KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:26 2014 Check: 00 .. Name: BACU014763/1-628 Len: 756 Check: 1156 Weight: 1.00 Name: ENSTTRP00000004598/1-672 Len: 756 Check: 798 Weight: 1.00 Name: bmy_14752T0/1-704 Len: 756 Check: 1654 Weight: 1.00 Name: ENSP00000368305/1-672 Len: 756 Check: 8473 Weight: 1.00 Name: ENSBTAP00000010913/1-674 Len: 756 Check: 8792 Weight: 1.00 // 1 50 BACU014763/1-628 MGRVPQ---- --PG-----R DLPVG----- ---------- ---------- ENSTTRP00000004598/1-672 --MTPSQVTF EIRG-----A LLP------- ---------- ---------- bmy_14752T0/1-704 --MNPGQVSA AAPGQQKTKR RVPQGGPATL GHGRRPFPGT RGPAPRTRPP ENSP00000368305/1-672 --MTPSQVAF EIRG-----T LLP------- ---------- ---------- ENSBTAP00000010913/1-674 IRMTPSQVTF EIRG-----T LLP------- ---------- ---------- 51 100 BACU014763/1-628 ---------- ---------- --------ET AAWTFAPLLG SYCLSSWNIS ENSTTRP00000004598/1-672 ---------- ---------- ---------- ---------- ---------- bmy_14752T0/1-704 IAAWGSAGEA RTAGARHLGP RHWLSGAASV AARTRGPGRF FWSIHSYRI- ENSP00000368305/1-672 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000010913/1-674 ---------- ---------- ---------- ---------- ---------- 101 150 BACU014763/1-628 GEVFAICGSS DALGNWNPQN AVALLTENET GESMLWKATI VLSRGVSVQY ENSTTRP00000004598/1-672 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXMLWKATI VLSRGVSVQY bmy_14752T0/1-704 GEVFAICGSS DALGNWNPQN AVALLPENET GESMLWKATI VLSRGVSVQY ENSP00000368305/1-672 GEVFAICGSC DALGNWNPQN AVALLPENDT GESMLWKATI VLSRGVSVQY ENSBTAP00000010913/1-674 GEVFAICGSC DALGNWNPQK AVALLPENET GESMLWKATI VLSRGVSVQY 151 200 BACU014763/1-628 RYFKGCFLEP KV-------- ---------- ---------- ---SSEYALR ENSTTRP00000004598/1-672 RYFKGCFLEP KTIGGPCQVI VHKWETHLQP RSITPLESEI IIDDGQFGIH bmy_14752T0/1-704 RYFKGCFLEP KTIGGPCQVI VHKWETHLQP RSITPLESEI IIDDGQFGIH ENSP00000368305/1-672 RYFKGYFLEP KTIGGPCQVI VHKWETHLQP RSITPLESEI IIDDGQFGIH ENSBTAP00000010913/1-674 RYFKGCFLEP KTIGGPCQVI VHKWETHLQP RSITPLESEI IIDDGQFGIH 201 250 BACU014763/1-628 K------NKH FNCAKTFGLK -----NQPGD IVVQQLVSLI HWVKLTLEGL ENSTTRP00000004598/1-672 NGVETLDSGW LTCQTEIRLR LHYSEKPPVS ITKKKLKKSR FRVKLTLEGL bmy_14752T0/1-704 