KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:35 2014 Check: 00 .. Name: ENSTTRP00000014731/1-1168 Len: 1326 Check: 407 Weight: 1.00 Name: ENSBTAP00000010946/1-1171 Len: 1326 Check: 4475 Weight: 1.00 Name: ENSP00000327214/1-1180 Len: 1326 Check: 9179 Weight: 1.00 Name: bmy_08215T0/1-1023 Len: 1326 Check: 6850 Weight: 1.00 Name: BACU005692/1-1320 Len: 1326 Check: 5101 Weight: 1.00 // 1 50 ENSTTRP00000014731/1-1168 MSADS----- ---------- ----SPLVGN TP---AGYGT LTIETSIDPL ENSBTAP00000010946/1-1171 MSADS----- ---------- ----SPLVGS TP---AGYGT LTIETSTDPL ENSP00000327214/1-1180 MSADS----- ---------- ----SPLVGS TP---TGYGT LTIGTSIDPL bmy_08215T0/1-1023 MSADS----- ---------- ----SPLVGS TP---AGYGT LTIETSIDPL BACU005692/1-1320 MVLDALIKIK NEIDSTLTFR RSCREGICGS CAMNINGGNT LACTRRIDTN 51 100 ENSTTRP00000014731/1-1168 SSSVSSV--- ---------- ---------- ---------- ---------- ENSBTAP00000010946/1-1171 SSSVSSV--- ---------- ---------- ---------- ---------- ENSP00000327214/1-1180 SSSVSSV--- ---------- ---------- ---------- ---------- bmy_08215T0/1-1023 SSSVSSV--- ---------- ---------- ---------- ---------- BACU005692/1-1320 LNKVSKIYPL PHMYVIKDLV PDLSNFYAQY KSIEPYLKKK DESQEGKEQY 101 150 ENSTTRP00000014731/1-1168 --------RL SGY------- -----CGSPW ----RVIGYI VV-----WVM ENSBTAP00000010946/1-1171 --------RL SGY------- -----CGSPW ----RAIGYH AVV----WML ENSP00000327214/1-1180 --------RL SGY------- -----CGSPW ----RVIGYH VVV----WMM bmy_08215T0/1-1023 --------RL SGY------- -----CGSPW ----RVIGYH IVV----WMM BACU005692/1-1320 LQSIEDREKL DGLYECILCA CCSTSCPSYW WNGDKYLGPA VLMQAYRWMI 151 200 ENSTTRP00000014731/1-1168 AGI------- ------PLLL FRWKPMW--- ---------- ----RVRLRL ENSBTAP00000010946/1-1171 AGL------- ------PLLL FRWKPLW--- ---------- ----GVRLRL ENSP00000327214/1-1180 AGI------- ------PLLL FRWKPLW--- ---------- ----GVRLRL bmy_08215T0/1-1023 AGI------- ------PLLL FRWKPVW--- ---------- ----RVRLRL BACU005692/1-1320 DSRDDFTEER LAKLQDPFSL YRCHTIMNCT NTCPKKPPEK SPKGGETTRP 201 250 ENSTTRP00000014731/1-1168 QPC--SLAHA E--------- ----TLVIEI R--------D KEDSSWQLYT ENSBTAP00000010946/1-1171 RPC--TLAHA E--------- ----TLVIET R--------D REDSSWQLCT ENSP00000327214/1-1180 RPC--NLAHA