KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:25 2014 Check: 00 .. Name: ENSBTAP00000010907/1-1010 Len: 1019 Check: 8694 Weight: 1.00 Name: ENSP00000307858/1-1013 Len: 1019 Check: 2923 Weight: 1.00 Name: ENSTTRP00000013525/1-929 Len: 1019 Check: 6045 Weight: 1.00 Name: BACU001236/1-939 Len: 1019 Check: 3627 Weight: 1.00 Name: bmy_01744T0/1-896 Len: 1019 Check: 5434 Weight: 1.00 // 1 50 ENSBTAP00000010907/1-1010 AMPPPAEVTD PSHAPAALRQ LNEQRLRGLF CDVTLIAGDT KFPAHRSVLA ENSP00000307858/1-1013 -MPPPAEVTD PSHAPAVLRQ LNEQRLRGLF CDVTLIAGDT KFPAHRSVLA ENSTTRP00000013525/1-929 -MPPPAEVTD PSHAPAVLRQ LNEQRLRGLF CDVTLIAGDT KFPAHRSVLA BACU001236/1-939 -MPPPAEVTD PSHAPAVLRQ LNEQRLRGLF CDVTLIAGDT KFPAHRSVLA bmy_01744T0/1-896 -MPPPAEVTD PSHAPAVLRQ LNEQRLRGLF CDVTLIAGDT KFPAHRSVLA 51 100 ENSBTAP00000010907/1-1010 ASSPFFREAL LASAPLPLPP ITGGSAPNPT TTTAASSSSS SSSSSS---- ENSP00000307858/1-1013 ASSPFFREAL LTSAPLPLPP ATGGAAPNPA TTTAASSSSS SSSSSSSSSS ENSTTRP00000013525/1-929 ASSPFFREAL LASAPLPLPP ITGGSAPNPA STTA------ ---------- BACU001236/1-939 ASSPFFREAL LASAPLPLPP ITGGSAPNPA STTASSSSSS SSSSSS---- bmy_01744T0/1-896 ASSPFFREAL LASAPLPLPP ITGGSAPNPA STTASSSSSS SSSSSSS--- 101 150 ENSBTAP00000010907/1-1010 --SSSSSSSS SSPSPASPSA SSPPRVLELP GVPAAAFSDV LNFIYSARLA ENSP00000307858/1-1013 SASSSSSSSS SSPPPASPPA SSPPRVLELP GVPAAAFSDV LNFIYSARLA ENSTTRP00000013525/1-929 --SSSSSSSS SSPPPPT--- ---------- ---------- ---------- BACU001236/1-939 --SSSSSSSS SSPPPPSPPA SSPPRVLELP GVPAAAFSDV LNFIYSARLA bmy_01744T0/1-896 --SSSSSSSS SSPPPPSPPA SSPPRVLELP GVPAAAFSDV LNFIYSARLA 151 200 ENSBTAP00000010907/1-1010 LPGGGGDGAA VAEIGALGRR LGISRLQGLG EGGDAWVPPA PVPMATSQPE ENSP00000307858/1-1013 LPGGGGDGAA VAEIGALGRR LGISRLQGLG EGGDAWVPPT PAPMATSQPE ENSTTRP00000013525/1-929 ---------- ---------- ---SXLQGLG EGGDAWAPPA PSPMATSQPE BACU001236/1-939 LPGGGGDGAA VAEIGALGRR LGISRLQGLG EGGDAWVPPA PAPMATSQPE bmy_01744T0/1-896 LPGGGGDGAA VAEIGALGRR LGISRLQGLG EGGDAWVPPA PAPMATSQPE 201 250 ENSBTAP00000010907/1-1010 EDSFGPGPRP AGEWEGDRAE AQGPDSQPAL SRRPLPCPRC GKSFIHPKRL ENSP00000307858/1-1013 EDSFGPGPRP AGEWEGDRAE AQAPDLQCSL PRRPLPCPQC