KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:04 2014 Check: 00 .. Name: ENSP00000300091/1-372 Len: 554 Check: 1263 Weight: 1.00 Name: ENSBTAP00000010737/1-529 Len: 554 Check: 3455 Weight: 1.00 Name: bmy_21698T0/1-391 Len: 554 Check: 9531 Weight: 1.00 Name: ENSTTRP00000013898/1-531 Len: 554 Check: 407 Weight: 1.00 // 1 50 ENSP00000300091/1-372 MAKSKTKHRL CSQESSVSAL LASCTLSGSN SSNSDGSFHY KDKLYRSASQ ENSBTAP00000010737/1-529 MAKSDTKHRV CSRQSSVSSL LS-CNLSGSN SSNS-GSFQY KDKLYSSASQ bmy_21698T0/1-391 MAKLNTKRRV CSRESSVSSL LANCNLSGSN SSNSDGFFQY KDRLYSSASQ ENSTTRP00000013898/1-531 MAKLNTKRRV CSWESSVSSL LASCNLSGSN SSNSDGSFQY KDRLYSSASQ 51 100 ENSP00000300091/1-372 ALQAYIDDFD LGQIYPGAST GKINIDEDFT NMSQFCNYIY KPNNAFENLD ENSBTAP00000010737/1-529 ALQAYIDDFD LSQMCLGAST GKINIDKCSA NMPEFSNYIC KPNNAFENLD bmy_21698T0/1-391 ALQAYIDDFD LSQMYLGAST GKINIDKCSA NMPEFSNYVX KPNNAFENLD ENSTTRP00000013898/1-531 ALQAYIDDFD LSCVYLGAST GKINIDKCSA NMPEFSNYVY KPKNAFENLD 101 150 ENSP00000300091/1-372 HKKHSNFISC RRHTVNDIDS MSLTTDDLLR LPADGSFSYT YVGPSHRTSK ENSBTAP00000010737/1-529 DKRHLS-LSY RGQTLNDIDS ISLTTDDLLK LPADGSFSFT YFGSGHGSSK bmy_21698T0/1-391 DKKDLS-LSC RGQTINDMDS VSLTTDDLLK LPADGSFSFT YVGAGHGISK ENSTTRP00000013898/1-531 DKKDLS-LSC RGQTINDMDS ISLTTDDLLK LPADGSFSFT YVGAGHGISK 151 200 ENSP00000300091/1-372 KNKKCRGRLG SLDIEKNPHF QGPYTSMGKD NFVTPVIRSN INGKQC---- ENSBTAP00000010737/1-529 KNRKHIGRLS SSDREKKQNF QEPAALQGKD NLVTPLVYTN IKGRQCGRLK bmy_21698T0/1-391 KSKKRTGRLS SSNSEKNQNF QEPAALLGKD NLVTPVVYTN VKGKQC---- ENSTTRP00000013898/1-531 KSKKHIGRLS SSNSEKNQNF QEPATLLGKD NLVTPVVYTN VKGKQCGRLK 201 250 ENSP00000300091/1-372 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010737/1-529 NPKLMNKANK SVSVPSLSFS KKLSFRDSSE HNLEKNYPRW LTSQKSDLNI bmy_21698T0/1-391 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013898/1-531 NPKLVNKVNK CVSVPSLSFN KKSSFRDSSE HKLEKNYPRW LTSQKSDLNV 251 300 ENSP00000300091/1-372 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010737/1-529 SGITSIPDFK YPVWLYNQDL LPDTDSQRIH QMSKEDQCSP RHSYQAQRTS bmy_21698T0/1-391 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013898/1-531 SGITSIPDFK YPVWLYNQDL LPDTNSQRIY QIFKEDHCSP RHSY-AQRTS 301 350 ENSP00000300091/1-372 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010737/1-529 RLMNKLDCFE YSFEPSCISH SLSEDKGLLN EYKCGPEPSR CLCENLLLPG bmy_21698T0/1-391 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013898/1-531 QLMNKLDCFE YSFEPSNSSH SLSDDKGLVN EYECDSEHSQ CQCDNPLLPG 351 400 ENSP00000300091/1-372 ------GDKI ELLILKAKRN LEQCTEELPK SMKKDDSPCS LDKLEADRSW ENSBTAP00000010737/1-529 SKKPFSGDKI ELLILKAKRN LEHCTEELPK TMKKDDSPCS LDKLEAERSW bmy_21698T0/1-391 ------GDRI ELLILKAKRN LEHCTEELPK SMKKDDSPCS LDKLEAERSW ENSTTRP00000013898/1-531 SKKPFSGDRI ELLILKAKRN LEHCTEELPK SMKKDDSPCS LDKLEAERSW 401 450 ENSP00000300091/1-372 ENIPVTFKSP VPVNSDDSPQ QTSRAKSAKG VLEDFLNNDN QSCTLSGGKH ENSBTAP00000010737/1-529 ENIPVTFKSP VPVNTDDSPQ EIPKTKYANE FLEDFLNDDN QSCTLSGGKH bmy_21698T0/1-391 ENIPVTFKSP VPVNSDDSLQ QTSRAKYADR FLEDFLNNDN QSCTLSGGKH ENSTTRP00000013898/1-531 ENIPVTFKSP VPVNSDDSVQ QTSRAKYADG FLEDFLNNDN QSCTLSGGKH 451 500 ENSP00000300091/1-372 HGPVEALKQM LFNLQAVQER FNQNKTTDPK EEIKQVSEDD FSKLQLKESM ENSBTAP00000010737/1-529 HGPVEALKQM LFNLQAVQES FNQNKTAEPK GEIKQISEDD LSKVQLKESM bmy_21698T0/1-391 HGPVEALKQM LFNLQAVQES FNQNKTTEPK GEIKQVSEDD FSKLQLKESM ENSTTRP00000013898/1-531 HGPVEALKQM LFNLQAVQES FNQNKTTEPK GEIKQVSEDD FSKLQLKESM 501 550 ENSP00000300091/1-372 IPITRSLQKA L-----HHLS RLRDLVDDTN GERSPKM--- ---------- ENSBTAP00000010737/1-529 APITRSLQKA L-----HHLS RLRDLVDDTS GKQSPKI--- ---------- bmy_21698T0/1-391 APINRSLQKR FKQEKNHSFI LLCMAVE--G GERSVRVGEM MTKYGYHEEL ENSTTRP00000013898/1-531 APVNRSLQKA L-----HHLS RLRDLVDDSS GKQSPKIR-- ---------- 551 600 ENSP00000300091/1-372 ---- ENSBTAP00000010737/1-529 ---- bmy_21698T0/1-391 DGNV ENSTTRP00000013898/1-531 ----