KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:02 2014 Check: 00 .. Name: bmy_08199T0/1-461 Len: 583 Check: 3901 Weight: 1.00 Name: ENSP00000302177/1-520 Len: 583 Check: 7587 Weight: 1.00 Name: ENSTTRP00000016210/1-495 Len: 583 Check: 7588 Weight: 1.00 Name: ENSBTAP00000010729/1-519 Len: 583 Check: 8821 Weight: 1.00 Name: BACU020533/1-495 Len: 583 Check: 2057 Weight: 1.00 // 1 50 bmy_08199T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000302177/1-520 MATTSTTGST LLQPLSNAVQ LPIDQVNFVV CQLFALLAAI WFRTYLHSSK ENSTTRP00000016210/1-495 ---------- ---------- -----VNFVV CQVFALLAAI WFRTYLHSSK ENSBTAP00000010729/1-519 -APSSCSPAD LLDQSLRPLE LSTDQVNFVV CQLFALLAAI WFRTYLHSSK BACU020533/1-495 ---------- ---------- -----VNFVV CQLFALLAAI WFRTYLHSSK 51 100 bmy_08199T0/1-461 ---------- ---------- ---------- ---------- ---------R ENSP00000302177/1-520 TSSFIRHVVA TLLGLYLALF CFGWYALHFL VQSGISYCIM IIIGVENMHN ENSTTRP00000016210/1-495 TSSFIRHVVA TLLGLYLALF CFGWYALHFL VQSGISYCIM IIIGVENMHK ENSBTAP00000010729/1-519 TSSFIRHVVA TLLGLYLALF CFGWYALHFL VQSGISYCIM VIIGVENMHK BACU020533/1-495 TSSFIRHVVA TLLGLYLALF CFGWYALHFL VQSGISYCIM IIIGVENMHT 101 150 bmy_08199T0/1-461 YCFVFALGYL TVCQITRVYI FDYGQYSADF SGPMMIITQK ITSLAYEIHD ENSP00000302177/1-520 YCFVFALGYL TVCQVTRVYI FDYGQYSADF SGPMMIITQK ITSLACEIHD ENSTTRP00000016210/1-495 YCFVFALGYL TVCQITRVYI FDYGQYSADF SGXXXXXXXX XXXXXXXXXX ENSBTAP00000010729/1-519 YCFVFALGYL TVCQITRVYI FDYGQYSADF SGPMMIITQK ITSLAYEIHD BACU020533/1-495 YCFVFALGYL TVCQITRVYI FDYGQYSADF SGPMMIITQK ITSLAYEIHD 151 200 bmy_08199T0/1-461 GMFRKDEELT PSQRGLAVSK FHGSESSVLA NYDTYLDVVR LRCALTTWHC ENSP00000302177/1-520 GMFRKDEELT SSQRDLAV-- ---------- ---------- ---------- ENSTTRP00000016210/1-495 XMFRKDEELT PSQRGLAV-- ---------- ---------- ---------- ENSBTAP00000010729/1-519 GMFRKDEELT PSQRGLAV-- ---------- ---------- ---------- BACU020533/1-495 GMFRKDEELT PSQRGLAV-- ---------- ---------- ---------- 201 250 bmy_08199T0/1-461 FGLEISGVEN GALLPEHKGL FGSFVTTGHL SRRMPSLLEY LSYNCNFMGI ENSP00000302177/1-520 ---------- ---------- ---------- -RRMPSLLEY LSYNCNFMGI ENSTTRP00000016210/1-495 ---------- ---------- ---------- -RRMPSLLEY LSYNCNFMGI ENSBTAP00000010729/1-519 ---------- ---------- ---------- -RRMPSLLEY LSYNCNFMGI BACU020533/1-495 ---------- ---------- ---------- -RRMPSLLEY LSYNCNFMGI 251 300 bmy_08199T0/1-461 LAGPLCSYKD YITFIEGRSY HMTPSGEHGK EEIQYEKTEP SPNLAVIQKL ENSP00000302177/1-520 LAGPLCSYKD YITFIEGRSY HITQSGENGK EETQYERTEP SPNTAVVQKL