KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:10 2014 Check: 00 .. Name: ENSP00000377075/1-716 Len: 719 Check: 5304 Weight: 1.00 Name: ENSBTAP00000010783/1-713 Len: 719 Check: 5079 Weight: 1.00 Name: ENSTTRP00000001679/1-707 Len: 719 Check: 7866 Weight: 1.00 Name: bmy_16827T0/1-613 Len: 719 Check: 3973 Weight: 1.00 Name: BACU002473/1-606 Len: 719 Check: 367 Weight: 1.00 // 1 50 ENSP00000377075/1-716 MERTA-GKEL ALAPLQDWGE ETEDGAVYSV SLRRQRSQRR SPAEGPGGSQ ENSBTAP00000010783/1-713 MERTAAGKEL ALAPLQDWGE ETEDGAVYSV SLRRQRSQRS SPGAGPRVTQ ENSTTRP00000001679/1-707 MERTT-SKEL ALAPLQDWGE ETEDGAVYSV SLRRQRSQRL SPGAGPRGTQ bmy_16827T0/1-613 MERTT-SKEL ALAPLQDWGE ETEDGAVYSV SLRRQRSQRL SPGAGPRGTQ BACU002473/1-606 MERTT-SKEL ALAPLQDWGE ETEDGAVYSV SLRRQRSQRL SPGAGPRGTQ 51 100 ENSP00000377075/1-716 APSPIANTFL HYRTSKVRVL RAARLERLVG ELVFGDREQD PSFMPAFLAT ENSBTAP00000010783/1-713 ALNPAPDTFL HYRTSKVRAL RAARLERLVR ELVSGDPEQD PGFVPAFLAT ENSTTRP00000001679/1-707 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXFVPAFWTT bmy_16827T0/1-613 APSPGADTFL HYRTSKVRAL RAARLERLLR ELVSGDREQD PGFVPAFLAT BACU002473/1-606 APSPGADTFL HYRTSKVRAL RAERLERLAR ELVSGDREQD PGFVPAFLAT 101 150 ENSP00000377075/1-716 YRTFVPTACL LGFLLPPMPP PPPPGVEIKK TAVQDLSFNK NLRAVVSVLG ENSBTAP00000010783/1-713 HRAFVPTGRV LGLLLPPPAP PLPPGVEIKK TEGRDLTFNK NLRAVVSVLG ENSTTRP00000001679/1-707 TGAFVPTARV LDFLLPPPPP PLPPGVEIKK TEGRDLTFNN NLRAVVSVLG bmy_16827T0/1-613 HRAFVPTARV LSLLLPPPPP PLPPG----- ---------- ---AVVSVLG BACU002473/1-606 HRAFVPTARL LGLLLPPPPP PLPPGVEIKK TEGRDLTFNK NLRAVVSVLG 151 200 ENSP00000377075/1-716 SWLQDHPQDF RDPPAHSDLG SVRTFLGWAA PGSAEAQKAE KLLEDFLEEA ENSBTAP00000010783/1-713 LWLRDHPQDF WDPPAHSDLG SVCNFLGWAA PSGAEAQEAE KLLGDFLKEA ENSTTRP00000001679/1-707 SWLRDYPQDF WDPPAHSDLG SVCTFLGWAA PSGAEAREAE KLLGDFLKNA bmy_16827T0/1-613 SWLRDYPQDF WDPPAHSDLG SVCTFLGWAA PSGAEAREAE KLLGDFLKDA BACU002473/1-606 SWLRDYPQDF WDPPAHSDLG SVCTFLGWAA PSGAEAREAE QLLGDFLKDA 201 250 ENSP00000377075/1-716 EREQ-EEEPP QVWTGPPRVA QTSDPDSSEA CAEEEEGLMP QGPQLLDFSV ENSBTAP00000010783/1-713 KTEQEEEEQC QTRAGPPGTA QILCPDSPMG CLEDEEGLVW EGPELLDFSV ENSTTRP00000001679/1-707 EPQQEEEERS QTWAGHPGVA QIPRPDSPVG CLEEVEGLVR EGPELLDFSV bmy_16827T0/1-613 EPQQEEEEQS QTWA------ ---------- ---EVEGLVR EGPELLDFSV BACU002473/1-606 EPQQEEEEQS QTWAGHPGVD QIPRPDSPVG CLEEVEGLVR EGPELLDFSV 251 300 ENSP00000377075/1-716 DEVAEQLTLI DLELFSKVRL YECLGSVWSQ RDRPGAAGAS PTVRATVAQF ENSBTAP00000010783/1-713 DDVAEQLTLM DVELFSRLRP FECLGSVWSQ RDRPGATSIA PTVRATVTQF ENSTTRP00000001679/1-707 DDVTEQLTLM DAELFSRVRP FECLGSVWSQ RDRPGATGTT STVRATVTQF bmy_16827T0/1-613 DDVAEQLTLM DAELFSRVRP FECLGSVWSQ RDRPGATGTA STVRATVTQF BACU002473/1-606 DDVAEQLTLM E--------- ---------- ---------- ---------- 301 350 ENSP00000377075/1-716 NTVTGCVLGS VLGAPGLAAP QRAQRLEKWI RIAQRCRELR NFSSLRAILS ENSBTAP00000010783/1-713 NTVTGCVLGS VLGEPGLAAP QRAQRLEKWI RIAQRCRELR NFSSLRAILS ENSTTRP00000001679/1-707 NTVTGCVLGS VLGSPGLAAP QRAQRLEKWI RIAQRCRELR NFSSLRAILS bmy_16827T0/1-613 NTVTGCVLGS VLGSPGLAAP QRAQRLEKWI RIAQRCRELR