KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:38 2014 Check: 00 .. Name: ENSP00000316794/1-475 Len: 516 Check: 3720 Weight: 1.00 Name: ENSBTAP00000010965/1-482 Len: 516 Check: 7897 Weight: 1.00 Name: ENSTTRP00000002546/1-478 Len: 516 Check: 9426 Weight: 1.00 Name: bmy_07741T0/1-513 Len: 516 Check: 634 Weight: 1.00 Name: BACU013007/1-512 Len: 516 Check: 959 Weight: 1.00 // 1 50 ENSP00000316794/1-475 -MVEDLAASY IVLKLENEIR QAQVQWLMEE NAALQAQIPE LQKSQAAKEY ENSBTAP00000010965/1-482 -MMEDLAASY IALKSENEIL QAQVQ-LMEE NAALQSLIQE LQKPQAAKED ENSTTRP00000002546/1-478 -MVEDLAASY IALKLENEIL QAQVQRLMEE NAALQSQIPE LQKPQAAKED bmy_07741T0/1-513 MMVEDLAASY IALKLENEIL QAQVQRLMEE NAALQSQIPE LQKPQAAKEN BACU013007/1-512 -MVEDLAASY IALKLENEIL QAQVQRLMEE NAALQSQIPE LQKPQAAKED 51 100 ENSP00000316794/1-475 DLLRKSSEAK EPQKLPEHMN PPAAWEAQKT PEFKEPQKPP EPQDLLPWEP ENSBTAP00000010965/1-482 EPL------Q ETQRLPEPPG FSSSLGTPRA PRCRGVPKPR ESQDLQTWET ENSTTRP00000002546/1-478 EPLQKHSEAQ ETQRPPETLD FPAALEPQEP PEVKEPQKPR ESQDLPSWEP bmy_07741T0/1-513 EPLQKPSEAQ ETQRPPETLD FPAALEPQEP PEVKEPQKPR ETQDLPSWEP BACU013007/1-512 EPLQKPSEAQ ETQRPPETLD FPAALGPQEP PEVKEPQKPR ETQDLPSWEP 101 150 ENSP00000316794/1-475 PAAWELQ--- EAPAAPESLA PPATRESQKP PMAHEIPTVL ---------- ENSBTAP00000010965/1-482 SAFQDPQKSL EPLASPGCLE PPATQDPQAP P--------- ----PSEAKE ENSTTRP00000002546/1-478 SAAQEPQKSL EPPADPESLE PPATQDPQAP PMVHEIPAL- ---------- bmy_07741T0/1-513 SAAQEPQKSL EPPADPESLE PPATQDPQAP SMVHELTGAW ISHKPSEAKE BACU013007/1-512 SAAQEPQKSL EPPADPESLE SPATQDPQAP PMVHELTGAW ISHKPSEAKE 151 200 ENSP00000316794/1-475 ---------- ---------- EGQGPANTQD ATIAQEPKNS EPQDPPNIEK ENSBTAP00000010965/1-482 PQKLPMAQED QEDHKPPNFK EDQKSPDTQN APAGQEPQKL EPWHPSNAQE ENSTTRP00000002546/1-478 ---------- ---------- EVQEPPDTQD APAGPGTQNS ELQDPPNAQE bmy_07741T0/1-513 PQKLPMAQEV Q---KPAEFK EVQEPPDTQD APAGQGTQNS ELQDPPNAQE BACU013007/1-512 PQKLPMAQEV Q---KPAEFK EVQEPPDTQD APAGQGTQNS ELQDPPNAQE 201 250 ENSP00000316794/1-475 PQEAPEYQET AAQLEFLELP PPQEPLEPSN AQEFLELSAA QESLEGLIVV ENSBTAP00000010965/1-482 LQEAPKCQDT SRHMELFEFP APQELQDPKH AQEFLGLITS KESLDSLTAA ENSTTRP00000002546/1-478 LQEAPKCQDT STHLESLEFL APQELQDPSD VQEFLGLLTA KESXXXXXXX bmy_07741T0/1-513 LQETPKCQDT STHLESLEFL APQELQDPSD AQEFLGLLTP