KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:06 2014 Check: 00 .. Name: ENSP00000368349/1-1462 Len: 1629 Check: 7001 Weight: 1.00 Name: ENSBTAP00000010742/1-1351 Len: 1629 Check: 7394 Weight: 1.00 Name: ENSTTRP00000004988/1-1467 Len: 1629 Check: 1287 Weight: 1.00 Name: bmy_09312T0/1-909 Len: 1629 Check: 2630 Weight: 1.00 Name: BACU009134/1-1081 Len: 1629 Check: 1704 Weight: 1.00 // 1 50 ENSP00000368349/1-1462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010742/1-1351 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004988/1-1467 ---------- ---------- ---------- ---------- ---------- bmy_09312T0/1-909 MHLRASRTYL SLGSYFHRHD AALEGLGHFL REVPEGKQTQ GAFLVIWTSN BACU009134/1-1081 MHLRG----- ---------- ---------- ---------- ---------- 51 100 ENSP00000368349/1-1462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010742/1-1351 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004988/1-1467 ---------- ---------- ---------- ---------- ---------- bmy_09312T0/1-909 FDPVNFFSYY SLENVDGLVF PHLDSYPSWI IPSKRLGLDI RGVITGRQTR BACU009134/1-1081 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000368349/1-1462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010742/1-1351 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004988/1-1467 ---------- ---------- ---------- ---------- ---------- bmy_09312T0/1-909 ARGKAGGGAP RGAARHVSGL PGGSPQPLEL LIGFLGGACV GLRASFGLVG BACU009134/1-1081 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000368349/1-1462 --------MA PVHGDD---- --SLSDSGSF VSSRARREKK SKKGRQEALE ENSBTAP00000010742/1-1351 --------MA PLHGEDCEPA ANAVSDSRSL VASRSRREKK SKKGRQQALE ENSTTRP00000004988/1-1467 --------MA LAYGDDCELG ASAVSDSGSF VTSRSRREKK SKKGRQEALE bmy_09312T0/1-909 AESEDSGTMA PVHGDDCELG ASAVSDSGSF VGSRSRREKK SKKGRQEALE BACU009134/1-1081 --------IG ILSGSGVTVV --AVSDSGSF VGSRSRREKK SKKGRQEALE 201 250 ENSP00000368349/1-1462 RLKKAKAGEK YKYEVEDFTG VYEEVDEEQY SKLVQARQDD DWIVDDDGIG ENSBTAP00000010742/1-1351 RLKRAKAGEK YKYEVEDFTS VYEEVDEEQY SKLVQARQDD DWIVDDDGIG ENSTTRP00000004988/1-1467 RLKRAKAGEK YKYEVEDFTS VYEEVDEEQY SKLVQARQDD DWIVDDDGIG bmy_09312T0/1-909 RLKRAKAGEK YKYEVEDFTS VYEEVDEEQY SKLVQARQDD DWIVDDDGIG BACU009134/1-1081 RLKRAKAGEK YKYEVEDFTS VYEEVDEEQY SKLVQARQDD DWIVDDDGIG 251 300 ENSP00000368349/1-1462 YVEDGREIFD DDLEDDALDA DEKGKDGKAR NKDKRNVKKL AVTKPNNIKS ENSBTAP00000010742/1-1351 YVEDGREIFD DDLEDDALDS HEKGKDNKAC NKDKRTVKRA AVTKPNNIKS ENSTTRP00000004988/1-1467 YVEDGREIFD DDLEDHALDS HEKGKNNKAC SKDKRNVKKA MVTKPNNIKS bmy_09312T0/1-909 YVEDGREIFD DDLEDHALDS HEKGKNDKAC NKDKRNVKKA