KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:43 2014 Check: 00 .. Name: ENSTTRP00000001821/1-1442 Len: 1499 Check: 2212 Weight: 1.00 Name: ENSP00000339353/1-1443 Len: 1499 Check: 1908 Weight: 1.00 Name: ENSBTAP00000011004/1-1444 Len: 1499 Check: 3312 Weight: 1.00 Name: bmy_07563T0/1-1158 Len: 1499 Check: 5558 Weight: 1.00 Name: BACU001454/1-1470 Len: 1499 Check: 560 Weight: 1.00 // 1 50 ENSTTRP00000001821/1-1442 MYAVYKQAHP PTGLEFSMYC NFFNNSERNL VVAGTSQLYV YRLNRDAEVP ENSP00000339353/1-1443 MYAVYKQAHP PTGLEFSMYC NFFNNSERNL VVAGTSQLYV YRLNRDAEAL ENSBTAP00000011004/1-1444 MYAVYKQAHP PTGLEFSMYC NFFNNSERNL VVAGTSQLYV YRLNRDSEAP bmy_07563T0/1-1158 MYAVYKQAHP PTGLEFSMYC NFFNNSERNL VVAGTSQLYV YRLNRDAEVP BACU001454/1-1470 MYAVYKQAHP PTGLEFSMYC NFFNNSERNL VVAGTSQLYV YRLNRDAEVP 51 100 ENSTTRP00000001821/1-1442 TKNDRSAEGK AHREHREKLE LVASFSFFGN VMSMASVQLA GAKRDALLLS ENSP00000339353/1-1443 TKNDRSTEGK A---HREKLE LAASFSFFGN VMSMASVQLA GAKRDALLLS ENSBTAP00000011004/1-1444 TKNDRSTDGK AHREHREKLE LVASFSFFGN VMSMASVQLA GAKRDALLLS bmy_07563T0/1-1158 TKNDRSAEGK AHREHREKLE LVASFSFFGN VMSMASVQLA GAKRDALLLS BACU001454/1-1470 TKNDRSAEGK AHREHREKLE LVASFSFFGN VMSMASVQLA GAKRDALLLS 101 150 ENSTTRP00000001821/1-1442 FKDAKXXXXX XXXXXXXXXX XXXXXXXXXX XXDGFVQNVH TPRVRVDPDG ENSP00000339353/1-1443 FKDAKLSVVE YDPGTHDLKT LSLHYFEEPE LRDGFVQNVH TPRVRVDPDG ENSBTAP00000011004/1-1444 FKDAKLSVVE YDPGTHDLKT LSLHYFEEPE LRDGFVQNVH TPRVRVDPDG bmy_07563T0/1-1158 FKDAKLSVVE YDPGTHDLKT LSLHYFEEPE LRDGFVQNVH TPRVRVDPDG BACU001454/1-1470 FKDAKLSVVE YDPGTHDLKT LSLHYFEEPE LRDGFVQNVH TPRVRVDPDG 151 200 ENSTTRP00000001821/1-1442 RCAAMLIYGT RLVVLPFRRE SLAEEHEGLV GEGQRSSFLP SYIIDVRALD ENSP00000339353/1-1443 RCAAMLVYGT RLVVLPFRRE SLAEEHEGLV GEGQRSSFLP SYIIDVRALD ENSBTAP00000011004/1-1444 RCAAMLIYGT RLVVLPFRRE SLAEEHEGLV GEGQRSSFLP SYIIDVRALD bmy_07563T0/1-1158 RCAAMLIYGT RLVVLPFRRE SLAEEHEGLV GEGQRSSFLP SYIIDVRALD BACU001454/1-1470 RCAAMLIYGT RLVVLPFRRE SLAEEHEGL- ----RSSFLP SYIIDVRALD 201 250 ENSTTRP00000001821/1-1442 EKLLNIVDLQ FLHGYYEPTL LILFEPNQTW PGRVAVRQDT CSIVAISLNI ENSP00000339353/1-1443 EKLLNIIDLQ FLHGYYEPTL LILFEPNQTW PGRVAVRQDT CSIVAISLNI ENSBTAP00000011004/1-1444 EKLLNIVDLQ FLHGYYEPTL LILFEPNQTW PGRVAVRQDT CSIVAISLNI bmy_07563T0/1-1158 EKLLNIVDLQ FLHGYYEPTL LILFEPNQTW PGRVAVRQDT CSIVAISLNI BACU001454/1-1470 EKLLNIVDLQ FLHGYYEPTL LILFEPNQTW PGRVAVRQDT CSIVAISLNI 251 300 ENSTTRP00000001821/1-1442 TQKVHPVIWS LTSLPFDCTQ ALAVPKPIGG VVVFAVNSLL YLNQSVPPYG ENSP00000339353/1-1443 TQKVHPVIWS LTSLPFDCTQ ALAVPKPIGG VVVFAVNSLL YLNQSVPPYG ENSBTAP00000011004/1-1444 TQKVHPVIWS LTSLPFDCTQ ALAVPKPIGG VVIFAVNSLL YLNQSVPPYG bmy_07563T0/1-1158 TQKVHPVIWS LTSLPFDCTQ ALAVPKPIG- ---------- ---------- BACU001454/1-1470 TQKVHPVIWS LTSLPFDCTQ ALAVPKPIGG VVVFAVNSLL YLNQSVPPYG 301 350 ENSTTRP00000001821/1-1442 VALNSLTTGT TAFPLRTQEG VRITLDCAQA AFISYDKMVI SLKGGEIYVL ENSP00000339353/1-1443 VALNSLTTGT TAFPLRTQEG VRITLDCAQA TFISYDKMVI SLKGGEIYVL ENSBTAP00000011004/1-1444 VALNSLTTGT