NFSSLRAILS BACU002473/1-606 ---------- ---------- ---------- ---ERCRELR NFSSLRAILS 351 400 ENSP00000377075/1-716 ALQSNPIYRL KRSWGAVSRE PLSTFRKLSQ IFSDENNHLS SREILFQ-EE ENSBTAP00000010783/1-713 ALQSNPIYRL KRSWGAVSRE PLSTFRKLAQ IFSDENNHLS SREILSQVQE ENSTTRP00000001679/1-707 ALQSNPIYRL KRSWGALSRE PLSTFRKLSQ IFSDENNHLS SREILSQ-EE bmy_16827T0/1-613 ALQSNPIYRL KRSWGAVSRE PLSTFRKLSQ IFSDENNHLS SREVLSQ-VQ BACU002473/1-606 ALQSNPIYRL KRSWGAVSRE PLSTFRKLSQ IFSDENNHLS SREILSQ-EE 401 450 ENSP00000377075/1-716 ATEGSQEEDN TPGSLPSKPP PGPVPYLGTF LTDLVMLDTA LPDMLEGDLI ENSBTAP00000010783/1-713 ATQGPQEGDA PTGSPSSKLP PGPIPYLGTF LTDLVMLDTA LPDMLKGDLI ENSTTRP00000001679/1-707 AT----EENA PPGSLPSKLP PGPIPYLGTF LTDLVMLDTA LPDMLEGDLI bmy_16827T0/1-613 ------MGED PSDPRPRKGT QGPAGH---- ---------- ---------- BACU002473/1-606 AT----EENA PPGSLPS--- ---------- ---------- ------GDLI 451 500 ENSP00000377075/1-716 NFEKRRKEWE ILARIQQLQR RCQSYTLSPH PPILAALHAQ NQLTEEQSYR ENSBTAP00000010783/1-713 NFEKRRKEWE ILARIQQLQR RCQSYCLSPH PPILAALRAQ HKLSEEQSYR ENSTTRP00000001679/1-707 NFEKRRKEWE ILAHIQQLQR RCQSYCLSSH LPILAALRTQ RQLSEEQSYR bmy_16827T0/1-613 ---------- ---------- -----CLRRL PRRMPPQEAY PH------YR BACU002473/1-606 NFEKRRKEWE ILAHIQQLQR RCQSYCLSSH LPILAALRTQ RQLSEEQSYR 501 550 ENSP00000377075/1-716 LSRVIEPPAA SCPSSPRIRR RISLTKRLSA KLAREKSSSP SGSPGDPSSP ENSBTAP00000010783/1-713 ISRVIEPPAS SCPSSPCIRR QISLTKRLSA KLSRERVSSP GGSPGDPSSS ENSTTRP00000001679/1-707 ISRVIEPPAA SCPSSPRVRR RISLTKRLSA KLSRERGSSP GGSPRDPSSS bmy_16827T0/1-613 ISRVIEPPAA SCPSSPRIRR RISLTKRLSA KLSRERGSSP GGSPKDPSSS BACU002473/1-606 ISRVIEPPAA SCPSSPRVRR RISLTKRLSA KLSRERGSSP GGSPKDPSSS 551 600 ENSP00000377075/1-716 TSSLCISPSV SPGSPPSSPR SRDAPAGSPP ASPGPQGPST KLPLSLDLPS ENSBTAP00000010783/1-713 TSSL------ SPASPPSSPR TKDPPTGSPP ASPGPQSPST KLPLSPDLPG ENSTTRP00000001679/1-707 TSSL------ SPASPPSSPR TRDPPPGSPP ASPGPQGPST KPPLSPDLPG bmy_16827T0/1-613 TSSL------ SPASPPSSPR TRDPPPGSPP ASPGPQGPST KLPLSPDLPG BACU002473/1-606 TSSL------ SPASPPSSPR TRDPPPGSPP ASPGPQGPST KLPLSPDLPG 601 650 ENSP00000377075/1-716 PRPFALPLGS PRIPLPAQQS SEARVIRVSI DNDHGNLYRS ILLTSQDKAP ENSBTAP00000010783/1-713 PWSLALPLSG PRISLPGQQG SEARVIRVSI DNDHGNLYRS ILLTSQDKAP ENSTTRP00000001679/1-707 PRTLALPLSG PHISLPGQQG SEACVVRVSI DNDHGNLYRS ILLTSQDKAS bmy_16827T0/1-613 PRTLALPSSG PHIALPGQQG SEACVIRVSI DNDHGNLYRS ILLTSQDKAP BACU002473/1-606 PRTLALPLSG PHIALPGQQG SEACVIRVSI DNDHGNLYRS ILLTSQDKAP 651 700 ENSP00000377075/1-716 SVVRRALQKH NVPQPWACDY QLFQVLPGDR VLLIPDNANV FYAMSPVAPR ENSBTAP00000010783/1-713 TVVQRALEKH NVAEPWVQDY QLFQVLPGDR ELLIPDNANV FYAMSPAAPG ENSTTRP00000001679/1-707 SVVQRALEKH NVAQPWAQDY QLFQALPGDR ELLIPDNANV FYAMSPAGPG bmy_16827T0/1-613 SVVQRALEKH SVAQPWARDY QLFQVLPGDR ELLIPDNANV FYAMSPAAPG BACU002473/1-606 SVVQRALEKH NVAQPWARDY QLFQVLPGDR ELLIPDNANV FYAMSPAAPG 701 750 ENSP00000377075/1-716 DFMLRRKEGT RNTLSVSPS ENSBTAP00000010783/1-713 DFVLRRKEGA QHTTSVSLS ENSTTRP00000001679/1-707 DFVLRRKEGA RHTTSVSPA bmy_16827T0/1-613 DFMLRRKEGA RHTTSVSPT BACU002473/1-606 DFVLRRKEGA RHTTSVSPT