VVTKPNNIKS BACU009134/1-1081 YVEDGREIFD DDLEDHVLAS HEKGKNDKAC NKDKRNVKKA VVTKPNNIKS 301 350 ENSP00000368349/1-1462 MFIACAGKKT ADKAVDLSKD GLLGDILQDL NTETPQITPP PVMILKKKRS ENSBTAP00000010742/1-1351 MFIASAGRKT VDKAVDLSKD DLLGDILQDL NTETPQITPP PVIIPKKKRS ENSTTRP00000004988/1-1467 MFIASAGRKT ADKAVDLSKD DLLGDILQDL NTETPQITPP PVIIPKKKGS bmy_09312T0/1-909 MFIASAGRKT ADKAVDLSKD DLLGDILQDL NTETPQITPP PVIIPKKKGS BACU009134/1-1081 MFIASAGRKT AD-------- ---------- ---TPQITPP PVIIPKKKGS 351 400 ENSP00000368349/1-1462 IGASPNPFSV HTATAVPSGK IASPVSRKEP PLTPVPLKRA EFAGDDVQVE ENSBTAP00000010742/1-1351 SGASLNPFSV HTPKAAPSGK TTPPASRREP SLTPAPLTCA EFAGEPGPPL ENSTTRP00000004988/1-1467 SGASLNPFSM HTPKXXXXXX XXXXXSRKEH SLR-APLKCA GFAGEPVLAL bmy_09312T0/1-909 SGASMNPFSV HTPKAAPSGK TASPVSRKEP SLTPAPLKCA GFAGEPVPAL BACU009134/1-1081 SGASLNPFSV HTPKAAPSGK TASPVSRKEP SLTPAPLKCA GFAGEPVPAL 401 450 ENSP00000368349/1-1462 STEEEQESGA MEFEDGDFDE PMEVEEVDLE PMAAKAWDKE SEPAEEVKQE ENSBTAP00000010742/1-1351 CTDDKEESGA MEFEDGDFDE PMEAEEVDVE PVAAKTLCQE REPAEEAKHK ENSTTRP00000004988/1-1467 RTVDQEESGA MDFEDGDFDE PMETEEVDVE PVGAKTSDQE REPAEGTKHE bmy_09312T0/1-909 CTVDKEESGA MDFEDGDFDE PMETEEVDAE PVGAKTSDQE REPAEGTKHE BACU009134/1-1081 CTVDKEESGA MDFEDGDFDE PMETEEVDVE PVGAKTSDQE REPAEGTKHE 451 500 ENSP00000368349/1-1462 ADSGKGTVSY LGSFLPDVSC WDIDQEGDSS FSVQEVQVDS SHLPLVKGAD ENSBTAP00000010742/1-1351 ADSGKGTTSS SASFLPDVSC WDMDQEDDSS FSALEVQVDS SHLPLVKGAD ENSTTRP00000004988/1-1467 ADPGKGTISY SASFLPDVSC WDIDQEDDSS FSALEVQVDS SHLPLVKGAD bmy_09312T0/1-909 ADPGKGTIPY SASFLPDVSC WDIDQEDDSS FSALEVQVDS SHLPLVKGAD BACU009134/1-1081 ADPGKGTIPY SASFLPDVSC WDIDQEDDSS FSALEVQVDS SHLPLVKGAD 501 550 ENSP00000368349/1-1462 EEQVFHFYWL DAYEDQYNQP GVVFLFGKVW IESAETHVSC CVMVKNIERT ENSBTAP00000010742/1-1351 EEQVFQFYWL DAYEDPYSQP GVVFLFGKVW IESAETHVSC CVMVKNIERS ENSTTRP00000004988/1-1467 EEQVFQFYWL DAYEDPYSQP GVVFLFGKVW IEFAQTHVSC CVMVKNIERT bmy_09312T0/1-909 EEQVFQFYWL DAYEDPYSQP GVVFLFGKVW IEFAQTHVSC CVMVKNIERT BACU009134/1-1081 EEQVFQFYWL DAYEDPYSQP GVVFLFGKVW IEFAQTHVSC CVMVKNIERT 551 600 ENSP00000368349/1-1462 LYFLPREM-K IDLNTGKETG TPISMKDVYE EFDEKIATKY KIMKFKSKPV ENSBTAP00000010742/1-1351 LCFLPREM-K VDLNTGKESG TPVTMKDVYD EFDEKIAAKY KIMKFKSKVV ENSTTRP00000004988/1-1467 LYFLPRET-K IDLNTGKESG TPVTMKDVYD EFDEKIAAKY KIMKFKSKAV bmy_09312T0/1-909 LYFLPRETQK IDLNTGKESG TPVTMKDVYD EFDEKIAAKY KIMKFKSKAV BACU009134/1-1081 LYFLPRETQK IDQNTGKESG TPVTMKDVYD EFDEKIAAKY KIMKFKSKAV 601 650 ENSP00000368349/1-1462 EKNYAFEIPD VPEKSEYLEV KYSAEMPQLP QDLKGETFSH VFGTNTSSLE ENSBTAP00000010742/1-1351 