KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:20 2014 Check: 00 .. Name: ENSP00000366682/1-481 Len: 483 Check: 9479 Weight: 1.00 Name: ENSBTAP00000010869/1-470 Len: 483 Check: 2861 Weight: 1.00 Name: bmy_04026T0/1-453 Len: 483 Check: 323 Weight: 1.00 Name: BACU011830/1-467 Len: 483 Check: 2547 Weight: 1.00 Name: ENSTTRP00000001335/1-477 Len: 483 Check: 7322 Weight: 1.00 // 1 50 ENSP00000366682/1-481 MMLKSITESF ATAIHGLKVG HLTDRVIQRS KRMILDTLGA GFLGTTTEVF ENSBTAP00000010869/1-470 LPLKSVTESF AKVIHGLKVG HLTDRVIQRS KRMVLDALGV GLLGTSTEVF bmy_04026T0/1-453 MMLKSVTESL AKLIHGLKVG HLTDRVIQRS KRMILDTLGV GFLGTSTEVF BACU011830/1-467 ----SVTESL AKLIHGLKVG HLTDRVIQRS KRMILDTLGV GFLGTSTEVF ENSTTRP00000001335/1-477 ----SVTESF AKVIHGLKVG HLTDRVIQRS KRMILDTLGV GFLGTSTEVF 51 100 ENSP00000366682/1-481 HIASQYSKIY SSNISSTVWG QPDIRLPPTY AAFVNGVA-- IHSMDFDDTW ENSBTAP00000010869/1-470 HKTSGYSKIY SSNVSSTVWG QPELRLPPTY AAFVNGVA-- IHSMDFDDTW bmy_04026T0/1-453 HKAREYSKVR SS-------- MSTLELKPSV HIYSSNVSST IHSMDFDDTW BACU011830/1-467 HKAREYSKIY SSNVSSTVWG QPDFRLPPTY AAFVNGVA-- IHSMDFDDTW ENSTTRP00000001335/1-477 QKAREYSKIY SSNVSSTVWG QPDFRLPPTY AAFVNGVA-- VHSMDFDDTW 101 150 ENSP00000366682/1-481 HPATHPSGAV LPVLTALAEA LPRSPKFSGL DLLLAFNVGI EVQGRLLHFA ENSBTAP00000010869/1-470 HPATHPSGAV LPVLMALSEA LPPSPKYSGL DLLLAFNVGI EVQGRLLRFS bmy_04026T0/1-453 YPATHPSGAV LPVLMALSEA LPPSPKCSGL DLLLAFNVGI EVQGRLMHFS BACU011830/1-467 YPATHPSGAV LPVLMALSEA LPPSPKCSGL DLLLAFNVGI EVQGRLMHFS ENSTTRP00000001335/1-477 YPATHPSGAV LPVLMALSEA LPPSPKCSGL DLLLAFNVGI EVQGRLMHFS 151 200 ENSP00000366682/1-481 KEANDMPKRF HPPSVVGTLG SAAAASKFLG LSSTKCREAL AIAVSHAGAP ENSBTAP00000010869/1-470 KEAYDIPKRF HPPSVVGTLG SAAAASKFLG LSVTECQEAL AIAVSHAGAP bmy_04026T0/1-453 KEAKDIPK-- ---------- SAAAASKFLG LSMTECQEAL AIAVSHAGAP BACU011830/1-467 KEAKDIPKRF HPPSVVGTLG SAAAASKFLG LSMTECQEAL AIAVSHAGAP ENSTTRP00000001335/1-477 KEAKDIPKRF HPPSVVGTLG SAAAASKFLG LSMTECQEAL AIAVSHAGAP 201 250 ENSP00000366682/1-481 MANAATQTKP LHIGNAAKHG IEAAFLAMLG LQGNKQVLDL EAGFGAFYAN ENSBTAP00000010869/1-470 MANAATQTKP LHVGNAARHG LEAAFLAMLG LQGNKRVLDL