NGVETLDSGW LTCQTEIRLR LHYSEKPPVS ITKKKFKKSR FRVKLTLEGP ENSP00000368305/1-672 NGVETLDSGW LTCQTEIRLR LHYSEKPPVS ITKKKLKKSR FRVKLTLEGL ENSBTAP00000010913/1-674 NGIETLDSGW LTCQTEIRLR LHYSEKPPVS ITKKKFKKSR FRVKLTLEGL 251 300 BACU014763/1-628 EEDDDDRVSP TLLHKMSNTL EISLISDNEF KCRHSQPECG YGLQPDRWTE ENSTTRP00000004598/1-672 EEDDDDRVSP TVLHKMSNSL EISLISDNEF KCRHSQPECG YGLQPDRWTE bmy_14752T0/1-704 EEDDDDRVSP TLLHKMSNTL EISLISDNEF KCRHSQPECG YGLQPDRWTE ENSP00000368305/1-672 EEDDDDRVSP TVLHKMSNSL EISLISDNEF KCRHSQPECG YGLQPDRWTE ENSBTAP00000010913/1-674 EEDDDDRVSP TVLHKMSNSL EISLISDNEF KCRHSQPECG YGLQPDRWTE 301 350 BACU014763/1-628 YSIQTMEPDN LELIFDFFEE DLSEHIVQGD ALPGHVGAAC LLSSTIAESG ENSTTRP00000004598/1-672 YSIQTMEPDN LELIFDFFEE DLSEHIVQGD TLPGHVGTAC LLSSTIAESG bmy_14752T0/1-704 YSIQTMEPDN LELIFDFFEE DLSEHIVQGD ALPGHVGTAC LLSSTIAESG ENSP00000368305/1-672 YSIQTMEPDN LELIFDFFEE DLSEHVVQGD ALPGHVGTAC LLSSTIAESG ENSBTAP00000010913/1-674 YSIQTMEPDN LELIFDFFEE DLSEHVVQGD AFPGHVGTAC LLSSTIAESG 351 400 BACU014763/1-628 KSAGILTLPI MSRNSRKTIG KVRVDYIIIK PLPGYNCDMK SSFSKYWKPR ENSTTRP00000004598/1-672 KSAGILTLPI MSRNSRKTIG KVRVDYIIIK PLPGYNCDMK SSFSKYWKPR bmy_14752T0/1-704 KSAGILTLPI MSRNSRKTIG KVRVDYIIIK PLPGYNCDMK SSFSKYWKPR ENSP00000368305/1-672 KSAGILTLPI MSRNSRKTIG KVRVDYIIIK PLPGYSCDMK SSFSKYWKPR ENSBTAP00000010913/1-674 KSAGILTLPI MSRNSRKTIG KVRVDYIIIK PLPGYSCDMK SSFSKYWKPR 401 450 BACU014763/1-628 IPLDVGHRGA GNSTTTAQLA KVQENTIASL RNAASHGAAF VEFDVHLSKD ENSTTRP00000004598/1-672 IPLDVGHRGA GNSTTTAQLA KVQENTIASL RNAASHGAAF VEFDVHLSKD bmy_14752T0/1-704 IPLDVGHRGA GNSTTTAQLA KVQENTIASL RNAASHGAAF VEFDVHLSKD ENSP00000368305/1-672 IPLDVGHRGA GNSTTTAQLA KVQENTIASL RNAASHGAAF VEFDVHLSKD ENSBTAP00000010913/1-674 IPLDVGHRGA GNSTTTAQLA KVQENTIASL RNAASHGAAF VEFDVHLSKD 451 500 BACU014763/1-628 FVPVVYHDLT CCLTMKKKFD ADPVELFEIP VKELTFDQLQ LLKLTHVTAL ENSTTRP00000004598/1-672 FVPVVYHDLT CCLTMKKKFD ADPVELFEIP VKELTFDQLQ LLKLTHVTAL bmy_14752T0/1-704 FVPVVYHDLT CCLTMKKKFD ADPVELFEIP VKELTFDQLQ LLKLTHVTAL ENSP00000368305/1-672 FVPVVYHDLT CCLTMKKKFD ADPVELFEIP VKELTFDQLQ LLKLTHVTAL ENSBTAP00000010913/1-674 FVPVVYHDLT CCLTMKKKFD