KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:41 2014 Check: 00 .. Name: ENSTTRP00000006003/1-596 Len: 616 Check: 8564 Weight: 1.00 Name: BACU001110/1-229 Len: 616 Check: 9239 Weight: 1.00 Name: bmy_09522T0/1-407 Len: 616 Check: 6754 Weight: 1.00 Name: ENSP00000366886/1-597 Len: 616 Check: 3429 Weight: 1.00 Name: ENSBTAP00000010998/1-597 Len: 616 Check: 3578 Weight: 1.00 // 1 50 ENSTTRP00000006003/1-596 MERPAPLAVL PFSDPAHALS LLRGLSQLRA ERKFLDVTLE AAGGRDFPAH BACU001110/1-229 ---------- ---------- ---------- ---------- ---------- bmy_09522T0/1-407 MERPAPLAVL PFSDPAHALS LLRGLSQLRA ERKFLDVTLE AAGGRDFPAH ENSP00000366886/1-597 MERPAPLAVL PFSDPAHALS LLRGLSQLRA ERKFLDVTLE AAGGRDFPAH ENSBTAP00000010998/1-597 MERPAPLAVL PFSDPAHALS LLRGLSQLRA ERKFLDVTLE AAGGRDFPAH 51 100 ENSTTRP00000006003/1-596 RAVLAAASPY FRAMFAGQLR ESRAERVRLH GVPPDMLQLL LDFSYTGRVA BACU001110/1-229 ---------- ---------- ---------- ---------- ---------- bmy_09522T0/1-407 RAVLAAASPY FRAMFAGQLR ESRAERVRLH GVPPDMLQLL LDFSYTGRVA ENSP00000366886/1-597 RAVLAAASPY FRAMFAGQLR ESRAERVRLH GVPPDMLQLL LDFSYTGRVA ENSBTAP00000010998/1-597 RAVLAAASPY FRAMFAGQLR ESRAERVRLH GVPPDMLQLL LDFSYTGRVA 101 150 ENSTTRP00000006003/1-596 VSGDNAEPLL RAADLLQFPA VKEACGAFLQ QQLDLTNCLD M-DFAEAFSC BACU001110/1-229 ---------- ---------- ---------- ---------- ---------- bmy_09522T0/1-407 VSGDNAEPLL RAADLLQFPA VKEACGAFLQ QQLDLTNCLD MQDFAEAFSC ENSP00000366886/1-597 VSGDNAEPLL RAADLLQFPA VKEACGAFLQ QQLDLANCLD MQDFAEAFSC ENSBTAP00000010998/1-597 VSGDNAEPLL RAADLLQFPA VKEACGAFLQ QQLDLTNCLD MQDFAEAFSC 151 200 ENSTTRP00000006003/1-596 AGLASAAQRF ILRHVGELGA EQLERLPLAR LLRYLXXXXX XXXXXXXXXX BACU001110/1-229 ---------- ---------- ---------- ---------- ---------- bmy_09522T0/1-407 AGLASAAQRF ILRHVGELGA EQLERLPLAR LLRYLRDDGL CVPKEEAAYQ ENSP00000366886/1-597 SGLASAAQRF ILRHVGELGA EQLERLPLAR LLRYLRDDGL CVPKEEAAYQ ENSBTAP00000010998/1-597 AGLASAAQRF ILRHVGELGA EQLERLPLAR LLRYLRDDGL CVPKEEAAYQ 201 250 ENSTTRP00000006003/1-596 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001110/1-229 ---------- ---------- ---------- ---------- ---------- bmy_09522T0/1-407 LALRWVRADP PRRAAHWPQL LEAVRLPFVR RFYLLAHVEA EPLVARCPPC ENSP00000366886/1-597 LALRWVRADP PRRAAHWPQL LEAVRLPFVR RFYLLAHVEA EPLVARCPPC ENSBTAP00000010998/1-597 LALRWVRADP PRRAAHWPQL LEAVRLPFVR RFYLLAHVEA EPLVARCPPC 251 300 ENSTTRP00000006003/1-596 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001110/1-229 ---------- ---------- -----MRPRP STGLAEILVL VGGCDQDCDE bmy_09522T0/1-407 LRLLREARDF QAARYDRHDR GPCPRMRPRP STGLAEILVL VGGCDQDCDE ENSP00000366886/1-597 LRLLREARDF QAARYDRHDR GPCPRMRPRP STGLAEILVL VGGCDQDCDE