KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:03 2014 Check: 00 .. Name: ENSP00000234701/1-914 Len: 1680 Check: 3970 Weight: 1.00 Name: ENSBTAP00000010730/1-909 Len: 1680 Check: 4442 Weight: 1.00 Name: BACU004619/1-1677 Len: 1680 Check: 6627 Weight: 1.00 Name: ENSTTRP00000000003/1-912 Len: 1680 Check: 9222 Weight: 1.00 Name: bmy_16488T0/1-668 Len: 1680 Check: 9646 Weight: 1.00 // 1 50 ENSP00000234701/1-914 MGPFKSSVFI LILHLLEGAL SNSLIQLNNN GYEGIVVAID PNVPEDETLI ENSBTAP00000010730/1-909 MGSFKNSVFI LVLHLLEGAL SDSLIQLNNN GYEGIVIAID PNVPEDETLI BACU004619/1-1677 MGSFKNSVFI LVLHLLEGAL SDSLIQLNNN GYEGIVIAVD PNVPEDETLI ENSTTRP00000000003/1-912 MGSFKNSVFI LVLHLLEGAL SDSLIQLNNN GYEGIVIAVD PNVPEDETLI bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000234701/1-914 QQIKDMVTQA SLYLLEATGK RFYFKNVAIL IPETWKTKAD YVRPKLETYK ENSBTAP00000010730/1-909 QHIKDMVTDA SPYLFEATEK RFYFKNVAIL IPENWKTKPE YVKPKLETYK BACU004619/1-1677 QQIKDMVTEA SPYLFEATEK RFYFKNVAIL IPQNWNTKPE YVKPKLETYK ENSTTRP00000000003/1-912 QQIKDMVTEA SPYLFEATEK RFYFKNVAIL IPQNWNTKPE YVKPKLETYK bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000234701/1-914 NADVLVAEST PPGNDEPYTE QMGNCGEKGE RIHLTPDFIA GKKLAEYGPQ ENSBTAP00000010730/1-909 NADVLVAEPN PTGNDGPYTE QMGGCGEKGD RIYLTPDFLA GKKSRQYGPQ BACU004619/1-1677 NADVLVAEPN PTGNDGPYTE HMGGCGEKGS KIYLTPGFLA GKKLLQYGSQ ENSTTRP00000000003/1-912 NADVLVAEHN PTGNDGPYTE HMGGCGEKGN KIYLTPGFLA GKKLLQYGPQ bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000234701/1-914 GRAFVHEWAH LRWGVFDEYN NDEKFYLSNG RIQAVRCSAG ITGTNVVKKC ENSBTAP00000010730/1-909 GRAFVHEWAH LRWGVFNEYN NDQKFYLSNK RRKPVVCSEG FTGETVIQKC BACU004619/1-1677 GRVFVHEWAH LRWGVFNEYD NDQKFYLSNR RKKPVICSAT ISGKNVLQKC ENSTTRP00000000003/1-912 GRVFVHEWAH LRWGVFNEYD NDQKFYLSNK RKKPVICPST ITGKNVLQKC bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000234701/1-914 QGGSCYTKRC TFNKVTGLYE KGCEFVLQSR QTEKASIMFA QHVDSIVEFC ENSBTAP00000010730/1-909 QGGSCVTQPC KLDRKTGLYE EGCEFIPHKD QREKASIMYS QNMSLVVEFC BACU004619/1-1677 QGGSCVTQTC KSDRVTGLYE KGCEFIPDEV QTEKASIMYS QNIRSVVEFC ENSTTRP00000000003/1-912 QGGSCVTQSC KSDRVTGLYE KGCEFIPNEF QTEKASIMYS QSIRSVVEFC bmy_16488T0/1-668 ---------- ---------- ---------- ---------- -----VVEFC 251 300 ENSP00000234701/1-914 TEQNHNKEAP NKQNQKCNLR STWEVIRDSE DFKKTTPMTT QPPNPTFSLL ENSBTAP00000010730/1-909 TEKNHNREAP NEQNKKCNHR STWEVIQDSE DFKTTTPMTT QPPSPTFSLL BACU004619/1-1677 TEKNHNKEAP NQQNRKCNLR STWEVIQDSE DFKKTTPMTT QPPKPTFSLL ENSTTRP00000000003/1-912 TEKNHNKEAP NEQNKKCNLR STWEVIQGSE DFKKTTPMTT QPPKPTFSLL bmy_16488T0/1-668 TEKNHNKGAP NQQNRKCNLR STWEVIQDSE DFKKTTPMTT QPPKPTFSLL 301 350 ENSP00000234701/1-914 QIGQRIVCLV LDKSGSMATG NRLNRLNQAG QLFLLQTVEL GSWVGMVTFD ENSBTAP00000010730/1-909 QIGQRIVCLV LDKSGSMTIG NRLKRLNQAG KLFLLQTVEQ GSWVGMVTFD BACU004619/1-1677 QIGQRIVCLV LDKSGSMTIG