KESLDGLTAA BACU013007/1-512 LQEAPKCQDT STHLESLEFL APQELQDPSD AQEFLGLLTP KESLDGLTAA 251 300 ENSP00000316794/1-475 ETSAASEFPQ APIGLEATDF PLQYTLTFSG DSQKLPEFLV QLYSYMRVRG ENSBTAP00000010965/1-482 ETTTASEFPQ SSNELKDEAF LLEYSLAFSR DTQKIPEFLV QLKSSMRVRG ENSTTRP00000002546/1-478 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXMRVRH bmy_07741T0/1-513 ETSAASEFPQ SSNGLEAEAF PLEYPLAFNG DAQKLPEFLV QLNSYMRVRG BACU013007/1-512 ETSAASEFPQ SSNGLEAEVF PLEYPLAFNG DAQKLPEFLV QLNSYMRVRG 301 350 ENSP00000316794/1-475 HLYPTEAALV SFVGNCFSGR AGWWFQLLLD IQSPLLEQCE SFIPVLQDTF ENSBTAP00000010965/1-482 CLYPTKAALV SFVGNYFLGK EEKLFQLLAD IQSPLLEQFE SFMQVLQDTF ENSTTRP00000002546/1-478 --YPTEAALV SFVGNC-SGE AGKWFQ-LAD IQSPLLEQFE S-IQVL-DTF bmy_07741T0/1-513 HLYPTEAALV SFVGNRFSGE AGKWFQPLVD IQSPLLEQFE SFIQVLQDTF BACU013007/1-512 HLYPTEAALV SFVGNRFSGE AGKWFQPLVD IQSPLLEQFE SFIQVLQDTF 351 400 ENSP00000316794/1-475 DNPENMKDAN QCIHQLCQGE GHV---ATHF HLIAQELNWD ESTLWIQFQE ENSBTAP00000010965/1-482 DNPENMEDAN HHIPKLCQQE DHVHQYATHF HLIIQEQNLG ESIL------ ENSTTRP00000002546/1-478 DNPENMEDAN HRIRKLCQGE DHVHQYATHF HIIAQELNWD ESTLCIQFQE bmy_07741T0/1-513 DNPENMEDAN HRIRKLCQGE DHVHQYATHF HIIAQELNWD ESTLCIQFQE BACU013007/1-512 DNPENMEDAN HRIRKLCQGE DHVHQYATHF HIIAQELNWD ESTLCIQFQE 401 450 ENSP00000316794/1-475 GLASSIQDEL SHTSPATNLS DLITQCISLE EK----PDPN PLGKSSSAEG ENSBTAP00000010965/1-482 -------SEL SHTSPATNLS DLITQCISLE EKLSGKPDPS PQDASPSEER ENSTTRP00000002546/1-478 GLASSIRDEL SHTNPATNLS DLITQCITLE EKLSGKPDLS PQEASPSQEK bmy_07741T0/1-513 GLASSIRDEL SRTNPATNLS DLITQCITLE EKLSGKPDLS PQEASPSQEK BACU013007/1-512 GLASSIRDEL SRTNPATNLS DLITQCITLE EKLSGKPDLS PQEASPSQEK 451 500 ENSP00000316794/1-475 DGPESPPAEN QPMQAAINCP HISEAEWVRW HKGRLCLYCG YPGHFARDCP ENSBTAP00000010965/1-482 AGLKSLPAEN QPVQASSCHQ HLNEADRARC REGHLCLYCG HPGHFTRDCP ENSTTRP00000002546/1-478 AGFDSPPAEN HPVQASSNRP HLSEAERARR REGHLCLYCG YPGHFARNCP bmy_07741T0/1-513 AGFDSPPDEN QPVQASSNRP HLSEAERARR REGHLCLYCG YPGHFARDCP BACU013007/1-512 AGFDSPPDEN QPVQASSNRP HLSEAERARR REGHLCLYCG YPGHFSRDCP 501 550 ENSP00000316794/1-475 VKPHQALQAG NIQACQ ENSBTAP00000010965/1-482 VKLHHAQQVG NIEALW ENSTTRP00000002546/1-478 VKPHRAQQAG NIEARR bmy_07741T0/1-513 VKPHRAQQAG NIEARR BACU013007/1-512 VKPHRAQQAG NIEARR