E--------- ----TLVIEI R--------D KEDSSWQLFT bmy_08215T0/1-1023 QPC--SLARA E--------- ----TLVIEI R--------D KEDSSWQLYT BACU005692/1-1320 DPLKEQVSRA DSSPLVGNTP AGYGTLTIET SIDPLSSSVS SVDSSWQLYT 251 300 ENSTTRP00000014731/1-1168 VQVQTEAISK DSLELPPQTQ AEDGRSQAAV GTLPEGTWKD TARLHRTEEA ENSBTAP00000010946/1-1171 VQVQTEAIGA DGLQPPPQMR AEDGRSRAAV GAEPEDAWKD TAQLHRPEE- ENSP00000327214/1-1180 VQVQTEAIGE GSLEPSPQSQ AEDGRSQAAV GAVPEGAWKD TAQLHKSEEA bmy_08215T0/1-1023 VQVQTEAISK DSLELPPQTQ AEDGRSQAAV GTLPEGTWKD TTQLHRTEEA BACU005692/1-1320 VQVQTEAISK DSLELPPQTQ AEDGRSQAAV GTLPEGTWKD TAQLHRTEEA 301 350 ENSTTRP00000014731/1-1168 VS-GQQRTLR YYLFRGQRYV WIETQQAFCR VSLLDHGRTC DDLHCSSTGL ENSBTAP00000010946/1-1171 -----RRRLR YYVFRGQRYV WMETQQAFRQ VSLLDRSRTC DDLRRASAGL ENSP00000327214/1-1180 VSVGQKRVLR YYLFQGQRYI WIETQQAFYQ VSLLDHGRSC DDVHRSRHGL bmy_08215T0/1-1023 -----QRTLR YYLFRGQRYV WIETQQAFCR VSLLDHGRTC DDLHCSSTGL BACU005692/1-1320 -----QRTLR YYLFRGQRYV WIETQQAFCR VSLLDHGRTC DDLHCSSTGL 351 400 ENSTTRP00000014731/1-1168 SLQDQTVRKT IYGPNVISVP VKSYPQLLVD EALNPYYGFQ AFSIGLWLAD ENSBTAP00000010946/1-1171 GLQDHTVRKA VYGPNVISVP VKSYPQLLVD EALNPYYGFQ AFSIVLWLAD ENSP00000327214/1-1180 SLQDQMVRKA IYGPNVISIP VKSYPQLLVD EALNPYYGFQ AFSIALWLAD bmy_08215T0/1-1023 SLQDQTMRKT VYGPNVISVP VKSYPQLLVD EALNPYYGFQ AFSIGLWLAD BACU005692/1-1320 SLQDQTVRKT IYGPNVISVP VKSYPQLLVD EALNPYYGFQ AFSIGLWLAD 401 450 ENSTTRP00000014731/1-1168 YYYWYALCIF LISIVSLCVS IYKTRKQSQT LRDMVQLSVQ VCVCRPGGEE ENSBTAP00000010946/1-1171 HYYWYALCIL LVSAVSICLS VYRTRKQSQT LRDMVQLSVR VCVCRPEG-E ENSP00000327214/1-1180 HYYWYALCIF LISSISICLS LYKTRKQSQT LRDMVKLSMR VCVCRPGGEE bmy_08215T0/1-1023 YYYWYALCIF LISIISICVS IYKTRKQSQT LRDMVQLSVR VCVCRPGGEE BACU005692/1-1320 YYYWYALCIF LISVVSICVS IYKTRKQSQT LRDMVQLSVR VCVCRPGGEE 451 500 ENSTTRP00000014731/1-1168 EWVDSSELVP GDCLVLPQEG GLMPCDAALV AGECMVNESS LTGESVPVLK ENSBTAP00000010946/1-1171 EWVDSSELVP GDCLVLPQEG GLMPCDAALV AGECVVNESS LTGESIPVLK ENSP00000327214/1-1180 EWVDSSELVP GDCLVLPQEG GLMPCDAALV AGECMVNESS LTGESIPVLK bmy_08215T0/1-1023 EWVDSSELVP GDCLVLPQEG GLMPCDAALV AGECMVNESS LTGESVPVLK BACU005692/1-1320 EWVDSSELVP GDCLVLPQEG GLMPCDAALV AGECMVNESS LTGESVPVLK 501 550 ENSTTRP00000014731/1-1168 