DRLKRLNQAG KLFLLQTVEQ GSWVGMVTFD ENSTTRP00000000003/1-912 QIRQRIVCLV LDKSGSMTTG DRLKRLNQAG KLFLLQTVEQ GSWVGMVTFD bmy_16488T0/1-668 QIGQRIVCLV LDKSGSMTIG DRLKRLNQAG KLFLLQTVEQ GSWVGMVTFD 351 400 ENSP00000234701/1-914 SAAHVQNELI QINSGSDRDT LAKRLPAAAS GGTSICSGLR SAFTVIRKKY ENSBTAP00000010730/1-909 SAAYVQSELV QINSATERDT LTKSLPTTAS GGTSICSGLR SAFTVIKKKY BACU004619/1-1677 SAAYVKSELV QINSATERDT LTRSLPTAAS GGTSICSGIQ SAFTVIRKKY ENSTTRP00000000003/1-912 SAAYVKSELV QINSATERDT LARSLPTVAS GGTSICSGIQ SAFTVIRKKY bmy_16488T0/1-668 SAAYVKSELV QINSATERDT LTRSLPTAAS GGTSICSGIQ SAFTVIRKKY 401 450 ENSP00000234701/1-914 PTDGSEIVLL TDGEDNTISG CFNEVKQSGA IIHTVALGPS AAQELEELSK ENSBTAP00000010730/1-909 PTDGAEIILL TDGEDNTISA CFDEVKQSGA IIHTVALGPS AAQELEQMSK BACU004619/1-1677 PTDGSEIVLL TDGEDNTISS CFNKVKQSGV IIHTVALGPS AAQELEELSK ENSTTRP00000000003/1-912 PTDGSEIVLL TDGEDSTISS CFNEVKQSGV IIHTVALGPS AARELEELSK bmy_16488T0/1-668 PTDGSEIVLL TDGEDNTISS CFNEVKQSGV IIHTVALGPS AAQELEELSK 451 500 ENSP00000234701/1-914 MTGGLQTYAS DQVQNNGLID AFGALSSGNG AVSQRSIQLE SKGLTLQNSQ ENSBTAP00000010730/1-909 MTGGLQTYAS DQVQNNGLVD AFAALSSGNK AVSQRSIQLE SRGLTLQNSQ BACU004619/1-1677 MTGGLQTYAS DQVQNNGLMD AFGALSSGNG AVSQRSIQLE SRGLTLQNSQ ENSTTRP00000000003/1-912 MTGGLQTYAS DQVQNNGLMD AFGALSSGNG AVSQRSIQLE SKGLTLQNSQ bmy_16488T0/1-668 MTGGLRTYAS DQVQNNGLMD AFGALSSGNG AVSQRSIQLE SRGLTLQNSQ 501 550 ENSP00000234701/1-914 WMNGTVIVDS TVGKDTLFLI TWTMQPPQIL LWDPSGQKQG GFVVDKNTKM ENSBTAP00000010730/1-909 WMNGTVTVDS TVGKDTLFLI TWTTDLPQIL LWDPSGNKQD GFIVDKNTKM BACU004619/1-1677 WLNGTVIVDS TVGKDTLFLI TWTTDTPQIL LWDPSGKKQD GFLVDTHIKM ENSTTRP00000000003/1-912 WLNGTVIVDS TVGKDTLFLI TWTTDIPQIL LWDPSGKKQD GFLVDTYIKM bmy_16488T0/1-668 WLNGTVIVDS TVGKDTLFLI TWTTDTPQIL LWDPSGKKQD GFLVDTHIKM 551 600 ENSP00000234701/1-914 AYLQIPGIAK VGTWKYSLQA SSQTLTLTVT SRASNATLPP ITVTSKTNKD ENSBTAP00000010730/1-909 AYLQIPDIAK IGVWKYSLQA SSQTLTLTVT SRASSATLPP VTVTSKMNKD BACU004619/1-1677 AYLQIPGTAK VGIWKYSLQA RSQTLTLTVT SRASSGTLPP VTVTSKMNKD ENSTTRP00000000003/1-912 AYLQIPGIAK VGIWKYSLQA SSQTLTLTVT SRASSGTLPP VTVTSKMNKD bmy_16488T0/1-668 AYLQIPGTAK VGIWKYSLQA RSQTLTLTVT SRASSGTLPP VTVTSKMNKD 601 650 ENSP00000234701/1-914 TSKFPSPLVV YANIRQGASP ILRASVTALI ESVNGKTVTL ELLDNGAGAD ENSBTAP00000010730/1-909 TGKFPSPMVV YVKIHQGTKP ILRSKVTALI ESVDGKTVTL ELLDNGAGAD BACU004619/1-1677 TGKFPSPMVV YAKIHQGALP ILRAKVTALI ESVNGKTVTL ELLDNGAGAD ENSTTRP00000000003/1-912 TGKFPSPMVV YAKIHQGSLP ILRAKVTALI ESVDGKTVTL ELLDNGAGAD bmy_16488T0/1-668 TGKFPSPMVV YAKIHQGALP ILRAKVTALI ESVNGKTVTL ELLDNGAGAD 651 700 ENSP00000234701/1-914 ATKDDGVYSR YFTTYDTNGR YSVKVRALGG VNAARRRVIP QQSGALYIPG ENSBTAP00000010730/1-909 ATKDDGIYSR YFTAYDTNGR YSAKVWALGG VNTASQNASP QRNGAMYIPG BACU004619/1-1677 ATKDDGVYSR YFTAYDINGR YSVKVWALGG VNTDTQKGIP QQIGAMYIPG ENSTTRP00000000003/1-912 ATKDDGVYSR YFTAYDTNGR