GKSFIHPKRL ENSTTRP00000013525/1-929 EDNFGPGPRP AGEWEGDRAE AQAPDSQPPL PRRPLPCP-C GKSFIHPKRL BACU001236/1-939 EDNFGPGPRP AGEWEGDRAE AQAPDSQPPL PRRPLPCPRC GKSFIHPKRL bmy_01744T0/1-896 EDNFGPGPRP AGEWEGDRAE AQAPDSQPPL PRRPLPCPRC GKSFIHPKRL 251 300 ENSBTAP00000010907/1-1010 QTHEAQCRRE ASARGSAGLG ARGSVPSGPA GVDASALPPA VGFRGGPEHV ENSP00000307858/1-1013 QTHEAQCRRG ASTRGSTGLG AGGAGPGGPA GVDASALPPP VGFRGGPEHV ENSTTRP00000013525/1-929 QTHEAQCRRG ASTRGSAGLG AGGSGPSGPS GVDASALPPP VGFRGGPEHV BACU001236/1-939 QTHEAQCRRG ASTRGSAGLG AGGSGPSGPS GVDASALPPP VGFRGGPEHV bmy_01744T0/1-896 QTHEAQCRRG ASTRGSAGLG AGGSGPSGPS GVDASALPPP VGFRGGPEHV 301 350 ENSBTAP00000010907/1-1010 VKVVGGHVLY VCAACERSYV TLSSLKRHSN VHSWRRKYPC RYCEKVFALA ENSP00000307858/1-1013 VKVVGGHVLY VCAACERSYV TLSSLKRHSN VHSWRRKYPC RYCEKVFALA ENSTTRP00000013525/1-929 VKVVGGHVLY VCAACERSYV TLSSLKRHSN VHSWRRKYPC RYCEKVFALA BACU001236/1-939 VKVVGGHVLY VCAACERSYV TLSSLKRHSN VHSWRRKYPC RYCEKVFALA bmy_01744T0/1-896 VKVVGGHVLY VCAACERSYV TLSSLKRHSN VHSWRRKYPC RYCEKVFALA 351 400 ENSBTAP00000010907/1-1010 EYRTKHEVWH TGERRYQCIF CWETFVTYYN LKTHQRAFHG ISPSLLASEK ENSP00000307858/1-1013 EYRTKHEVWH TGERRYQCIF CWETFVTYYN LKTHQRAFHG ISPGLLASEK ENSTTRP00000013525/1-929 EYRTKHEVWH TGERRYQCIF CWETFVTYYN LKTHQRAFHG ISPGLLASEK BACU001236/1-939 EYRTKHEVWH TGERRYQCIF CWETFVTYYN LKTHQRAFHG ISPGLLASEK bmy_01744T0/1-896 EYRTKHEVWH TGERRYQCIF CWETFVTYYN LKTHQRAFHG ISPGLLASEK 401 450 ENSBTAP00000010907/1-1010 TPNGGYKPKL NTLKLYRLLP MRAAKRPYKT YSQGAPEAPL SPSLNTAAPV ENSP00000307858/1-1013 TPNGGYKPKL NTLKLYRLLP MRAAKRPYKT YSQGAPEAPL SPTLNTPAPV ENSTTRP00000013525/1-929 TPNGGYKPKL NTLKLYRLLP MRAAKRPYKT YSQGAPEAPL SPSLNTPAPA BACU001236/1-939 TPNGGYKPKL NTLKLYRLLP MRAAKRPYKT YSQGAPEAPL SPSLNTP--- bmy_01744T0/1-896 TPNGGYKPKL NTLKLYRLLP MRAAKRPYKT YSQGAPEAPL SPSLNTPAPA 451 500 ENSBTAP00000010907/1-1010 AMPASSPPGP APAPEPGPPP SVITFAHPAP SVIVHGGSSS GGAGSGPAST ENSP00000307858/1-1013 AMPASPPPGP PPAPEPGPPP SVITFAHPAP SVIVHGGSSS GGGGSGTAST ENSTTRP00000013525/1-929 AMPASPPPGP PPAPEPGPPP SVITFAXXXX XX-XXXXXXX XXXXXXXXXX BACU001236/1-939 ---------- ---------- ---------- ---VHGGSSS