TALPEGPVPY FPETHQRHTL FCGTLILQAR AFVGPHALAV VTQTXXXXXX ENSBTAP00000010946/1-1171 TALPEGPAPY LPETHRRHTL FCGTLVLQAR AFVGPHVLAV VTQTGFCTAK ENSP00000327214/1-1180 TALPEGLGPY CAETHRRHTL FCGTLILQAR AYVGPHVLAV VTRTGFCTAK bmy_08215T0/1-1023 TALPEGPVPY LPETHQRHTL FCGTLILQAR ASVGPHVLAV VTQTGFCTAK BACU005692/1-1320 TVLPEGPVPY FPETHQRHTL FCGTLILQAR ASVGPHVLAV VTQTGFCTAK 551 600 ENSTTRP00000014731/1-1168 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000010946/1-1171 GGLVSSILHP RPLSFKFYKH SMKFVAALSV VALLGTVYSI IILLHNQVPL ENSP00000327214/1-1180 GGLVSSILHP RPINFKFYKH SMKFVAALSV LALLGTIYSI FILYRNRVPL bmy_08215T0/1-1023 GALVSSILHP RPINFKFYKH SVKFVAALSV LALLGTVYSI FILHRNQVPV BACU005692/1-1320 GALVSSILHP RPISFKFYKH SVKFVAALSV LALLGTIYSI FILHRNQVPV 601 650 ENSTTRP00000014731/1-1168 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000010946/1-1171 GEIVIRALDV VTVAVPPALP AAMTMCALYA QSRLESQGIF CVHPARINLA ENSP00000327214/1-1180 NEIVIRALDL VTVVVPPALP AAMTVCTLYA QSRLRRQGIF CIHPLRINLG bmy_08215T0/1-1023 DEIVIRALDL VTVAVPPALP AAMTVCTLYA QSRLRSQGIF CIHPMRINLG BACU005692/1-1320 DEIVIRALDL VTVAVPPALP AAMTVCTLYA QSRLRSQGIF CIHPMRINLG 651 700 ENSTTRP00000014731/1-1168 XXXXXXXXXX TGTLTEDGLD VMGVVPLKGQ EFLPLVPEPR RLPMGPLLRA ENSBTAP00000010946/1-1171 GKLRLVCFDK TGTLTEDGLD VMGVVPLKGQ EFLPLVSEPR RLPMGPLLRA ENSP00000327214/1-1180 GKLQLVCFDK TGTLTEDGLD VMGVVPLKGQ AFLPLVPEPR RLPVGPLLRA bmy_08215T0/1-1023 GKLRLVCFDK TGTLTEDGLD VMGVVPLKGQ EFLPLVPEPR RLPMGPLLRA BACU005692/1-1320 GKLRLVCFDK TGTLTEDGLD VMGVVPLKGQ EFLPLVPEPR RLPMGPLLRA 701 750 ENSTTRP00000014731/1-1168 LATCHTLSRL RDTPVGDPMD LKMVESTGWV LEEGSAADST FGTQVLAVMK ENSBTAP00000010946/1-1171 LATCHTLSRL QDTPVGDPMD LKMVESTGWV LEEGPVTDST FGTQVLAVMK ENSP00000327214/1-1180 LATCHALSRL QDTPVGDPMD LKMVESTGWV LEEEPAADSA FGTQVLAVMR bmy_08215T0/1-1023 LATCHTLSRL RDTPVGDPMD LKMVESTGWV LEEGPAVDST FGTQVLAVMK BACU005692/1-1320 LATCHTLSRL QDTPVGDPMD LKMVESTGWV LEEGPAADST FGTQVLAVMR 751 800 ENSTTRP00000014731/1-1168 PPLQELHLQG MEEPLVPVSI LSHFPFSSAL QRMSVVVAWP GAARPEACVK ENSBTAP00000010946/1-1171 PPLQEPHLQG ME-PPAPVSI LGRFPFLSAL QRMSVVVAWP GAAQPEACVK ENSP00000327214/1-1180 PPLWEPQLQA MEEPPVPVSV LHRFPFSSAL QRMSVVVAWP GATQPEAYVK