ENSTTRP00000016210/1-495 LAGPLCSYKD YITFIEGRSY HVTQSGEHGK EEIQYEKTEP SPNVAVIQKL ENSBTAP00000010729/1-519 LAGPLCSYKD YITFIEGRSY HMTQSGEDGK EEIQYERTEP SPNVAVIQKL BACU020533/1-495 LAGPLCSYKD YITFIEGRSY HMTQSGEHGK EEIQYEKTEP SPNLAVIQKL 301 350 bmy_08199T0/1-461 LVCGLSLLFH LTISKTLPVA YNIDEHFQAT ASWPTKVIYL YVSLLAARPK ENSP00000302177/1-520 LVCGLSLLFH LTICTTLPVE YNIDEHFQAT ASWPTKIIYL YISLLAARPK ENSTTRP00000016210/1-495 LVCGLSLLFH LTVSKTLPVE YNIDEHFLAT ASWPTKVIYL YVSLLAARPK ENSBTAP00000010729/1-519 LVCGLSLLFH LIISKMLPVE YNIDEHFQAT ASWPTKVIYL YVSLLAARPK BACU020533/1-495 LVCGLSLLFH LTISKTLPVA YNIDEHFQAT ASWPTKVIYL YVSLLAARPK 351 400 bmy_08199T0/1-461 YYFAWTLADA INNAAGFGFR GYDKNGAARW DLISNLRIQQ IEMSTSFKMF ENSP00000302177/1-520 YYFAWTLADA INNAAGFGFR GYDENGAARW DLISNLRIQQ IEMSTSFKMF ENSTTRP00000016210/1-495 YYFAWTLADA INNAAGFGFR GYDKNGAARW DLISNLRIQQ IEMSTSFKMF ENSBTAP00000010729/1-519 YYFAWTLADA INNAAGFGFR GYDKNGAARW DLISNLRIKQ IEMSTSFKMF BACU020533/1-495 YYFAWTLADA INNAAGFGFR GYDKNGAARW DLISNLRIQQ IEMSTSFKMF 401 450 bmy_08199T0/1-461 LDNWNIQTAL WLKRVCYERT SLSPTIQTFI LSAIWHGVYP GYYLTFLTGM ENSP00000302177/1-520 LDNWNIQTAL WLKRVCYERT SFSPTIQTFI LSAIWHGVYP GYYLTFLTGV ENSTTRP00000016210/1-495 LDNWNIQTAL WLKRVCYERA SSSPTIQTFI LSAIWHGVYP GYYLTFLTGV ENSBTAP00000010729/1-519 LDNWNIQTAL WLKRVCYERA SLSPTTQTFF LSAIWHGVYP GYYLTFLTGM BACU020533/1-495 LDNWNIQTAL WLKRVCYERT SLSPTIQTFI LSAIWHGVYP GYYLTFLTGV 451 500 bmy_08199T0/1-461 VMTLAARAMK RG-------- ---------- PW----PGLX NVDGPFPMAD ENSP00000302177/1-520 LMTLAARAMR NNFRHYFIEP SQLKLFYDVI TWIVTQVAIS YTVVPFVLLS ENSTTRP00000016210/1-495 VMTLAARAVR NNFRHHFIEP PQLKLLYDVI TWIATQIAIS YTVVPFVLLS ENSBTAP00000010729/1-519 LMTLVARAVR NNFRHYFIEP PQLKFLYDVI TWIATQIAIS YTVVPFVLLS BACU020533/1-495 VMTLAARAVR NNFRHHFIEP PQLKLLYDVI TWIATQIAIS YTVVPFVLLS 501 550 bmy_08199T0/1-461 TTCEAG-CSS WYYSLHSASI LVVLLFPVKK TQRGKNXHEN VQLSRSKKFD ENSP00000302177/1-520 IKPSLTFYSS WYYCLHILGI LVLLLLPVKK TQRRKNTHEN IQLSQSKKFD ENSTTRP00000016210/1-495 VKPSFMFYSS WYYSLHSAGI LVLLLLPVKK TQRGKNTHEN VQLSRSKKFD ENSBTAP00000010729/1-519 VKASLMFYSS WYYSLHFACI LVLLLLPVKK TQKGKSTHEN VQLSRSKKFD BACU020533/1-495 IKPSFMFYSS WYYSLHSASI LVLLLFPVKK TQRGKNTHEN VQLSRSKKFD 551 600 bmy_08199T0/1-461 ERENSLGQNS FSTTNNVCNQ NQEIASRHSS LKQ ENSP00000302177/1-520 EGENSLGQNS FSTTNNVCNQ NQEIASRHSS LKQ ENSTTRP00000016210/1-495 ERGNSLGQNS FSTTNNVCNQ NQERASRHPS LKQ ENSBTAP00000010729/1-519 EKDNSLGQNS FFRTNSVCNQ NQEITSRHSS LKQ BACU020533/1-495 ERENSLGQNS FSTTNNVCNQ NQEIASRHSS LKQ