KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:10 2014 Check: 00 .. Name: ENSP00000222139/1-508 Len: 540 Check: 8723 Weight: 1.00 Name: ENSBTAP00000010781/1-508 Len: 540 Check: 9667 Weight: 1.00 Name: ENSTTRP00000001674/1-509 Len: 540 Check: 2363 Weight: 1.00 Name: bmy_16828T0/1-528 Len: 540 Check: 9360 Weight: 1.00 Name: BACU002474/1-509 Len: 540 Check: 1923 Weight: 1.00 // 1 50 ENSP00000222139/1-508 MDHLGASLWP QVGSLCLLLA GAAWAPPPNL PDPKFESKAA LLAARGPEEL ENSBTAP00000010781/1-508 MYHLPAALRA GIGFLCLLLA GAAWAPPPNP TDPKFENKAA LLTAREPDEF ENSTTRP00000001674/1-509 MYHLGASLWP GVGFLCLLLA GATWAPPPNP PDPKFERKAA LLTAREPEEF bmy_16828T0/1-528 MYPLGAPLWP GVGFLCLLLA GATWAPPPNP PDPKFESKAA LLTAREPEEF BACU002474/1-509 MYPLGAPLWP GVGFLCLLLA GATWAPPPNP PDPKFESKAA LLTAREPEEF 51 100 ENSP00000222139/1-508 LCFTERLEDL VCFWEEAASA GVGPGNYSFS YQLEDEPWKL CRLHQAPTAR ENSBTAP00000010781/1-508 LCFTERLEDL VCFWEEAATA GVGPDNYSFS YQLEGEPWKP CRLHQAPTAR ENSTTRP00000001674/1-509 LCFTERLEDL VCFWEEAASA GVGPDNYSFS YQLEGEPWKP CRLHQAPTTR bmy_16828T0/1-528 LCFTERLEDL VCFWEEAASA GVGPDNYSFS YQLEGEPWKP CRLHQAPTTR BACU002474/1-509 LCFTERLEDL VCFWEEAASA GVGPDNYSFS YQLEGEPWKP CRLHQAPTTR 101 150 ENSP00000222139/1-508 GAVRFWCSLP TADTSSFVPL ELRVTAA-SG APRYHRVIHI NEVVLLDAPV ENSBTAP00000010781/1-508 GLVRFWCSLP TADTSSFVPL ELHVTAA-SG ASRYRRTIHV NEVVLLDPPA ENSTTRP00000001674/1-509 GLVRFWCSLP TADTSSFVPL ELRVIAASSG SSRYRRIIHI NEVVLLDPPA bmy_16828T0/1-528 GLVRFWCSLP TADTSSFVPL ELSVTAASSG ASRYRRIIHI NEVVLLDPPA BACU002474/1-509 GLVRFWCSLP TADTSSFVPL ELSVTAASSG ASRYRRIIHI NEVVLLDPPA 151 200 ENSP00000222139/1-508 GLVARLADES GHVVLRWLPP PETPMTSHIR YEVDVSAGNG AGSVQRVEIL ENSBTAP00000010781/1-508 RLVARRADEG GHVVLRWLPP PGAPMASLIR YEVNISAENA AGSAQRVEIL ENSTTRP00000001674/1-509 GLLARRADEG GHVVLRWLPP PGAPMASLIR YEMNISAENA AGGAQRVEIL bmy_16828T0/1-528 GLLARRADEG GHVVLRWLPP PGAPMASLIR YEVNISAENA AGGAQRVEIL BACU002474/1-509 GLLARRADEG GHVVLRWLPP PGAPMASLIR YEVNISAENA AGGAQRVEIL 201 250 ENSP00000222139/1-508 EGRTECVLSN LRGRTRYTFA VRARMAEPSF GGFWSAWSEP VSLLTPSDLD ENSBTAP00000010781/1-508 DGRTECLLSN LRGGTRYTFM VRARMAEPSF GGFWSAWSEP ASLLTASDLD ENSTTRP00000001674/1-509 DGRTECVLSN LRGGTRYTFK VRARMAEPSF GGFWSAWSEP VSLLTASDLD bmy_16828T0/1-528 DGRTECVLSN LRGGTRYTFR IRARMAEPSF GGFWSAWSEP VSLLTASDLD BACU002474/1-509 DGRTECVLSN LRGGTRYTFR IRARMAEPSF