bmy_08215T0/1-1023 PPLQELHLQG MEEPLVPVSI LSHFPFSSAL QRMSVVVAWP GAARPEACVK BACU005692/1-1320 PPLQELHLQG MEEPRVPVSI LSHFPFSSAL QRMSVVVAWP GAARPEACVK 801 850 ENSTTRP00000014731/1-1168 GSPELVAGLC DPKTVPTDFS QMLQSYTAAG YRVVALASKP LPIAPNMEAA ENSBTAP00000010946/1-1171 GSPELVASLC DPATVPVDFA LRLQSYTAAG YRVVALAGKP LPVTASLEAA ENSP00000327214/1-1180 GSPELVAGLC NPETVPTDFA QMLQSYTAAG YRVVALASKP LPTVPSLEAA bmy_08215T0/1-1023 GSPELVAGLC DPKTVPTDFA QMLQSYTAAG YRVVALASKP LPIAPSMEAA BACU005692/1-1320 GSPELVAGLC DPKTVPTDFA QMLQSYTAAG YRVVALASKP LPIAPSMEAA 851 900 ENSTTRP00000014731/1-1168 QQLTRDTVEW KLSLLGLLVM QNLLKPQTTP VIQALRRTCI RTVMVTGDNL ENSBTAP00000010946/1-1171 QQLPRDAVEQ ELSLLGLLVM RNLLKPQTPG VIQALRKTHI RTVMVTGDNL ENSP00000327214/1-1180 QQLTRDTVEG DLSLLGLLVM RNLLKPQTTP VIQALRRTRI RAVMVTGDNL bmy_08215T0/1-1023 QQLTRDTVEW KLSLLGLLVM QNLLKPQTTP VIQALRRTCI RTVMVTGDNL BACU005692/1-1320 QQLTRDTVEW KLSLLGLLVM QNLLKPQTTP VIQALRRTCI RTVMVTGDNL 901 950 ENSTTRP00000014731/1-1168 QTAVTVAQGC GMVGPQERLV IVHAKPPERG QPASLELLPV ESSVAVNGAQ ENSBTAP00000010946/1-1171 QTAVTVAQGC GMVGPRERLV IVHAVPPEQG QRASLQLQPV ESFAATNGAQ ENSP00000327214/1-1180 QTAVTVARGC GMVAPQEHLI IVHATHPERG QPASLEFLPM ESPTAVNGVK bmy_08215T0/1-1023 QTAVTVAQGC GMVGPQERLA IIHANPPERG QPASLELLPV ESSAAVNGAQ BACU005692/1-1320 QTAVTVAQGC GMVGPQERLA IIHANPPERG QPASLELLPV ESSAAVNGAQ 951 1000 ENSTTRP00000014731/1-1168 DPDQAASYTM EPDPRSSRLA LSGSTFGVLM KHFPKLLPKV LVQGTVFARM ENSBTAP00000010946/1-1171 GPDLAASCTM EPDPRSSHLA LSGSSFSVLV KHFPKLLPKV LVQGTIFARM ENSP00000327214/1-1180 DPDQAASYTV EPDPRSRHLA LSGPTFGIIV KHFPKLLPKV LVQGTVFARM bmy_08215T0/1-1023 DPDQAASYTM EPDPRSSHLA LSGSTFGVLM KHFPKLLPKV LVQGTVFARM BACU005692/1-1320 DPDQAASYTM EPDPRSSHLA LSGSTFGVLM KHFPKLLPKV LVQGTVFARM 1001 1050 ENSTTRP00000014731/1-1168 APEQKTELVC ELQKLQYCVG MCGDGANDCG ALKAADVGIS LSQAEASVVS ENSBTAP00000010946/1-1171 APEQKTELVC ELQKLQYCVG MCGDGANDCG ALKAADVGIS LSQAEASVVS ENSP00000327214/1-1180 APEQKTELVC ELQKLQYCVG MCGDGANDCG ALKAADVGIS LSQAEASVVS bmy_08215T0/1-1023 APEQKTELVC ELQKLQYCVG MCGDGANDCG ALKAADVGIS LSQAEASVVS BACU005692/1-1320 APEQKTELVC ELQKLQYCVG MCGDGANDCG ALKAADVGIS LSQAEASVVS 1051 1100 ENSTTRP00000014731/1-1168 PFTSSVANIE CVPMVIREGR CSLDTSFSVF