ENSBTAP00000010998/1-597 LRLLREARDF QAARYDRHDR GPCPRMRPRP STGLAEILVL VGGCDQDCDE 301 350 ENSTTRP00000006003/1-596 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XGSDGSRLYD BACU001110/1-229 LVTVDCYNPQ TGQWRYLAEF PDHLGGGYSI VALGNDIYVT AVS------- bmy_09522T0/1-407 LVTVDCYNPQ TGQWRYLAEF PDHLGGGYSI VALGNDIYVT G--------- ENSP00000366886/1-597 LVTVDCYNPQ TGQWRYLAEF PDHLGGGYSI VALGNDIYVT GGSDGSRLYD ENSBTAP00000010998/1-597 LVTVDCYNPQ TGQWRYLAEF PDHLGGGYSI VALGNDIYVT GGSDGSRLYD 351 400 ENSTTRP00000006003/1-596 CVWRYNSSVN EWTEVAPMLK AREYHSSSVL DGLLYVVAAD STERYDHTTD BACU001110/1-229 ---------- ---------- ---------- ---------- ---------- bmy_09522T0/1-407 ---------- EWA------- ---------- ---------- ---------- ENSP00000366886/1-597 CVWRYNSSVN EWAEVAPMLK AREYHSSSVL DGLLYVVAAD STERYDHTTD ENSBTAP00000010998/1-597 CVWRYNSSVN EWTEVAPMLK AREYHSSSVL DGLLYVVAAD STERYDHTTD 401 450 ENSTTRP00000006003/1-596 SWEALQPMTY PMDNCSTTAC RGRLYAIGSL AGKETMVMQC YNPDMDLWSL BACU001110/1-229 ---------- ---------- ----LCIAGA PGP------- ---------- bmy_09522T0/1-407 ---------- ---------- -------GGW SGG------- ---------- ENSP00000366886/1-597 SWEALQPMTY PMDNCSTTAC RGRLYAIGSL AGKETMVMQC YDPDTDLWSL ENSBTAP00000010998/1-597 SWEALQPMTY PMDNCSTTAC RGRLYAIGSL AGKETMVMQC YHPDMDLWSL 451 500 ENSTTRP00000006003/1-596 VDCGQLPPWS FAPKTVTLNG LMYFIRDDSA EVDVYNPTKN EWDKIPSMNQ BACU001110/1-229 ---------A LVREDVCLRG ----ARDDSA EVDVYNPTKN EWDKIPSMNQ bmy_09522T0/1-407 -------PW- -AARTPAPLG EYIHLQENPQ YLESRDRT-- -W-------- ENSP00000366886/1-597 VDCGQLPPWS FAPKTATLNG LMYFVRDDSA EVDVYNPTRN EWDKIPSMNQ ENSBTAP00000010998/1-597 VDCGQLPPWS FAPKTVTLNG LMYFIRDDSA EVDVYNPTKN EWDKIPSMNQ 501 550 ENSTTRP00000006003/1-596 VHVGGSLAVL GGKLYVSGGY DNTFELSDVV EAYDPETRAW SVVGRLPEPT BACU001110/1-229 VHVGGSLAVL GGKLYVSGGY DNTFELSDVV EAYDPETRAW SVVGRLPEPT bmy_09522T0/1-407 VQVATSLPP- ---------- ---------- ---------- ------PPPP ENSP00000366886/1-597 VHVGGSLAVL GGKLYVSGGY DNTFELSDVV EAYDPETRAW SVVGRLPEPT ENSBTAP00000010998/1-597 VHVGGSLAVL GGKLYVSGGY DNTFELSDVV EAYDPETRAW SVVGRLPEPT 551 600 ENSTTRP00000006003/1-596 FWHGSVSIFR QFMPQTPLGG RGFELDSGSS DMGVGRPRPP QNPAELH--- BACU001110/1-229 FWHGSVSIFR QFMPQTPL-G RGFELDSGSG DMGVGRPRPP QDPAELQQPR bmy_09522T0/1-407 GWHA-----R TFL------- -GLILKI--- ---------- ---------- ENSP00000366886/1-597 FWHGSVSIFR QFMPQTFSGG RGFELDSGSD DMDPGRPRPP RDPDELH--- ENSBTAP00000010998/1-597 FWHGSVSIFR QFMPQTPLGG RGFELDGGSS DMDVGQPRPP QNPAELH--- 601 650 ENSTTRP00000006003/1-596 ---------- ------ BACU001110/1-229 PGPGRALVQV TQHLRG bmy_09522T0/1-407 ---------- ------ ENSP00000366886/1-597 ---------- ------ ENSBTAP00000010998/1-597 ---------- ------