KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:17 2014 Check: 00 .. Name: ENSBTAP00000010847/1-640 Len: 726 Check: 8691 Weight: 1.00 Name: ENSP00000344260/1-639 Len: 726 Check: 5603 Weight: 1.00 Name: bmy_20831T0/1-525 Len: 726 Check: 6078 Weight: 1.00 Name: ENSTTRP00000007312/1-625 Len: 726 Check: 8486 Weight: 1.00 // 1 50 ENSBTAP00000010847/1-640 MLVRKRRRHG PCRRQALLAL LALGCVLLML GALHPPPHAL PRAPPAPQAA ENSP00000344260/1-639 MLLRKRYRHR PCRLQFLLLL LMLGCVLMMV AMLHPPHHTL HQTVTA-QAS bmy_20831T0/1-525 ---------- ---------- ---------- --MHP----- TEGCPA---- ENSTTRP00000007312/1-625 MLVRKRCRRG PCRLQFLL-- --LGCVLLML AVLHPPLPAL PQAVPA-QVA 51 100 ENSBTAP00000010847/1-640 GRSPQAGYRL DFGDPQEWLL ESEEEDREY- --DRLPPLVS LREDQLLVAV ENSP00000344260/1-639 KHSPEARYRL DFGESQDWVL EAEDEGEEYS PLEGLPPFIS LREDQLLVAV bmy_20831T0/1-525 -ENPERA--- ---------- ---------- ---------- ---------- ENSTTRP00000007312/1-625 KHGPEAGYRL DFGESQEWVL ESKDEDQEYG PLEGLPPFIS LREDQLLVAV 101 150 ENSBTAP00000010847/1-640 ASPRAGRNRS RGGRGGGYRL IPRPQKQQNP AAPERDWAAE EEDEEDGEAS ENSP00000344260/1-639 ALPQARRNQS QGRRGGSYRL IKQP-RRQDK EAPKRDWGAD EDGE----VS bmy_20831T0/1-525 ---------- -GELGG---- -----QPLAE EAPARACCSP QHPA------ ENSTTRP00000007312/1-625 ASPRARGNQS QGKRGGSYQL IKRLSRRPDE DAPERDWAAE EEDA---GAS 151 200 ENSBTAP00000010847/1-640 EEGGPGSI-- ---GMSFTIS AIIVLKKVYP NADFPLVKCL QQPPPADSLP ENSP00000344260/1-639 EEEELTPFSL DPRGLQEALS ARIPLQRALP EVRHPL--CL QQ-HPQDSLP bmy_20831T0/1-525 ---------- -------SLP CR-------- --------CL QQ-HPRDSLP ENSTTRP00000007312/1-625 EEEALTSL-- ---SLEEALS ARIPLQRALP EVRHPL--CL QQ-QPGDSLP 201 250 ENSBTAP00000010847/1-640 TASVVLCFHD EAWATLLRTV HSILDTAPRA FLKEIVLVDD LSQQ------ ENSP00000344260/1-639 TASVILCFHD EAWSTLLRTV HSILDTVPRA FLKEIILVDD LSQQ------ bmy_20831T0/1-525 TASVILCFHD EAWSTLLRTV HSILDTAPRA YLKEIILVDD LSQQGAHGLP ENSTTRP00000007312/1-625 TASVILCFHD EAWSTLLRTV HSILDTAPRA YLKEIILVDN LSQQ------ 251 300 ENSBTAP00000010847/1-640 ---------- ---------- ---------- ---------- ----GQLKMA ENSP00000344260/1-639 ---------- ---------- ---------- ---------- ----GQLKSA bmy_20831T0/1-525 PGSLGRAWTL GGSRAQTGTD NDPSDGHRNL AGCGICDPTA LSIPGQLKSA ENSTTRP00000007312/1-625 ---------- ---------- ---------- ---------- ----GQLKSA 301 350 ENSBTAP00000010847/1-640 LSEHVAQLEG VKLLRSNRRL GASGARMLGA ARATGDVLVF MDAHCECQPG ENSP00000344260/1-639 LSEYVARLEG VKLLRSNKRL GAIRARMLGA TRATGDVLVF MDAHCECHPG bmy_20831T0/1-525 LSEYVARLEG VKLLRSNRRL GAARARMLGA ARATGDVLVF MDAHCECHPG ENSTTRP00000007312/1-625 