KYMALYSLTQ FISVLILYTV ENSBTAP00000010946/1-1171 PFTSSVASIE CVPMVIREGR CSLDTSFSVF KYMALYSLTQ FISVLILYTV ENSP00000327214/1-1180 PFTSSMASIE CVPMVIREGR CSLDTSFSVF KYMALYSLTQ FISVLILYTI bmy_08215T0/1-1023 PFTSSMANIE CVPMVIREGR CSLDTSFSVF KYMALYSLTQ FISVLILYTV BACU005692/1-1320 PFTSSMANIE CVPMVIREGR CSLDTSFSVF KYMALYSLTQ FISVLILYTV 1101 1150 ENSTTRP00000014731/1-1168 NTNLGDVQFL VIDLVITTTV AVLMSRTGPA LALGQARPPG ALLSVPVLSS ENSBTAP00000010946/1-1171 NTNLGDLQFL AVDLVITATV AVLMSRTGPA RVLGRARPPG SLLSGPVLGS ENSP00000327214/1-1180 NTNLGDLQFL AIDLVITTTV AVLMSRTGPA LVLGRVRPPG ALLSVPVLSS bmy_08215T0/1-1023 NTNLGDVQFL VIDLAITTTV AVLMSRTRPA LALGQARPPG ALLSVPVLSS BACU005692/1-1320 NTNLGDVQFL VIDLVITTTV AVLMSRTRPA LALGQARPPG ALLSVPVLSS 1151 1200 ENSTTRP00000014731/1-1168 LLLQVALVAS VQLGGYFLTV AQPWFVPLNR TVPAPD-LPN YE-TVVFCLS ENSBTAP00000010946/1-1171 LLLQVALVAG VQLGGYFMMV AQPWFVPLNR TVPAPDNLPN YENTVVFSLS ENSP00000327214/1-1180 LLLQMVLVTG VQLGGYFLTL AQPWFVPLNR TVAAPDNLPN YENTVVFSLS bmy_08215T0/1-1023 LLLQVALVAS VQLGGYFLTV AQPW------ ---------- ---------- BACU005692/1-1320 LLLQVALVAS VQLGGYFLTV AQPWFVPLNR TVPAPDNLPN YENTVVFCLS 1201 1250 ENSTTRP00000014731/1-1168 SFQYLILDMA V--GAPFRR- LYTNXXXXXX XXXXXXXXXX XXLAPGLQ-- ENSBTAP00000010946/1-1171 SFQYLILAAA VSKGAPFRRP LYSNVPFLVA LVLLGSVLVG LVLAPGPLQG ENSP00000327214/1-1180 SFQYLILAAA VSKGAPFRRP LYTNVPFLVA LALLSSVLVG LVLVPGLLQG bmy_08215T0/1-1023 ---------- ---------- ---------- ---------- ---------- BACU005692/1-1320 SFQYLILAMA VSKGAPFRRP LYTNVPFLVA LVLLGSVLGG FLLVPGLPQG 1251 1300 ENSTTRP00000014731/1-1168 LLALRSIADT -FKLLLLGVV AFN-VAAFML ESVLDQCLPG CMRWLRPKRA ENSBTAP00000010946/1-1171 PLTLKSITST PFKLLLLGLV AFNVVAAFML ESLLDQYLPG CLRQLRPKRA ENSP00000327214/1-1180 PLALRNITDT GFKLLLLGLV TLNFVGAFML ESVLDQCLPA CLRRLRPKRA bmy_08215T0/1-1023 ---------- ---------- ---------- ---------- ---------- BACU005692/1-1320 LLTLRSIADT YFKLLLLGLV AFNFVGAFML ESVLDQCLPG CLRWLRPKRA 1301 1350 ENSTTRP00000014731/1-1168 SKKRFKQLEQ ELAEQPWPP- AAGPGR ENSBTAP00000010946/1-1171 SKKRFKQLER ELAEQPWPP- PPGPVR ENSP00000327214/1-1180 SKKRFKQLER ELAEQPWPPL PAGPLR bmy_08215T0/1-1023 ---------- ---------- ------ BACU005692/1-1320 SKKRFKQLEQ ELAEQPWPP- PTGPMR