KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:42:04 2014  Check: 00 ..

 Name: ENSP00000462349/1-220     Len:    226  Check:  6138  Weight:  1.00
 Name: ENSTTRP00000013893/1-219  Len:    226  Check:  7938  Weight:  1.00
 Name: bmy_21697T0/1-113         Len:    226  Check:  3587  Weight:  1.00
 Name: ENSBTAP00000010736/1-226  Len:    226  Check:  428  Weight:  1.00

//


                          1                                                   50
ENSP00000462349/1-220     MDFKAIAQQT AQEVLGYNRD TSGWKVVKTS KKITVSSKAS RKFHGNLYRV 
ENSTTRP00000013893/1-219  MDYKALAQQT AQEILGYYQD TSGWKVVKTS KKLTVSSKAS KKFHGNLYRV 
bmy_21697T0/1-113         ---------- ---------- ---------- ---------- -------YHV 
ENSBTAP00000010736/1-226  MDYKALAQQT AQEILGYYQD TSGWKVVKNS KKITVSSKAS KKFHGNLYRV 


                          51                                                 100
ENSP00000462349/1-220     EGIIPESPAK LSDFLYQTGD RITWDKSLQV YNMVHRIDSD TFICHTITQS 
ENSTTRP00000013893/1-219  EGIIPESTSK LSDFLYKPEN RVTWDKSLKM YSMVQKIDSD TFICHTITQS 
bmy_21697T0/1-113         EGIIPESTSK LSDFLYKPEN RVTWDKSLKV YNMVQKIDSD TFICHTITQS 
ENSBTAP00000010736/1-226  EAMIPESTSK LSDFLFKPEN RVTWDKSLKM YNMVLKIDLD TFLCHTITES 


                          101                                                150
ENSP00000462349/1-220     FAVGSISPRD FIDLVYIKRY EGNMNIISSK SVDFPEYPPS SNYIRGYNHP 
ENSTTRP00000013893/1-219  FAMGSISPRX XXXXXXXXXX XXXXXXXXXT SVD-PAYPPS SNYIRGYNHA 
bmy_21697T0/1-113         FAMGSISARD FIDLVYLKHY EGNMDIISPT SVDFPAYPPS SNYIRGCNHA 
ENSBTAP00000010736/1-226  FAMGSISPRD FINLVSVKHY EGNMDVISST SVDFPAYPPS SSYIRGYNHA 


                          151                                                200
ENSP00000462349/1-220     CGFVCSPMEE NPAYSKLVMF VQTEMRGKLS PSIIEKTMPS NLVNFILNAK 
ENSTTRP00000013893/1-219  CGYMCSPLQE NPAYSKLVMF VQTEMRGKLA PSIIEATMPS NLVSFLLNVK 
bmy_21697T0/1-113         CGYICSPLQE ---------- ---------- ---------- ---------- 
ENSBTAP00000010736/1-226  CGYICLPVQE NPAYSKLVMF VQTEMRGKLA PSIIETTMPS NLVSFMINVK 


                          201                                                250
ENSP00000462349/1-220     DGIKAHRTPS RRGFHHNSHS ------ 
ENSTTRP00000013893/1-219  DGVK-HKIPS GRGCHHDGHS S----- 
bmy_21697T0/1-113         ---------- ---------- ------ 
ENSBTAP00000010736/1-226  DGIKTQKIPS RRGYHHNGHS SFLKKK