GGAGSGEAST bmy_01744T0/1-896 AMPASPPPGP PPAPEPGPPP SVITFAHPAP SVIVHGGSSS GGAGSGPAST 501 550 ENSBTAP00000010907/1-1010 GGAQAASVIT YTAPPRPPKK REYPPPPPEP AAAPTSPATA GSPATAAGP- ENSP00000307858/1-1013 GGSQAASVIT YTAPPRPPKK REYPPPPPEP AATPTSPATA VSPATAAGPA ENSTTRP00000013525/1-929 XXXXXASVIT YART--PPKK REYPPPPPV- AAAPTSPAPA GSPATA---- BACU001236/1-939 GGAQAASVIT YTAPPRPPKK REYPPPPPVP AAAPASPAPA GSPATA---- bmy_01744T0/1-896 GGAQAASVIT YTAPPRPPKK REYPPPPPVP AAAPASPAPA GSPATA---- 551 600 ENSBTAP00000010907/1-1010 -ATAMEEAKG RNPRATRTLT YTAKPAGGIG GGAGPPAGPG RGPSQLQAPP ENSP00000307858/1-1013 MATTTEEAKG RNPRAGRTLT YTAKPVGGIG GGGGPPTGAG RGPSQLQAPP ENSTTRP00000013525/1-929 ----TEEAKG RNPRATRTLT YTAKPAGGLG GGGGPPAGPG RGPSQLQAPP BACU001236/1-939 ----TEEAKG RNPRATRTLT YTAKPAGGLG GGG------- -GPSQLQAPP bmy_01744T0/1-896 ----TEEAKG RNPRATRTLT YTAKPAG--- ---------- ---------- 601 650 ENSBTAP00000010907/1-1010 PLCQITVRIG EEAIVKRRIS ETDLRPGELS GEEMEESEEE EEDEEEEEEE ENSP00000307858/1-1013 PLCQITVRIG EEAIVKRRIS ETDLRPGELS GEEMEESEED EEEEDEEEEE ENSTTRP00000013525/1-929 PLCQITVRIG EEAIVKRRIS ETDLRPGELS GEEMEESEEE DEEEDEEEDE BACU001236/1-939 PLCQITVRIG EEAIVKRRIS ETDLRPGELS GEEMEESEEE EEEEEEEEEE bmy_01744T0/1-896 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000010907/1-1010 EE-EGQGESK AGGEDQLWRP YYSYKPKRKA GAVAPASSGG SGMPRSRRPP ENSP00000307858/1-1013 ED---EEESK AGGEDQLWRP YYSYKPKRKA GAAGGASVGG SGLPRGRRPP ENSTTRP00000013525/1-929 EDEEDEEESK AGGEDQLWRP YYSYKPKRKA GAAGPGSSGG GGMPRGRRPP BACU001236/1-939 EEDEEEEESK AGGEDQLWRP YYSYKPKRKA GAAGPGSSGG GGMPRGRRPP bmy_01744T0/1-896 ---------- ---------- ---------- ----PGSSGG GGMPRGRRPP 701 750 ENSBTAP00000010907/1-1010 RWRQKLERRS WEETPAADGP TGRARGERRH RCEDCAQTFA SLRKLRKHQE ENSP00000307858/1-1013 RWRQKLERRS WEETPAAESP AGRARTERRH RCGDCAQTFT TLRKLRKHQE ENSTTRP00000013525/1-929 RWRQKLERRS WEETPAAEGP AGRARGERRH RCGDCAQTFA TLRKLRKHQE BACU001236/1-939 HWR------- ---------- --RARGERRH RCGDCAQTFA TLRKLRKHQE bmy_01744T0/1-896 RWRQKLERRS WEETPAAESP AGRARGERRH RCGDCAQTFA TLRKLRKHQE 751 800 ENSBTAP00000010907/1-1010 SHSGGPHSSR SGRKPSTRLT CPHCAKVCKT AAALSRHGQR