YSVKVWALGG VDTATQKGIP QQTRAMYIPG bmy_16488T0/1-668 ATKDDGVYSR YFTAYDTNGR YSVKVWALGG VNTDTQKGIP QQTGAMYIPG 701 750 ENSP00000234701/1-914 WIENDEIQWN PPRPEINKDD VQHKQVCFSR TSSGGSFVAS DVPNAPIPDL ENSBTAP00000010730/1-909 WIENGEVKWN PPRPEINKD- -QGKQVCFSR TSSGGSFVAT DVPKAPIPDL BACU004619/1-1677 WIENGQVKWN PPRPEINKDD LQGKQVCFSR TSSGGSFVAS NVPKAPIPDL ENSTTRP00000000003/1-912 WIENGQVKWN PPRPEINKDD LQGKQVCFSR TSSGGSFVAS DVPKAPIPDL bmy_16488T0/1-668 WIENGQVKWN PPRPEINKDD LQGKQECFSR TSSGGSFVAS NVPKAPIPDL 751 800 ENSP00000234701/1-914 FPPGQITDLK AEIHGGSLIN LTWTAPGDDY DHGTAHKYII RISTSILDLR ENSBTAP00000010730/1-909 FPPCKITDLK AKIEGDNLIN LTWTAPGDDY DHGRADKYII RISTNILELR BACU004619/1-1677 FPPCKITDLK AKIQGDSLIN LTWTAPGDDY DHGRAHKYII GISTNILDLR ENSTTRP00000000003/1-912 FPPCKITDLK AKIQGDSLIN LTWTAPGDDY DHGRAHKYII GISTNILDLR bmy_16488T0/1-668 FPPCKITDLK AKIQGDSLIN LTWTAPGDDY DNGRAHKYII GISTNILDLR 801 850 ENSP00000234701/1-914 DKFNESLQVN TTALIPKEAN SEEVFLFKPE NITFENGTDL FIAIQAVDKV ENSBTAP00000010730/1-909 DKFNESLQVN TTDLIPNEAN SEEVFVFKPE TITFTNGTDL FIAIQAVDEV BACU004619/1-1677 DKFNDSLQVN TTDLIPKEAN SEEVFVFKPE DITFTNGTDL FIAVQAVDKV ENSTTRP00000000003/1-912 DKFNDSLQVN TTHLSPKEAN SEEVFVFKPE NITFTNGTDL FIAVQAVDKV bmy_16488T0/1-668 DKFNDSLQVN TTDLIPKEAN SEEVFVFKPE NITFTNGTDL FIAVQAVDKV 851 900 ENSP00000234701/1-914 DLKSEISNIA R--------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 SLKSEISNIA Q--------- ---------- ---------- ---------- BACU004619/1-1677 NLKSEISNIA QEKRQKAYEE LQNGQCNSNC RGHTKLMHDS GLNVQVWEQE ENSTTRP00000000003/1-912 NLKSEISNIA Q--------- ---------- ---------- ---------- bmy_16488T0/1-668 NLKSEISNIA Q--------- ---------- ---------- ---------- 901 950 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- --------VS ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- --------VS BACU004619/1-1677 QERANILLCR IEKKYLELQE FTILKAMSKK RRGSNTSLVR LDNNGYEGII ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- --------VS bmy_16488T0/1-668 ---------- ---------- ---------- ---------- --------VS 951 1000 ENSP00000234701/1-914 LFIPPQTPPE T--------- ---PSPDETS AP-------- ---------- ENSBTAP00000010730/1-909 LFIPPEIPPE K--------- ---PSP---S LP-------- ---------- BACU004619/1-1677 IAIDPAVPED ETLIEKIKAD VLVSPP---T LPGRDQPYTK QFTACEEKGE ENSTTRP00000000003/1-912 LFIPPETPPE T--------- ---PSP---S LP-------- ---------- bmy_16488T0/1-668 LFIPPENPPE T--------- ---PSP---S LP-------- ---------- 1001 1050 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 YIHFTPDFVL GKKQNEFGPS GRVCVHEWAH LRWGVFDEYN DDEPFYSAKS ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 KKIEATRHDY LNCLKLLQAG FNRLNRMNQA AKHFLLQTIE NGSWVGMVHF ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000234701/1-914 ---------- ---------- ---------- ------CPNI --------HI ENSBTAP00000010730/1-909 ---------- ---------- ---------- ------CPDI --------SI BACU004619/1-1677 DNTAYIKSNL IQIISSNERR KLLESLPTVA TGGTSICSGI KSGFQVIRNA ENSTTRP00000000003/1-912 ---------- ---------- ---------- ------CPDI --------NT bmy_16488T0/1-668 ---------- ---------- ---------- ------CPDI --------NI 1151 1200 ENSP00000234701/1-914 NSTIPG---- ---------- ---------- ---IHILKI- ---------- ENSBTAP00000010730/1-909 NSTIPG---- ---------- ---------- ---IHILKI- ---------- BACU004619/1-1677 NSQIDGSEIV LLTDGEDSSA KTCIDEVKQS EAIIHFIALG PNADEAVREM ENSTTRP00000000003/1-912 NSTIPG---- ---------- ---------- ---IHILKI- ---------- bmy_16488T0/1-668 NSTIPG---- ---------- ---------- ---IHILKI- ---------- 1201 1250 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 SNVTGGEHLF ATDEAQNNGL IDAFAALASG NTDASQQSLQ LESKGLKLNS ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 NGWMNGTVII DSTVGKDTFF LITWNQQPPI ISVLDPTGKS VGTLTEDSAS ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000234701/1-914 ---------- ----MWKW-- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ----MWKW-- ---------- ---------- ---------- BACU004619/1-1677 KMAYLSIPGT TKVGVWTYSL QAKANSETLT ITVNSRAANS SVPPITVKAK ENSTTRP00000000003/1-912 ---------- ----MWKW-- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ----MWKW-- ---------- ---------- ---------- 1351 1400 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 MNKDTNSFPS PMIVYAEILQ GYIPILGANV TAFIESNTGN TEVLELLDNG ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 AGADSFKNDG VYSRYFTTFK ENGRYSLKVR AHGGENAVMR NLRHPLNRAA ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 YVPGWVVNGT IEANLPRPEI DENTQTNLES FTRTASGGAF VVSNVPNLPS ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000234701/1-914 ---------- ---------- ---------- ----IGELQ- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ----LGELQ- ---------- BACU004619/1-1677 STDVFPPSQI TDLEATLDED EISLTWTAPG DNFDVGKVQK YIIRISGSIL ENSTTRP00000000003/1-912 ---------- ---------- ---------- ----LGELQ- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ----LGELQ- ---------- 1551 1600 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 DLRDNFDNAL QVNTTDLLPN EANSKETFTF KPGNISEENA THIFIAIRSV ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000234701/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010730/1-909 ---------- ---------- ---------- ---------- ---------- BACU004619/1-1677 DQSNLTSQVS NIAQAALFVP QAEDIPDEIP PDKNPPTSGL SISTLVLLVV ENSTTRP00000000003/1-912 ---------- ---------- ---------- ---------- ---------- bmy_16488T0/1-668 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSP00000234701/1-914 ---------L SIA------- ---------- ENSBTAP00000010730/1-909 ---------I SLG------- ---------- BACU004619/1-1677 GTVIIVSVIL SITIYVLSKK RNSSRPRTGF ENSTTRP00000000003/1-912 ---------L SVAL------ ---------- bmy_16488T0/1-668 ---------L SVALG----- ----------