EKNYAFEIPD VPEKSEYLEV RYSAEMPQLP QDLKGETFSH VFGTNTSSLE ENSTTRP00000004988/1-1467 EKNYAFEIPD VPEKSEYLEV RYSAEMPQLP QDLKGETFSQ VFGTNTSSLE bmy_09312T0/1-909 EKSYAFEIPD VPEKSEYLEV RYSAEMPQLP QDLKGETFSH VFGTNTSSLE BACU009134/1-1081 EKSYAFEIPD VPEKSEYLEV RYSAEMPQLP QDLKGETFSH VFGTNTSSLE 651 700 ENSP00000368349/1-1462 LFLMNRKIKG PCWLEVKSPQ LLNQPVSWCK VEAMALKPDL VNVIKDVSPP ENSBTAP00000010742/1-1351 LFLMNRKIKG PCWLEVKNPQ LLNQPISWCK VEAMVLKPDL VNVIKDVGPP ENSTTRP00000004988/1-1467 LFLMNRKIKG PCWLEVKNPQ LLNQPISWCK VEAVALKPDL VNVIKDVGPP bmy_09312T0/1-909 LFLMNRKIKG PCWLEVKNPQ LLNQPISWCK VEAMALKPGL VNVIKDVGPP BACU009134/1-1081 LFLMNRKIKG PCWLEVKNPQ LLNQPISWCK VEAVALKPHL VNVIKDVGPP 701 750 ENSP00000368349/1-1462 PLVVMAFSMK TMQNAKNHQN EIIAMAALVH HSFALDKAAP KPPFQSHFCV ENSBTAP00000010742/1-1351 PVVVMSLSMK TMQNAKTHEN EIIAVSALVH HSFALDKAPP QPPFQSHFCV ENSTTRP00000004988/1-1467 PLVVMSLSMK TMQNAKTHEN EIIAVAALVH HSFALDKAPP RPPFHSHFCV bmy_09312T0/1-909 PLVVMSLSMK TMQNAKTHEN EIIAVAALVH HSFALDKAPP RPPFHSHFCV BACU009134/1-1081 PLVVMSLSMK TMQNAKTHEN EIIAVAALVH HSFALDKAPP RPPFHSHFCV 751 800 ENSP00000368349/1-1462 VSKPKDCIFP YAFKEVIEKK NVKVEVAATE RTLLGFFLAK VHKIDPDIIV ENSBTAP00000010742/1-1351 VSKPKDCIFP YDFKESIKEK NVKVEVAATE RTLLGFFLAK VHKIDPDIIV ENSTTRP00000004988/1-1467 VSKPKDCIFP YDFKEGIKEK NVKVEVAATE RTLLGFFLAK IHKIDPDIIV bmy_09312T0/1-909 VSKPKDCIFP YDFKEGIKEK NVKVEVAATE RTLLGFFLAK IHKIDPDIIV BACU009134/1-1081 VSKPKDCIFP YDFKEGIKEK NVKVEVAATE RTLLGFFLAK IHKIDPDIIV 801 850 ENSP00000368349/1-1462 GHNIYGFELE VLLQRINVCK APHWSKIGRL KRSNMPKLGG RSGFGERNAT ENSBTAP00000010742/1-1351 GHNIYGFELE VLLQRINVCK VPFWSKIGRL KRSNMPKLGG RSGFGEKNAT ENSTTRP00000004988/1-1467 GHNIYGFELE VLLQRINVCK VPYWSKIGRL KRSNMPKLGG RSGFGERNAT bmy_09312T0/1-909 GHNIYGFELE VLLQRINVCK VPYWSKIGRL KRSNMPKLGG RSGFGERNAT BACU009134/1-1081 GHNIYGFELE VLLQRINVCK VPYWSKIGRL KRSNMPKLGG RSGFGERNAT 851 900 ENSP00000368349/1-1462 CGRMICDVEI SAKELIRCKS YHLSELVQQI LKTERVVIPM ENIQNMYSES ENSBTAP00000010742/1-1351 CGRMICDVEI SAKELIRCKS YHLSELVQQI LKTERIVIPI ETIRNMYSDS ENSTTRP00000004988/1-1467 CGRMICDVEI SAKELIRCKS YHLSELVQQI LKTERVVIPM ENVRNMYSDS bmy_09312T0/1-909 CGRMICDVEI SAKELIRCKS YHLSELVQQI LKTERVVIPM ENVRNMY--- BACU009134/1-1081 CGRMICDVEI SENELIRCKS YHLSELVQQI LKTERVVIPM ENVRNMYSNS 901 950 ENSP00000368349/1-1462 SQLLYLLEHT WKDAKFILQI MCELNVLPLA LQITNIAGNI MSRTLMGGRS ENSBTAP00000010742/1-1351 SHLLYLLEHT WKDARFILQI MCELNVLPLA LQITNIAGNI MSRTLMGGRS ENSTTRP00000004988/1-1467 SRLLYLLEHT WKDARFILQI MCELNVLPLA LQITNIAGNI MSRTLMGGRS bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 