTEEERQK KEDERARREF IRQEYLRRKQ 1251 1300 ENSBTAP00000010723/1-1467 LKLMEDMDSV LKPRPQVARQ KKQRPKSIHR DHLESPKTPV KGPPVSSLSL ENSTTRP00000004106/1-1420 LKLMEDMDTV IKPRPQGAKQ KKQRPKSIHR DHIESPKTPI KGPPVSSLSL ENSP00000351684/1-1478 LKLMEDMDTV IKPRPQVVKQ KKQRPKSIHR DHIESPKTPI KGPPVSSLSL bmy_20762T0/1-864 LKLMEDMDTV IKPRPQGAKQ KKQRPKSIHR DHIESPKTPI KGPP------ 1301 1350 ENSBTAP00000010723/1-1467 ASLNTGDNES LQSGKRTPRS ESVEGFLSPS RCGSRNGEKD WENASTTSSV ENSTTRP00000004106/1-1420 ASLNTGDSES VHSGRRTPRS ESVEGFLSPS RCGSRNGEKD WENASTTSSV ENSP00000351684/1-1478 ASLNTGDNES VHSGKRTPRS ESVEGFLSPS RCGSRNGEKD WENASTTSSV bmy_20762T0/1-864 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000010723/1-1467 ASGTEYTGPK LFKEPSAKSN KHIIQNALAH CCLAGKVNEG QKKKILEEME ENSTTRP00000004106/1-1420 ASGTEYTGPK LFKEPSAKSN KHIIQNALAH CCLAGKVNEG QKKKILEEME ENSP00000351684/1-1478 ASGTEYTGPK LYKEPSAKSN KHIIQNALAH CCLAGKVNEG QKKKILEEME bmy_20762T0/1-864 -------GPK LFKEPSAKSN KHIIQNALAH CCLAGKVNEG QKKKILEEME 1401 1450 ENSBTAP00000010723/1-1467 KSDANNFLIL FRDSGCQFRS LYAYCPETEE ISKLTGIGPK SVTKKMIEGL ENSTTRP00000004106/1-1420 KSDANNFLIL FRDSGCQFRS LYTYCPETEE INKLTGIGPK SITKKMIEGL ENSP00000351684/1-1478 KSDANNFLIL FRDSGCQFRS LYTYCPETEE INKLTGIGPK SITKKMIEGL bmy_20762T0/1-864 KSDANNFLIL FRDSGCQFRS LYTYCPETEE INKLTGIGPK SITKKMIEGL 1451 1500 ENSBTAP00000010723/1-1467 YKYNSDRKQF SHIPAKTLSA SVDAITIHSH LWQAKRPVTP KKLLPTKA ENSTTRP00000004106/1-1420 YKYNSDRKQF SHIPAKTLSA SVDAITIHSH LWQTKRPVTP KKLLPTKA ENSP00000351684/1-1478 YKYNSDRKQF SHIPAKTLSA SVDAITIHSH LWQTKRPVTP KKLLPTKA bmy_20762T0/1-864 YKYNSDRKQF SHIPAKTLSA SVDAITIHSH LWQTKRPVTP KKLLPTKA