ADPVELFEIP VKELTFDQLQ LLKLTHVTAL 501 550 BACU014763/1-628 KSKELKESVV EEENSFSENQ PFPSLKM--- ---------- ---------D ENSTTRP00000004598/1-672 KSKELKESVV EEENSFSENQ PFPSLKMVLE SLPEDVGFNI EIKWICQQRD bmy_14752T0/1-704 KSKELKESVV EEENSFSENQ PFPSLKMVLE SLPEDVGFNI EIKWICQQR- ENSP00000368305/1-672 KSKDRKESVV QEENSFSENQ PFPSLKMVLE SLPEDVGFNI EIKWICQQRD ENSBTAP00000010913/1-674 KSKDLKESMV EEENSFSENQ PFPSLKMVLE SLPEDVGFNI EIKWICQQRD 551 600 BACU014763/1-628 GIWDGNLSTY FDMNLFLDII LKTVLENSGK RRIVFSSFDA DICTMVRQKQ ENSTTRP00000004598/1-672 GIWDGNLSTY FDMNLFLDII LKTVLENSGK RRIVFSSFDA DICTMVRQKQ bmy_14752T0/1-704 ---------- ---------- ---------- RRIVFSSFDA DICTMVRQKQ ENSP00000368305/1-672 GMWDGNLSTY FDMNLFLDII LKTVLENSGK RRIVFSSFDA DICTMVRQKQ ENSBTAP00000010913/1-674 GMWDGNLSTY FDMNLFLDII LKTVLENSGK RRIVFSSFDA DICTMVRQKQ 601 650 BACU014763/1-628 NKYPILFLTQ GKSDIYPELM DLRSRTTPIA MSFAQFENLL GINAHTEDLL ENSTTRP00000004598/1-672 NKYPILFLTQ GKSDIYPELM DLRSRTTPIA MSFAQFENLL GINAHTEDLL bmy_14752T0/1-704 NKYPILFLTQ GKSDIYPELM DLRSRTTPIA MSFAQFENLL ---------- ENSP00000368305/1-672 NKYPILFLTQ GKSEIYPELM DLRSRTTPIA MSFAQFENLL GINVHTEDLL ENSBTAP00000010913/1-674 NKYPILFLTQ GKSDIYPELM DLRSRTTPIA MSFAQFENLL GINAHTEDLL 651 700 BACU014763/1-628 RNPSYIHEAK AKGLVIFCWG DDTNDPENRK KLKEFGVNGL IYDRIYDWMP ENSTTRP00000004598/1-672 RNPSYIQEAK AKGLVIFCWG DDTNDPENRK KLKEFGVNGL IYDRIYDWMP bmy_14752T0/1-704 --------AK AKGLVIFCWG DDTNDPENRK KLKEFGVNGL IYDRIYDWMP ENSP00000368305/1-672 RNPSYIQEAK AKGLVIFCWG DDTNDPENRR KLKELGVNGL IYDRIYDWMP ENSBTAP00000010913/1-674 RNPSYIQEAK AKGLVIFCWG DDTNDPENRK KLKEFGVNGL IYDRIYDWMP 701 750 BACU014763/1-628 EQPNIFQVEQ LERLKQELPE LKSCLCPTVS RFVPSSFCGE PDIHVDANGI ENSTTRP00000004598/1-672 EQPNIFQVEQ LERLKQELPE LKSCLCPTVS RFVPSSFCGE PDIHVDANGI bmy_14752T0/1-704 EQPNIFQVEQ LERLKQELPE LKSCLCPTVS RFVPSSFCGE PDIHVDANGI ENSP00000368305/1-672 EQPNIFQVEQ LERLKQELPE LKSCLCPTVS RFVPSSLCGE SDIHVDANGI ENSBTAP00000010913/1-674 EQPNIFQVEQ LERLKQELPE LKSCLCPTVS RFVPSSLCGE PDIHVDANGI 751 800 BACU014763/1-628 DNVENA ENSTTRP00000004598/1-672 DNVENA bmy_14752T0/1-704 DNVENA ENSP00000368305/1-672 DNVENA ENSBTAP00000010913/1-674 DNVESA