KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:11 2014 Check: 00 .. Name: ENSTTRP00000001685/1-391 Len: 633 Check: 2135 Weight: 1.00 Name: bmy_16825T0/1-567 Len: 633 Check: 9660 Weight: 1.00 Name: ENSP00000252455/1-528 Len: 633 Check: 5173 Weight: 1.00 Name: ENSBTAP00000010787/1-533 Len: 633 Check: 7295 Weight: 1.00 // 1 50 ENSTTRP00000001685/1-391 MLL-VLLLLP MCWAVEVKRP RGVSLTXXXX XXXXXXXXXX XXXXXXXXXX bmy_16825T0/1-567 MLL-VLLLLP MCWAVEVKRP RGVSLTNHHF YDESKPFTCL DGSASVPFDQ ENSP00000252455/1-528 MLLPLLLLLP MCWAVEVKRP RGVSLTNHHF YDESKPFTCL DGSATIPFDQ ENSBTAP00000010787/1-533 MLL-LLLLLP MCWAVEVRRP RGVSLTNHHF YDESKPFTCL DGSASIPFDQ 51 100 ENSTTRP00000001685/1-391 XXXXXXXXXX XXXXXXXXXX ---XXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16825T0/1-567 AQPPVPTAAS TAPTLATSPC TSPPDGS--- ---------- ---------- ENSP00000252455/1-528 VNDDYCDCKD GSDEPGTAAC ---PNGSFHC TNTGYKPLYI PSNRVNDGVC ENSBTAP00000010787/1-533 VNDDYCDCKD GSDEPGTAAC ---PNGSFHC TNTGYKALYI SSRWVNDGVC 101 150 ENSTTRP00000001685/1-391 XXXXXXXXXX XXXXXXXXXX EKGRKERETL QQMAEVTREG FRLKKILIED bmy_16825T0/1-567 ---------- -------TME EKGRKERETL QQMAEVTREG FRLKKILIED ENSP00000252455/1-528 DCCDGTDEYN SGVICENTCK EKGRKERESL QQMAEVTREG FRLKKILIED ENSBTAP00000010787/1-533 DCCDGTDEYN SGIVCENTCK EKGRKERETL QQMAEVTREG FRLKKILIED 151 200 ENSTTRP00000001685/1-391 WKRAREEKQK KLTELQAGKK SLEDQVELLR TLKEEAEKPE KEAKDQHRKL bmy_16825T0/1-567 WKKAREEKQ- ---------- ---------- ---EEAEKPE KEAKDQHRKL ENSP00000252455/1-528 WKKAREEKQK KLIELQAGKK SLEDQVEMLR TVKEEAEKPE REAKEQHQKL ENSBTAP00000010787/1-533 WKKAREEKQK KLIELQAGKK SLEDQVEVLR TLKEEAEKPE EAAKDQHRRL 201 250 ENSTTRP00000001685/1-391 WEEQLAASKA QREQELATSA FQELDDDMDG AVSVAELQTH PELDTDGDGA bmy_16825T0/1-567 WEEQLAASKA QREQELATSA FQELDDDMDG AVSVAELQTH PELDTDGDGA ENSP00000252455/1-528 WEEQLAAAKA QQEQELAADA FKELDDDMDG TVSVTELQTH PELDTDGDGA ENSBTAP00000010787/1-533 WEEQQAISKE QRERELAASA FQELDDDMDG AVSVAELQTH PELDTDGDGA 251 300 ENSTTRP00000001685/1-391 LSEGEAQTLL GGDTQTDAAS FSDRIWAAIR DKYRSEVLPT D-LPSPPAPA bmy_16825T0/1-567 LSEGEAQTLL GGDTQTDAAS FSDRIWAAIR DKYRSEVLPT D-PPSPSAAD ENSP00000252455/1-528 LSEAEAQALL SGDTQTDATS FYDRVWAAIR DKYRSEALPT D-LPAPSAPD ENSBTAP00000010787/1-533 