KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:14 2014 Check: 00 .. Name: ENSP00000385090/1-1024 Len: 1053 Check: 2642 Weight: 1.00 Name: ENSBTAP00000010814/1-1040 Len: 1053 Check: 5405 Weight: 1.00 Name: ENSTTRP00000000506/1-1025 Len: 1053 Check: 8790 Weight: 1.00 Name: bmy_05232T0/1-974 Len: 1053 Check: 3537 Weight: 1.00 Name: BACU014589/1-953 Len: 1053 Check: 6909 Weight: 1.00 // 1 50 ENSP00000385090/1-1024 ---------- ---------- ---MNFIKDN SRALIQRMGM TVIKQITDDL ENSBTAP00000010814/1-1040 MYSLTSRNAV NKDFYRHLET VWEVNFIKEN SQVLIQRMGM TVIKQILDEL ENSTTRP00000000506/1-1025 ---------- ---------- ---MDFIKEN SQILIQRMGM TVIKQILDEL bmy_05232T0/1-974 ---------- ---------- ---MNFIKEN SQILIQRMGM TVIKQILDEL BACU014589/1-953 ---------- ---------- ---------- -------MGV TVIKQILDEL 51 100 ENSP00000385090/1-1024 FVWNVLNREE VNIICCEKVE QDAARGIIHM ILKKGSESCN LFLKSLKE-W ENSBTAP00000010814/1-1040 FVWNVMNYEE VNVICGEKFE QDAARGVIHM ILKKGSEACN LFLKSLEK-W ENSTTRP00000000506/1-1025 FVWNVLNDNE VNIICCEKVE QVXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05232T0/1-974 FVWNVLNYGE VNIICCEKVE QEAARGIIHM ILKKGSEACN LFLKSLEK-W BACU014589/1-953 FVWNVLNYEE VNIICCEKVE QDAARGIIHM ILKKGSEACN LFLKSLEK-W 101 150 ENSP00000385090/1-1024 NYPLFQDLNG QSLFHQTSEG DLDDLAQDLK DLYHTPSFLN FYPLGEDIDI ENSBTAP00000010814/1-1040 NYPLFQELHG LSLFHQMSEE DLDDLAQELK YFYQSPSFLN FYPLGEDIDI ENSTTRP00000000506/1-1025 XXXXXXXXXX XXLFYQMSEE DLDGLAQDLK DLYHTPSFLN YYPLGEDIDI bmy_05232T0/1-974 NYPLFQDLHG LSLFHQMSEE DLDGLAQDLK DLYHTPSFLN YYPLGEDIDI BACU014589/1-953 NYPLFQDLHG LSLFHQMSEE DLDGLAQDLK DLYHTPSFLN YYPLGEDIDI 151 200 ENSP00000385090/1-1024 IFNLKSTFTE PVLWRKDQHH HRVEQLTLNG LLQALQSPCI IEGESGKGKS ENSBTAP00000010814/1-1040 MFNLKSTFTE PVLWKKDQHH HRLEQLTLSG LLDTLQSPCI IEGESGKGKS ENSTTRP00000000506/1-1025 IFNLKSTFTE PVLWRKDQHH HRLEQLTLSG LLDTLQSPCI IEGEPGKGKS bmy_05232T0/1-974 IFNLKSTFTE PVLWRKDQHH HRLEQLTLSG LLDTLQSPCI IEGESGKGKS BACU014589/1-953 IFNLKSTFTE PVLWRKDQHH HRLEQLTLSG LLDTLQSPCI IEGESGKGKS 201 250 ENSP00000385090/1-1024 TLLQRIAMLW GSGKCKALTK FKFVFFLRLS RAQGGLFETL CDQLLDIPGT ENSBTAP00000010814/1-1040 TLLQRIAMLW ASGECQALTK FKLVFFLRLS RAQGGLFETL SDQLLDIPDV ENSTTRP00000000506/1-1025 TLLQRIAMLW ASGECQALTK