ETGFGAFYTN bmy_04026T0/1-453 MANAATQTKP LHIGNAARHG LEAAFLAMLG LQGNKQVLDM ESGFGAFYAN BACU011830/1-467 MANAATQTKP LHIGNAARHG LEAAFLAMLG LQGNKQVLDM ESGFGAFYAN ENSTTRP00000001335/1-477 MANAATQTKP LHVGNAARHG LEAAFLAMLG LQGNKQVLDM ESGFGAFYAN 251 300 ENSP00000366682/1-481 YSPKVLPSIA SYSWLLDQQD VAFKRFPAHL STHWVADAAA SVRKHLVAER ENSBTAP00000010869/1-470 YSPKVLPDLD SHTWLLEKQD VAFKRFPAHL ATHWVADTAA SMRRHLVTDK bmy_04026T0/1-453 YAPKILPDVD SHTWLLDQQD VAFKLFPAHL ATHWVADAAA SVRKQLVRDR BACU011830/1-467 YAPKILPDVD SHTWLLDQQD VAFKLFPAHL ATHWVADAAA SVRKQLVRDR ENSTTRP00000001335/1-477 YAPKILPDVD SHTWLLDQQD VAFKLFPAHL ATHWVADAAA SVRKQLVRDR 301 350 ENSP00000366682/1-481 ALLPTDYIKR IVLRIPNVQY VNRPFPVSEH EARHSFQYVA CAMLLDGGIT ENSBTAP00000010869/1-470 SPLPIDRIER IVLRIPDVQY VNRPFPKSEH EARHSFQYVA CAMLLDGVIT bmy_04026T0/1-453 ALLPTDHTER IVLRIPDVQY VNRPFPDSEH EARHSFQYVA CAMLLDGAIT BACU011830/1-467 ALLPTDHTER IVLRIPDAQY VNRPFPDSEH EARHSFQYVA CAMLLDGTIA ENSTTRP00000001335/1-477 ALLPTDHMER IVLRIPDVQY VNRPFPDSEP EARHSFQYVA CAMLLDGAIT 351 400 ENSP00000366682/1-481 VPSFHECQIN RPQVRELLSK VELEYPPDNL PSFNILYCEI SVTLKDGATF ENSBTAP00000010869/1-470 VPAFHKRQIN RPQVRELLGK VELEHPRDNL PNFNTLYCEM SVALKDGSIF bmy_04026T0/1-453 VPSFHKHQVN RPWVRELLGK VELEHPRDNL PNFNTLYCEI SVALKDGAIF BACU011830/1-467 VPSFHKHQVD RPRVRELLGK VELEHPRDNR PNFNTLYCEI SVALKDGAIF ENSTTRP00000001335/1-477 ASSFHKHQVN RPRVRELLGK VELEHPQDNL PNFNTLYCEI SVALKDGAIF 401 450 ENSP00000366682/1-481 TDRSDTFYGH WRKPLSQEDL EEKFRANASK MLSWDTVESL IKIVKNLEDL ENSBTAP00000010869/1-470 TERSDTFYGH WRKPLSQKDL QEKFRTNSCR TLSCHAVERL IEIVENLEDL bmy_04026T0/1-453 TERSDTFYGH WRKPLSQKDL QEKFRANACR MLSCHTVERL IEIVENLEDL BACU011830/1-467 TERSDTFYGH WRKPLSQKDL QEKFRANACG MLSCHTVERL IEIVENLEDL ENSTTRP00000001335/1-477 TERSDTFYGH WRKPLSQKDL QEKFRANACR MLSCHTVERL IEIVENLEDL 451 500 ENSP00000366682/1-481 EDCSVLTTLL KGPSPPEVAS NSPACNNSIT NLS ENSBTAP00000010869/1-470 EDCSVLTTLL KETSPPKIAS KS-------- --- bmy_04026T0/1-453 EDCSVLTTLL KEPSPPEIVT KSL------- --- BACU011830/1-467 EDCSVLTTLL KEPSPPEIVT KSL------- --- ENSTTRP00000001335/1-477 EDCSVLTALL KEPSPPEIVS NSLAFNSSIM NLS