SHLLYLLEHT WKDARFILQI MCELNVLPLA LQITNIAGNI MSRTLMGGRS 951 1000 ENSP00000368349/1-1462 ERNEFLLLHA FYENNYIVPD KQIFRKPQQK LGDEDEEIDG DTNKYKKGRK ENSBTAP00000010742/1-1351 ERNEFLLLHA FYENNYIVPD KQTFRKPQQK LGDEDEDIDG DTNKYKKGRK ENSTTRP00000004988/1-1467 ERNEFLLLHA FYENNYIVPD KQIFRKPQQK PGDEDEDIDG DTNKYKKGRK bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---RY----- BACU009134/1-1081 ERNEFLLLHA FYENNYIVPD KQIFRKPQQK PGDEDEDIDG DTSKYKKGRK 1001 1050 ENSP00000368349/1-1462 KAAYAGGLVL DPKVGFYDKF ILLLDFNSLY PSIIQEFNIC FTTVQRVASE ENSBTAP00000010742/1-1351 KAAYSGGLVL DPKVGFYDKF ILLLDFNSLY PSIIQEFNIC FTTVQRVASE ENSTTRP00000004988/1-1467 KAAYSGGLVL DPKVGFYDKF ILLLDFNSLY PSIIQEFNIC FTTVQRVASE bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 KAAYSGGLVL DPKVGFYDKF ILLLDFNSLQ ES---SFSRC ---------- 1051 1100 ENSP00000368349/1-1462 AQKVTEDGEQ EQIPELPDPS LEMGILPREI RKLVERRKQV --KQLMKQQD ENSBTAP00000010742/1-1351 AQKVVEDGEQ EQIPELPDPS LEMGILPREI RKLVERRRET IQKHLMPQIC ENSTTRP00000004988/1-1467 AQKVTEDGEQ EQIPELPDPS LEMGILPREI RKLVERRRQV --KQLMKQQD bmy_09312T0/1-909 ---------- -------DPA ---------- ---------- ---------- BACU009134/1-1081 ---DHGDGEQ EQIPELPDPS LEMGILPREI RKLVERRRQV --KQLMKQQD 1101 1150 ENSP00000368349/1-1462 LNPDLILQYD IRQKALKLTA NSMYGCLGFS YSRFYAKPLA ALVTYKGREI ENSBTAP00000010742/1-1351 LLSLCGLQYD IRQKALKLTA NSMYGCLGFS YSRFYAKPLA ALVTYKGREI ENSTTRP00000004988/1-1467 LNPDLVLQYD IRQKALKLTA NSMYGCLGFS YSRFYAKPLA ALVTYKGREI bmy_09312T0/1-909 ---------- ---------- -----CFRIC LS-------- ---------- BACU009134/1-1081 LNPDLALQYD IRQKALKLTA NSMYGCLGFS YSRFYAKPLA ALVTYKGREF 1151 1200 ENSP00000368349/1-1462 LMHTKEMVQK MNLEVIYGDT DSIMINTNST NLEEVFKLGN KVKSEVNKLY ENSBTAP00000010742/1-1351 LMHTKEMVQK MNLEVIYGDT DSIMINTNST NLEEVFKLGN KVKSEVNKLY ENSTTRP00000004988/1-1467 LMHTKEMVQK MNLEVIYGDT DSIMINTNST NLEEVFKLGN KVKSEVNKLY bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 LSPVARQPGS ---------- ---------- ---------- ---------- 1201 1250 ENSP00000368349/1-1462 KLLEIDIDGV FKSLLLLKKK KYAALVVEPT SDGNYVTKQE LKGLDIVRRD ENSBTAP00000010742/1-1351 KLLEIDIDGI FKSLLLLKKK KYAALIVEPT SDGNYVTKQE VKGLDIVRRD ENSTTRP00000004988/1-1467 KLLEIDIDGI FKSLLLLKKK KYAALVVEPT VDGNYVTKQE VKGLDIVRRD bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 ---------- -GPFLSLMRR SYSLAWCSRL PP----PQQQ CLGDEYLKR- 1251 1300 ENSP00000368349/1-1462 WCDLAKDTGN FVIGQILSDQ SRDTIVENIQ KRLIEIGENV LNGSVPVSQF ENSBTAP00000010742/1-1351 WCDLAKDTGN FVIGQILSDQ NRDTIVENIQ KRLIEIGENV LNGSVPVSQF ENSTTRP00000004988/1-1467 WCDLAKDTGN FVIGQILSDQ SRDTIVENIQ KRLIEIGENV LNGSVPVSQF bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 ---------- ---GHFLNKH TRKS------ ---------- -KGNCCPQSI 1301 1350 ENSP00000368349/1-1462 EINKALTKDP QDYPDKKSLP HVHVALWINS QGGRKVKAGD TVSYVICQDG ENSBTAP00000010742/1-1351 EINKALTKDP QDYPDKKSLP HVHVALWINS QGGRKVKAGD TVSYVICQDG ENSTTRP00000004988/1-1467 EINKALTKDP QDYPDKKSLP HVHVALWINS QGGRKVKAGD TVSYVICQDG bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 ELKK------ ---------- -----LSLLS PPSRQRIMKN SPMTILSHTD 1351 1400 ENSP00000368349/1-1462 SNLTASQRAY APEQLQKQDN LTIDTQYYLA QQIHPVVARI CEPIDGIDAV ENSBTAP00000010742/1-1351 SNLTAGQRAY APEQLQKQDN LSIDTQYYLA QQIHPVVARI CEPIDGIDAI ENSTTRP00000004988/1-1467 SNLTGCQRAY APEQLQKQDN LSIDTQYYLA QQIHPVVARI CEPIDGIDAV bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 LELSGNQQC- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000368349/1-1462 LIATWLGLDP TQFRVHHYHK DEENDALLGG PAQLTDEEKY RDCERFKCPC ENSBTAP00000010742/1-1351 LIASWLGLDP TQFRVHHYHK DEENDALLGG PAHLTDEEKY KDCERFKCPC ENSTTRP00000004988/1-1467 LIATWLGLDA TQFRVHHYHR DEENDALLGG PAQLTDEEKY RDCERFKCPC bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 ---------- -------FHQ NDDSRAL--- ---------- ---------- 1451 1500 ENSP00000368349/1-1462 PTCGTENIYD NVFDGSGTDM EPSLYRCSNI DCKASPLTFT VQLSNKLIMD ENSBTAP00000010742/1-1351 PTCGTENIYD SVLDGSGTDM EPSLYRCSNI NCKASPLTFM VQLSNKLIMD ENSTTRP00000004988/1-1467 PICGTENIYD SVFDGSGTDM EPSLYRCSNI ECKASPLTFM VQLSNKLIMD bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 ---------- ---------- ---------- ---------- VTLQLEVVLR 1501 1550 ENSP00000368349/1-1462 IRRFIKKYYD GWLICEEPTC RNRTRHLPLQ FSRTGPLCPA CMKATLQPEY ENSBTAP00000010742/1-1351 IRRCIKKYYE ---------- ---------- ---------- ---------- ENSTTRP00000004988/1-1467 IRRCIKKYYE GWLICEEPTC RNRTRHLPLQ FSRNGPLCQV CMKATLRPEY bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 TTS------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000368349/1-1462 SDKSLYTQLC FYRYIFDAEC ALEKLTTDHE KDKLKKQFFT PKVLQDYRKL ENSBTAP00000010742/1-1351 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004988/1-1467 SDKSLYTQLC FYRYIFDADC ALEKLITDHE KDKLKKQFFT PKVLQDYRKL bmy_09312T0/1-909 ---------- ---------- ---------- ---------- ---------- BACU009134/1-1081 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000368349/1-1462 KNTAEQFLSR SGYSEVNLSK LFAGCAVKS ENSBTAP00000010742/1-1351 ---------- ---------- --------- ENSTTRP00000004988/1-1467 KNTAEQFLSQ SGYSEVNLSK LFADCAVRS bmy_09312T0/1-909 ---------- ---------- --------- BACU009134/1-1081 ---------- ---------- ---------