LSEGEAQTLL GGDAQMDAAF FYDRVWAAIR DKYRSEVLPT EYPPSPPAPD 301 350 ENSTTRP00000001685/1-391 LTEPREEQPP VPSQPAEEED EEEEETEEEE GGEEGEEEDS -------QET bmy_16825T0/1-567 LTEPKEEQPP VPSQPTEEED EEEEETEEEE EGEEGEEEDS QVQGEQPKET ENSP00000252455/1-528 LTEPKEEQPP VPSSPTEEEE EEEEE-EEEE AEEEEEEEDS -------EEA ENSBTAP00000010787/1-533 VMEPKEEQPP MPSPPTEEED EDEED-EETE EDEDEEDEDS --QGEQPKDA 351 400 ENSTTRP00000001685/1-391 PPPVVPPQTA SPTEEDKMPP YDEQTQAFIN AAQEARNKFE EAERSLKDVE bmy_16825T0/1-567 PSPVVPPQTA SPTEEDKMPP YDEQTQAFIN AAQEARNKFE EAERSLKDVE ENSP00000252455/1-528 PPPLSPPQPA SPAEEDKMPP YDEQTQAFID AAQEARNKFE EAERSLKDME ENSBTAP00000010787/1-533 PPPAPAPQTA SPTEEDRMPP YDEQTQAFIN AAQEARNKFE EAERSLKDME 401 450 ENSTTRP00000001685/1-391 ESI------- ---------- ---------- ---------- ---------- bmy_16825T0/1-567 ESIRNLEQEI SFDFGPNGEF AYLYSQCYEL TTNECVPHGQ AGWVGWEVLG ENSP00000252455/1-528 ESIRNLEQEI SFDFGPNGEF AYLYSQCYEL TTNE------ ---------- ENSBTAP00000010787/1-533 ESIRNLEQEI SFDFGPNGEF AYLYSQCYEL TTNE------ ---------- 451 500 ENSTTRP00000001685/1-391 ---------- ---------- ---------- ---------- ---------- bmy_16825T0/1-567 LSKDGGSEGG GLRSSHWSLR YLCAPCGGGC HGGWGWVPPT HAPHPVTGTS ENSP00000252455/1-528 ---------- ---------- YVYRLC---- ---------- ---------- ENSBTAP00000010787/1-533 ---------- ---------- YVYRLC---- ---------- ---------- 501 550 ENSTTRP00000001685/1-391 ---------- ---------- ---------- ---------- ---------- bmy_16825T0/1-567 TGSAPSSSSR RNPNSVAPPP ASGEWAQAGP PSQPLVPPAA RPAPLSTPLS ENSP00000252455/1-528 ---------- ---------- ---------- ---PFKLVSQ KPKLGGSPTS ENSBTAP00000010787/1-533 ---------- ---------- ---------- ---PFKLVSQ KPKLGGSPTS 551 600 ENSTTRP00000001685/1-391 ---------- ---------- ---------- ---------- ---------- bmy_16825T0/1-567 RSTWGSWAGP DHDKFSAMKY EQGTGCWQGP NRSTTVRLLC GKETVVTSTT ENSP00000252455/1-528 LGTWGSWIGP DHDKFSAMKY EQGTGCWQGP NRSTTVRLLC GKETMVTSTT ENSBTAP00000010787/1-533 LGTWGSWAGP DHDKFSAMKY EQGTGCWQGP NRSTTVRLLC GKETVVTSTT 601 650 ENSTTRP00000001685/1-391 ---------- ---------- ---------- --- bmy_16825T0/1-567 EPSRCEYLME LMTPAACPEP PPEPPAEGNH DEL ENSP00000252455/1-528 EPSRCEYLME LMTPAACPEP PPEAPTEDDH DEL ENSBTAP00000010787/1-533 EPSRCEYLME LMTPAACPEP PPEYPVEGDH DEL