KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:09 2014 Check: 00 .. Name: ENSP00000341938/1-358 Len: 399 Check: 6176 Weight: 1.00 Name: ENSTTRP00000014383/1-331 Len: 399 Check: 8235 Weight: 1.00 Name: bmy_00703T0/1-299 Len: 399 Check: 1829 Weight: 1.00 Name: ENSBTAP00000010773/1-301 Len: 399 Check: 2749 Weight: 1.00 // 1 50 ENSP00000341938/1-358 MRAHAQRGRG CTRRSAAVLM ARHGLPLLPL LSLLVGAWLK LGNGQATSMV ENSTTRP00000014383/1-331 ---------- -------GSC SGYGSPLLTL LSLLSGPWLE LGNGQMTNMV bmy_00703T0/1-299 ---------- ---------M ATSLSPLLTL LSLLSGPWLE LA-------- ENSBTAP00000010773/1-301 ---------- ---------M GISLSPLLTV LSLLSGRWLE LGNGQTVNMV 51 100 ENSP00000341938/1-358 QLQGGRFLMG TNSPDSRDGD GPVREATVKP FAIDIFPVTN KDFRDFVREK ENSTTRP00000014383/1-331 QLPGGRFQMG TNSPDGRDGE GPVREVMVKP FAIDIFPVTN KDFREFVREK bmy_00703T0/1-299 ---------- ---------- --------KP YETSL----- --FREFVREK ENSBTAP00000010773/1-301 QLPGGRFQMG TDSPDGRDGE GPVREVTVKP FAIDIFPVTN KDFREFVREK 101 150 ENSP00000341938/1-358 KYRTEAEMFG WSFVFEDFVS DELRNKATQP MKSVLWWLPV EKAFWR---- ENSTTRP00000014383/1-331 KYQTEAEVFG WSFVFEDLVS DELRNKATQK MQSLLWWLPV ERAFWR---- bmy_00703T0/1-299 KYQTEAEVFG WSFVFEDLVS DELRNKATQK MQPLLWWLPV ERAFWRQALS ENSBTAP00000010773/1-301 KYRTEAEVFG WSFVFEDLVS DELRNKATQR MQSLLWWLPV ERAFWR---- 151 200 ENSP00000341938/1-358 ---------- ---------- ---------- -------QPA GPGSGIRERL ENSTTRP00000014383/1-331 ---------- ---------- ---------- -------QPA GPGSGIREKL bmy_00703T0/1-299 SHFLAPSVVK AELRHPKPSL PQTSTSSQKL VSLHPGYQPA GPGSGIREKL ENSBTAP00000010773/1-301 ---------- ---------- ---------- -------QPA GPGSGIREKL 201 250 ENSP00000341938/1-358 EHPVLHVSWN DARAYCAWRG KRLPTEEEWE FAARGGLKGQ VYPWGNWFQP ENSTTRP00000014383/1-331 ELPVVHVSWN DARAYCAWRG KRLPIEEEWE FAARGGLKGQ VYPWGNEFQP bmy_00703T0/1-299 ELPVVHVSWN DARAYCAWRG KRLPIEEEWE FAARGGLKGQ VYPWGNEFQP ENSBTAP00000010773/1-301 EFPVVHVSWN DARAYCAWRG KRLPTEEEWE FAARGGLKGQ VYPWGNKFQP 251 300 ENSP00000341938/1-358 NRTNLWQGKF PKGDKAEDGF HGVSPVNAFP AQNNYGWATL QIQPQTTSVS ENSTTRP00000014383/1-331 NRTNLWQGKF PKGDKAEDGF HGVSPVNAFP PQNNYEWAIL QIQPQTT-AS bmy_00703T0/1-299 NRTNLWQGKF PKGDKAEDGF HGVSPVNAFP PQNNYGLSDL --------VG ENSBTAP00000010773/1-301 NRTNLWQGKF PKGDKAEDGF HGVSPVNAFP PQNDYGLYDL --------VG 301 350 ENSP00000341938/1-358 AVLQTQAGRQ GSCKQPGGDK EKSLLGSLSF PGHVANSAIP SSRASASGKN ENSTTRP00000014383/1-331 AVLPVQADHL GSCEQPHRDE ESPPWHP-SL PGHMPNT--- NSGASIPSPL bmy_00703T0/1-299 NVWEWTASPY QPADQDMRVL RGASWID-TA DGSA------ NHRARVTTRM ENSBTAP00000010773/1-301 NVWEWTASQY QAADQDMRVL RGASWID-TA DGSA------ NHRARVTTRM 351 400 ENSP00000341938/1-358 FPFPVSHPSV AGASHQGRRG LSLLCFGEGA QCVLTMAGGQ VFLLEAKYY ENSTTRP00000014383/1-331 PVADTSPPGR KGPCLHGGAP LS-----PGE GAHLIVSRSR TFLLEVKYP bmy_00703T0/1-299 GNTPDSASDN LGFRCASSVG RP-----PGE L--------- --------- ENSBTAP00000010773/1-301 GNTPDSASDN LGFRCASGAG RP-----PGE L--------- ---------