FKLVLFLRLS RAQGGLFKTL CDQLLDIPDT bmy_05232T0/1-974 TLLQRIAMLW ASGECQALTK FKLVLFLHLS RAQSGLFETL CDQLLDIPDT BACU014589/1-953 TLLQRIAMLW ASGECQALTK FKLVLFLHLS RAQGGLFETL CDQLLDIPDT 251 300 ENSP00000385090/1-1024 IRKQTFMAML LKLRQRVLFL LDGYNEFKPQ NCPEIEALIK ENHRFKNMVI ENSBTAP00000010814/1-1040 ISKQTFMARL LKLRQRVLFL LDGYNEFKAQ NCPEIEALIK ENHRFKNMVI ENSTTRP00000000506/1-1025 IRKQTFMAML LKLRQRVLFL LDGYNEFKAQ NCPEIEALIK ENHRFKNMVI bmy_05232T0/1-974 IRKQTFMAML LKLRQRVLFL LDGYNEFKAQ NCPEIEALIK ENHRFKNMVI BACU014589/1-953 IRKQTFMAIL LKLRQRVLFL LDGYNEFKAQ NCPEIEALIK ENHRFKNMVI 301 350 ENSP00000385090/1-1024 VTTTTECLRH IRQFGALTAE VGDMTEDSAQ ALIREVLIKE LAEGLLLQIQ ENSBTAP00000010814/1-1040 VTTTTESLRH IRQFGALIAE VGDMTESSAQ ALIQEVLRKE FAEDLLLQIQ ENSTTRP00000000506/1-1025 VTTTTECLRY IRQFGALIAE VGDMTEDSAQ ALIREVLIKE LAEGLLLQIQ bmy_05232T0/1-974 VTTTTECLRY IRQFGALIAE VGDMTEESAQ ALIREVLIKE LAEGLLLQIQ BACU014589/1-953 VTTTTECLRY IRQFGALIAE VGDMTEDSAQ ALIREVLIKE LAEGLLLQIQ 351 400 ENSP00000385090/1-1024 KSRCLRNLMK TPLFVVITCA IQMGESEFHS HTQTTLFHTF YDLLIQKNKH ENSBTAP00000010814/1-1040 KSRCLRNLMK TPLFVVITCA IQMGKSEFHS HTQTTLFCTF YDLLINKNRH ENSTTRP00000000506/1-1025 KSRCLRNLMK TPLFVVITCA IQMGKSEFHS NTQTTLFCAF YDLLVNKNKH bmy_05232T0/1-974 KSRCLRNLMK TPLFVVITCA IQMGKSEFHS NTQTTLFCAF YDLLINKNKH BACU014589/1-953 KSRCLRNLMK TPLFVVITCA IQMGKSEFHS NTQTTLFCAF YDLLINKNKH 401 450 ENSP00000385090/1-1024 KHKGVAASDF IRSLDHCGDL ALEGVFSHKF DFELQDVSSV NEDVLLTTGL ENSBTAP00000010814/1-1040 KRKGLAPSEV TQSLDHCGDL ALEGVFSRRF DFEPDDLSNV NEDVLLTTGL ENSTTRP00000000506/1-1025 KRKGVAPSEV TRSLDHCGDL ALEGVFSHRF DFEPDDLSSV NEDVLLTTGL bmy_05232T0/1-974 KRKGVAPSEV TRSLDHCGDL ALEGVFSHRF DFEPEDLSSV NEDVLLTTGL BACU014589/1-953 KRKGVAPSEV TRSLDHCGDL ALEGVFSHRF DFEPDDLSSV NEDVLLTTGL 451 500 ENSP00000385090/1-1024 LCKYTAQRFK PKYKFFHKSF QEYTAGRRLS SLLTSHEPEE VTKGNGYLQK ENSBTAP00000010814/1-1040 LCKYTAQRFK PKYKFFHQSF QEYTAGRRLS SLLTSGEPAE VTKGNGHLQK ENSTTRP00000000506/1-1025 LCKYTAQRFK PKYKFFHKSF QEYTAGRRLS SLLTSEEPAE VTKGNGHLQK bmy_05232T0/1-974 LCKYTAQRFK PKYKFFHKSF QEYTAGRRLS SLLTSEEPAE VTKGNSHLQK BACU014589/1-953 LCKYTAQRFK PKYKFFHKSF QEYTAGRRLS SLLTSEEPAE VTKGNGHLQK 501 550 ENSP00000385090/1-1024 MVSISDITST YSSLLRYTCG SSVEATRAVM KHLAAVYQHG CLLGLSIAKR ENSBTAP00000010814/1-1040 MVSISDITSK YSNLLLYTCG SSAEATRTVL KHLSSVYQHG SLLGLSVTKR ENSTTRP00000000506/1-1025 MVSISDITSK YSNLLLYTCG SSAEATRTVL KHLASVYQHG SLGGLLVTKR bmy_05232T0/1-974 MVSISDITSK YSNLLLYTCG SSAEATRTVL KHLASVYQHG SLGGLFVTKR BACU014589/1-953 MVSISDITSK YSNLLLYTCG SSAEATRTVL KHLASVYQHG SLGGLFVTKR 551 600 ENSP00000385090/1-1024 PLWRQESLQS VKNTTEQEIL KAININSFVE CGIHLYQEST SKSALSQEFE ENSBTAP00000010814/1-1040 PLWRQESMQN MKSTTVQEIL KAININSFTE CGINLFHESI STSSLSKEFE ENSTTRP00000000506/1-1025 PLWRQESMQN VKSTTVQEIL KAININSFTE CGINLFCESI STSNLREEFE bmy_05232T0/1-974 PLWRQESMQN VKSTTVQEIL KAININSFTE CGINLFCESI STSSLREEFE BACU014589/1-953 PLWRQESMQN VKSTTVQEIL KAININSFTE CGINLFCESI STSNLREEFE 601 650 ENSP00000385090/1-1024 AFFQGKSLYI NSGNIPDYLF DFFEHLPNCA SALDFIKLDF YGGAMASWEK ENSBTAP00000010814/1-1040 DFFRGKSLYI NSENIPDYLF DFFEDLPNCA SALDFVKLDF YGGAV----- ENSTTRP00000000506/1-1025 AFFHGKSLHI NSENIPDYLF DFFENLPNCA SALDFVKLDL YGGAVASQDK bmy_05232T0/1-974 AFFHGKSLHI NSENIPDYLF DFFENLPNCA SALDFVKLDL YGGAVASQDE BACU014589/1-953 AFFHGKSLHI NSENIPDYLF DFFENLPNCA SALDFVKLDL YGGAVASQDE 651 700 ENSP00000385090/1-1024 AAEDTGGIHM EEAPETYIPS RAVSLFFNWK QEFRTLEVTL RDFSKLNKQD ENSBTAP00000010814/1-1040 --RDISGNQD QEFSGTYIPS RAVSLFFNWK QEFKTLDVTL RDFCKLSKKD ENSTTRP00000000506/1-1025 TTEDASRVHM QESSGTYIPS RAVSLFFNWK QEFKTLEVTL RDFCKLNKQD bmy_05232T0/1-974 TAKDARRIHM QESSGTYIPS RAVSLFFNWK QEFKTLEVTL RDFCKLNKQD BACU014589/1-953 TAEDASRIHM QESSGTYIPS RAVSLFFNWK QEFKTLEVTL RDFCKLNKQD 701 750 ENSP00000385090/1-1024 IRYLGKIFSS ATSLRLQIKR CAGVAGSLSL VLSTCKNIYS LMVEASPLTI ENSBTAP00000010814/1-1040 IKYLEKIFSS ATSLRLHIKR CVGMAGSLSS VLSTCKNIHS LIVEASPLTL ENSTTRP00000000506/1-1025 ITYLGKIFSS AKSLRLYIKR CAGMAGSLSS VLSTFKDIHS IIVEASPLTL bmy_05232T0/1-974 IKYLGKIFSS ATSLRLYIKR CAGVAGSLSS VLSTCKNIHS IIVEASPLAL BACU014589/1-953 IKYLGKIFSS ATSLRLYIKR CAGVAGSLSS VLSTCKNIHS IIVEASPLAL 751 800 ENSP00000385090/1-1024 EDERHITSVT NLKTLSIHDL QNQRLPGGLT DSLGNLKNLT KLIMDNIKMN ENSBTAP00000010814/1-1040 EDEQHITSVT NLQTLGVHDL QIQRLPGGLT DNLGNLKNLM KLILDNIQMN ENSTTRP00000000506/1-1025 EDERHITSVT NLHTLSIHNL ETQQLPGGLT DSLGNLKNLM TLILDNIKMN bmy_05232T0/1-974 EDERHITSVT NLHTLSIHDL GTQRLPGGLT