LSEYVARLEG VKLLRSNRRL GAARARMLGA ARATGDVLVF MDAHCECHPG 351 400 ENSBTAP00000010847/1-640 WLEPLLARIA GDRSRVVSPV LDVIDWKTLQ YYPSADQQRG VLDWKLDFHW ENSP00000344260/1-639 WLEPLLSRIA GDRSRVVSPV IDVIDWKTFQ YYPSKDLQRG VLDWKLDFHW bmy_20831T0/1-525 WLEPLLARIA GD-------- ---------- ---------- ---------- ENSTTRP00000007312/1-625 WLEPLLARIA GD----VSPV LDVD--KTFQ YYPSKD-QRG VLDWKLDFHW 401 450 ENSBTAP00000010847/1-640 EPLPEHERRA LASPVSPIRS PVVPGGVVAV DRHYFQNTGA YDPLLSLQGG ENSP00000344260/1-639 EPLPEHVRKA LQSPISPIRS PVVPGEVVAM DRHYFQNTGA YDSLMSLRGG bmy_20831T0/1-525 ---------- --------RS PVVPGGVVAT DRHYFQNTGA YDPLMSLRGG ENSTTRP00000007312/1-625 EPLPERERKA LLSPISPIRS PVLPGGVVAM DRHYFQNTGA YDPLMSLRGG 451 500 ENSBTAP00000010847/1-640 GNLELSLK-- ---------- ---------T WLCGGSVEIL PCSRVGHLYK ENSP00000344260/1-639 ENLELSFK-- ---------- ---------A WLCGGSVEIL PCSRVGHIYQ bmy_20831T0/1-525 ENLELSLKPL TPHVAGEAYR GVDLLLSLQT WLCGGSVEIL PCSRVGHVYR ENSTTRP00000007312/1-625 ENLELSLK-- ---------- ---------T WLCRGSVEIL PCSRVGHVYR 501 550 ENSBTAP00000010847/1-640 NEDAHSQLEQ EAALQNKVRI AETWLDSFKE TFYKQSPEAL SLSKAEKPDC ENSP00000344260/1-639 NQDSHSPLDQ EATLRNRVRI AETWLGSFKE TFYKHSPEAF SLSKAEKPDC bmy_20831T0/1-525 NQDAHSPLDW EATLRNKVRI AETWLGTFKE TFYSHSPEAF SLSKAGKPDC ENSTTRP00000007312/1-625 NQDAHSPFDW EATLRNKVRI AETWLGAFKE TFYRHSPEAF SLSKAGKPDC 551 600 ENSBTAP00000010847/1-640 TERQQLQRRL GCRTFHWFLA NVYPELYPLE RRPRFSG--- ----KLHNTG ENSP00000344260/1-639 MERLQLQRRL GCRTFHWFLA NVYPELYPSE PRPSFSG--- ----KLHNTG bmy_20831T0/1-525 TERQQLQRRL GCRTFHWFLA NIYPELYPSE RRPRFSGKAR HDKNKLHNTG ENSTTRP00000007312/1-625 TERQQLQRRL GCRTFHWFLA NIYPELYPSE RRPRFSG--- ----KLHNTG 601 650 ENSBTAP00000010847/1-640 LGFCAYCAGQ EAAPGCAMML APCRDGEPQQ RLEHTGRSTI RYSGPGHLCF ENSP00000344260/1-639 LGLCADCQAE GDILGCPMVL APCSDSRQQQ YLQHTSRKEI HFGSPQHLCF bmy_20831T0/1-525 LGFCADCQAE GDILGCAMML APCSDSQQQQ HLDHMGRKEI HYGSPQHLCF ENSTTRP00000007312/1-625 LGFCADCLAE GDVLGCAMML APCSDSQQQQ HLDHMGRKEI HYGSPHHLCF 651 700 ENSBTAP00000010847/1-640 DVRREQVILQ NCTEGGPAIH QQHWDHQENG MIVHILSGKC MEAVVQENNK ENSP00000344260/1-639 AVRQEQVILQ NCTEEGLAIH QQHWDFQENG MIVHILSGKC MEAVVQENNK bmy_20831T0/1-525 DVRREQVILQ NCTREGPDIH QQHWDYQENG MIVHILSGKC IEAVMQENNK ENSTTRP00000007312/1-625 DVRREQVILQ NCTKGGPDIH RQHWDYQENG MIVHILSGKC IEAVMQENNK 701 750 ENSBTAP00000010847/1-640 DLYLRECDGK ASQLWRFDSV STVDER ENSP00000344260/1-639 DLYLRPCDGK ARQQWRFDQI NAVDER bmy_20831T0/1-525 DLYLRECDGK ASQLWRFDNV STVDEQ ENSTTRP00000007312/1-625 DLYLRECDGK ASQLWRFDNV STVDEQ