GGFWSAWSEP VSLLTASDLD 251 300 ENSP00000222139/1-508 PLILTLSLIL VVILVLLTVL ALLSHRRALK QKIWPGIPSP ESEFEGLFTT ENSBTAP00000010781/1-508 PLILTLSLVL VLILLLLAVL ALLSHRRTLK QKIWPGIPSP ESEFEGLFTT ENSTTRP00000001674/1-509 PLILTLSLVL VLILLLLAVL TLLSHRRTLK QKIWPGIPSP ESEFEGLFTT bmy_16828T0/1-528 PLILTLSLVL VLILL----- -------TLK QKIWPGIPSP ESEFEGLFTT BACU002474/1-509 PLILTLSLVL VLILLLLAVL TLLSHRRTLK QKIWPGIPSP ESEFEGLFTT 301 350 ENSP00000222139/1-508 HKGNF----- ---------- ---------- ------QLWL YQNDGCLWWS ENSBTAP00000010781/1-508 HKGNF----- ---------- ---------- ------QLWL YQTDGCLWWS ENSTTRP00000001674/1-509 HKGNF----- ---------- ---------- ------QLWL YQTDGCLWWS bmy_16828T0/1-528 HKGNFQVGGL VVPSGPGVSL LLWPNPWSLS RRLLFPQLWL YQTDGCLWWS BACU002474/1-509 HKGNF----- ---------- ---------- ------QLWL YQTDGCLWWT 351 400 ENSP00000222139/1-508 PCTPFTEDPP ASLEVLSERC WGTMQAVEPG TDDEGPLLEP VGSEHAQDTY ENSBTAP00000010781/1-508 PSTPLPEDPP APLEVLSECC WGVTQAVEPG ADDGGPLLEP VGSEHAQDSY ENSTTRP00000001674/1-509 PCTPFTEDPP APLEVLSERC WGVTQAVEPG ADDEGPLLEP VGSEHAQDSY bmy_16828T0/1-528 PCTPFTEDPP APLEVLSERC WGVTQAVEPG ADDEGPLLEP VGSEHAQDSY BACU002474/1-509 PCTPFTEDPP APLEVLSERF WGVTQAVEPG ADDEGPLLEP VGSEHAQDSY 401 450 ENSP00000222139/1-508 LVLDKWLLPR NPPSEDLPGP GGSVDIVAMD EGSEASSCSS ALASKPSPEG ENSBTAP00000010781/1-508 LVLDKWLLPR SPPSEDLLQP GGDMDIVTMD EASEASSCTS ALALKPGPEG ENSTTRP00000001674/1-509 LVLDKCLLPR SPPSEDLPQP GGDLDIAAMD EASEAFSCSS ALALKPVPEG bmy_16828T0/1-528 LVLDKCLLPR SPPSEDLPQP GGDLDTAAMD EASEASSCSS ALALKPGPEG BACU002474/1-509 LVLDKCLLPR SPPSEDLPQP GGDLDAAAMD EGSEASSCSS ALALKPGPEG 451 500 ENSP00000222139/1-508 ASAASFEYTI LDPSSQLLRP WTLCPELPPT PPHLKYLYLV VSDSGISTDY ENSBTAP00000010781/1-508 ASATSFEYTI LDPSSQLLRP RALPPELLPT PPHLKYLYLV VSDSGISTDY ENSTTRP00000001674/1-509 ASAASFEYTI LDPSSQLLRP RALPPELPPT PPHLKYLYLV VSDSGISTDY bmy_16828T0/1-528 ALAASFEYTI LDPSSQLLRP RALLPELPPT PPHLKYLYLV VSDSGISTDY BACU002474/1-509 ASAASFEYTI LDPSSQLLRP RALPPELPPT PPHLKYLYLV VSDSGISTDY 501 550 ENSP00000222139/1-508 SSGDSQGAQG GLSDGPYSNP YENSLIPAAE PLPPSYVACS ENSBTAP00000010781/1-508 SSGGSQEAQG GSSNGPYSNP YENSLIPAPK PSPPSYVACS ENSTTRP00000001674/1-509 SSGGSQEAQR GSSNGPYSNP YENSLIPAPE PSPPSYVACS bmy_16828T0/1-528 SSGGSQEAQR GSSNGPYSNP YENSLIPAPE PSPPSYVACS BACU002474/1-509 SSGGSQEAQR SSSNGPYSNP YENSLIPAPE PSPPSYVACS