DSLGNLKNLM KLILDNIKMN BACU014589/1-953 EDERHITSVT NLHTLSIHDL GTQRLPGGLT DSLGNLKNLM KLILDNIKMN 801 850 ENSP00000385090/1-1024 EEDAIKLAEG LKNLKKMCLF HLTHLSDIGE GMDYIVKSLS SEPCDLEEIQ ENSBTAP00000010814/1-1040 EEDALKLAEG LTNLKKMCLL RLTHLSDIGE GMDYIVKSLS AEPCDLKEIQ ENSTTRP00000000506/1-1025 EEDAIKLAEG LTNLKKMCLL RLTHLSDIGE GMDYIVKSLS AEPCDLKEIQ bmy_05232T0/1-974 EEDAIKLAEG LTNLKKMCLL RLTRLSDIGE GMDYIVKSLS AEPCDLKEIQ BACU014589/1-953 EEDAIKLAQN LHNLAKLS-- ---------- ---------- ---------- 851 900 ENSP00000385090/1-1024 LVSCCLSANA VKILAQNLHN LVKLSILDLS ENYLEKDGNE ALHELIDRMN ENSBTAP00000010814/1-1040 LVSCCLSGNA VKTLAQNLHN LARLSILDLS ENHLEKDGKE ALQQLIDRLH ENSTTRP00000000506/1-1025 LVSCCLSGNA VKTLAQNLHN LAKLSILDLS ENHLEKDGNE ALHELIDRLH bmy_05232T0/1-974 LVSCCLSGNA VKT------- ---------- ---------- ----IVDRLH BACU014589/1-953 ---------- ---------- -----ILDLS ENHLEKDGNE ALHELIDRLH 901 950 ENSP00000385090/1-1024 VLEQLTALML PWGCDVQGSL SSLLKHLEEV PQLVKLGLKN WRLTDTEIRI ENSBTAP00000010814/1-1040 ILEQLTVLML PWCGDVRVSL ARLLEQLERV PQLVKLGLKN WRLTDAEIRI ENSTTRP00000000506/1-1025 ILEQLNVLML PWCSDERVSL DRLLEQLKGA PQLIKLGLRN WRLTDAEVRI bmy_05232T0/1-974 ILEQLNVLML PWCGDGRVSL ARLLEQLKGA PQLIKLGLRN WRLTDAEIRI BACU014589/1-953 ILEQLNVLML PWCSDVRVSL ARLLEQLKGA PQLIKLGLRN WRLTDAEIRI 951 1000 ENSP00000385090/1-1024 LGAFFGKNPL KNFQQLNLAG NRVSSDGWLA FMGVFENLKQ L-----VFFD ENSBTAP00000010814/1-1040 LGVFFEKNPL ENFQQLDLAG NCVSSDGWLA FMSGFENLKE L-----VFFD ENSTTRP00000000506/1-1025 LGAFFEKNPL KNFQQLDLAG NCVSSDGWLA FMSVFENLKQ L-----VFFD bmy_05232T0/1-974 LGAFFEKNLL KNFQQLDLAG NCVAADGWKC HKS--SGVRQ AMSTNRVIFD BACU014589/1-953 LGAFFEKNLL KNFQQLDLAG NCVSSDGWLA FMSVFENLKQ L-----VFFD 1001 1050 ENSP00000385090/1-1024 FSTKEFLPDP ALVRKLSQVL SKLTFLQEAR LVGWQFDDDD LSVITGAFKL ENSBTAP00000010814/1-1040 FSTKGLLPDA SLVRKLSHVL SKLTFLQEVQ LVGWQLDDDD VSVLKGAFKL ENSTTRP00000000506/1-1025 FSTERLLPDA SLVRKLSHVL SKLTFLQEAR LVGWQFDDYD VSVIKGAFKL bmy_05232T0/1-974 FP----LSFA TVRWNFTRIL NEKQFQ---- ---LQYTAD- ---------- BACU014589/1-953 FSTKRLLPDA SLVRKLSHVL SKLTFLQEAR LVGWQFDDDD VSVIKGAFKL 1051 1100 ENSP00000385090/1-1024 VTA ENSBTAP00000010814/1-1040 VIA ENSTTRP00000000506/1-1025 VTA bmy_05232T0/1-974 LKE BACU014589/1-953 VTA