HAAERPGGTP ENSP00000307858/1-1013 AHGGGSHSSR AGRRPSTRFT CPHCAKVCKT AAALSRHGQR HAAERPGGTP ENSTTRP00000013525/1-929 AHGGGSHNSR AGRKPSTRFA CPHCAKVCKT AAALSRHGQR HAAERPGGTP BACU001236/1-939 AHGGGSHNSR AGRKPSTRFA CPHCAKVCKT AAALSRHGQR HAAERPGGTP bmy_01744T0/1-896 AHGGGSHNSR AGRKPSTRFA CPHCAKVCKT AAALSRHGQR HAAERPGGTP 801 850 ENSBTAP00000010907/1-1010 TPVIAYSKGS TGARAGEIKE EAPQEMQVSS SSGEAGGGGG SAPAEEASEP ENSP00000307858/1-1013 TPVIAYSKGS AGTRPGDVKE EAPQEMQVSS SSGEAG--GG STAAEEASET ENSTTRP00000013525/1-929 TPVIAYSKGC VGTRAGDVKE EAPQEMQVSS SSGEAG--GG SAAAEEASKT BACU001236/1-939 TPVIAYSKGC AGTRAGDVKE EAPQEMQVSS SSGEAG--GG SAAAEEASKT bmy_01744T0/1-896 TPVIAYSKGC AGTRAGDVKE EAPQEMQVSS SSGEAG--GG SAAAEEASKT 851 900 ENSBTAP00000010907/1-1010 ASLQDPVISG GEEPSVGAGG ATYAYPPVQE FPLALIGSGR ESGSGRGKGG ENSP00000307858/1-1013 ASLQDPIISG GEEPPVVASG GSYVYPPVQE FPLALIGGGR EPGGGRGKSG ENSTTRP00000013525/1-929 ASLQDPVISG GEEPSVVAGG GTYAYPPVQE FPLALIGSGR ESGSGRGKAG BACU001236/1-939 ASLQDPVISG GEEPSVVAGG GTYAYPPVQE FPLALIGSGR ESGSGRGKAG bmy_01744T0/1-896 ASLQDPVISG GEEPSVVAGG GTYAYPPVQE FPLALIGSGR ESGSGRGKAG 901 950 ENSBTAP00000010907/1-1010 SEGPGGAGGG DRMEAMGAAK VTFYPEPYPL VYGPQLLAAY PYNFSNLAAL ENSP00000307858/1-1013 SEGPVGAGEG DRMEGIGAAK VTFYPEPYPL VYGPQLLAAY PYNFSNLAAL ENSTTRP00000013525/1-929 SEGPVGAGRG DRMEGMGAAK VTFYPEPYPL VYGPQLLAAY PYNFSNLAAL BACU001236/1-939 SEGPVGAGRG DRMEGMGAAK VTFYPEPYPL VYGPQLLAAY PYNFSNLAAL bmy_01744T0/1-896 SEGPVGAGRG DRMEGMGAAK VTFYPEPYPL VYGPQLLAAY PYNFSNLAAL 951 1000 ENSBTAP00000010907/1-1010 PVALNMVLPD EKGGGALPFL PGVFGYAVNP QAAAPTPPTP PPPTLPPPVA ENSP00000307858/1-1013 PVALNMVLPD EKGAGALPFL PGVFGYAVNP QAAPPAPPTP PPPTLPPPIP ENSTTRP00000013525/1-929 PVALNMVLPD EKGGGALPFL PGVFGYPVNP QAAPPTPPTP PPPTLPPPVP BACU001236/1-939 PVALNMVLPD EKGGGALPFL PGVFGYAVNP QAAPPTPPTP PPPTLPPPVP bmy_01744T0/1-896 PVALNMVLPD EKGGGALPFL PGVFGYAVNP QAAPPTPPTP PPPTLPPPVP 1001 1050 ENSBTAP00000010907/1-1010 PKGEGERAGV ERTQKGDVG ENSP00000307858/1-1013 PKGEGERAGV ERTQKGDVG ENSTTRP00000013525/1-929 PKGEGERAGV ERTQKGDVG BACU001236/1-939 PKGEGERAGV QRTQKGDVG bmy_01744T0/1-896 PKGEGERAGV ERTQKGDVG