TAFPLRTQEG VRITLDCAQA AFISYDKMVI SLKGGEIYVL bmy_07563T0/1-1158 ---------- ---------- ---------- ---------- ---------- BACU001454/1-1470 VALNSLTTGT TAFPLRTQEG VRITLDCAQA AFISYDKMVI SLKGGEIYVL 351 400 ENSTTRP00000001821/1-1442 TLITDGMRSV RAFHFDKAAA SVLTTSMVTM EPGYLFLGSR LGNSLLLKYT ENSP00000339353/1-1443 TLITDGMRSV RAFHFDKAAA SVLTTSMVTM EPGYLFLGSR LGNSLLLKYT ENSBTAP00000011004/1-1444 TLITDGMRSV RAFHFDKAAA SVLTTSMVTM EPGYLFLGSR LGNSLLLKYT bmy_07563T0/1-1158 ---------- ---------- ---------- ---------- ---------- BACU001454/1-1470 TLITDGMRSV RAFHFDKAAA SVLTTS---- ---------- --------YT 401 450 ENSTTRP00000001821/1-1442 EKLQEPPAGT AREVADKEEP PSKKKRVDAT AGWSVGGKSV PQDEVDEIEV ENSP00000339353/1-1443 EKLQEPPASA VREAADKEEP PSKKKRVDAT AGWSAAGKSV PQDEVDEIEV ENSBTAP00000011004/1-1444 EKLQEPPAST AREAADKEEP PSKKKRVDAT TGWS-GSKSV PQDEVDEIEV bmy_07563T0/1-1158 ---------- ---------- ---------- ---------- ---------- BACU001454/1-1470 EKLQEPPAGT AREVADKEEP PSKKKRVDAT ASWS-GGKSA PQDEVDEIEV 451 500 ENSTTRP00000001821/1-1442 YGSEAQSGTQ LATYSFEVCD SILNIGPCAN AAVGEPAFLS EEFQSSPEPD ENSP00000339353/1-1443 YGSEAQSGTQ LATYSFEVCD SILNIGPCAN AAVGEPAFLS EEFQNSPEPD ENSBTAP00000011004/1-1444 YGSEAQSGTQ LATYSFEVCD SILNIGPCAN AAMGEPAFLS EEFQNSPEPD bmy_07563T0/1-1158 ---------- ---------- ---------- ---------- -EFQNSPEPD BACU001454/1-1470 YGSEAQSGTQ LATYSFEVCD SILNIGPCAN AAMGEPAFLS EEFQNSPEPD 501 550 ENSTTRP00000001821/1-1442 LEIVVCSGYG KNGALSVLQK SIRPQVVTTF ELPGCYDMWT VIAPVRKEQE ENSP00000339353/1-1443 LEIVVCSGHG KNGALSVLQK SIRPQVVTTF ELPGCYDMWT VIAPVRKEEE ENSBTAP00000011004/1-1444 LEIVVCSGYG KNGALSVLQK SIRPQVVTTF ELPGCYDMWT VIAPVRKEQE bmy_07563T0/1-1158 LEIVVCSGYG KNGALSVLQK SIRPQVVTTF ELPGCYDMWT VIAPVRKEQ- BACU001454/1-1470 LEIVVCSGYG KNGALSVLQK SIRPQVVTTF ELPGCYDMWT VIAPVRKEQE 551 600 ENSTTRP00000001821/1-1442 ESTKGEGTEQ EPS-APEADD DGRRHGFLIL SREDSTMILQ TGQEIMELDT ENSP00000339353/1-1443 DNPKGEGTEQ EPSTTPEADD DGRRHGFLIL SREDSTMILQ TGQEIMELDT ENSBTAP00000011004/1-1444 ETLKGEGTEP EPG-APEAED DGRRHGFLIL SREDSTMILQ TGQEIMELDA bmy_07563T0/1-1158 ---------- ---------- ---------- -------ILQ TGQEIMELDT BACU001454/1-1470 ETTKGEGAEQ EPS-APEADD DGRRHGFLIL SREDSTMILQ TGQEIMELDT 601 650 ENSTTRP00000001821/1-1442 SGFATQGPTV FAGNIGDNRY IVQVSPLGIR LLEGVNQLHF IPVDLGSPIV ENSP00000339353/1-1443 SGFATQGPTV FAGNIGDNRY IVQVSPLGIR LLEGVNQLHF IPVDLGAPIV ENSBTAP00000011004/1-1444 SGFATQGPTV FAGNIGDNRY IVQVSPLGIR LLEGVNQLHF IPVDLGSPIV bmy_07563T0/1-1158 SGFATQGPTV FAGNIGDNRY IVQVSPLGIR LLEGVNQLHF IPVDLGSPIV BACU001454/1-1470 SGFATQGPTV FAGNIGDNRY IVQVSPLGIR LLEGVNQLHF IPVDLGSPIV 651 700 ENSTTRP00000001821/1-1442 QCAVADPYVV IMSAEGHVTM LLLKSDSYGG RHHRLALHKP PLHHQ-KVIT ENSP00000339353/1-1443 QCAVADPYVV IMSAEGHVTM FLLKSDSYGG RHHRLALHKP PLHHQSKVIT ENSBTAP00000011004/1-1444 QCAVADPYVV IMSAEGHVTM FLLKNDSYGG RHHRLALHKP PLHHQSKVIT bmy_07563T0/1-1158 QCAVADPYVV IMSAEGHITM FLLKSDSYGG RHHRLALHKP PLHHQSKVIT BACU001454/1-1470 QCAVADPCVV IMSAEGHITM FLLKSDSYGG RHHRLALHKP PLHHQSKVIT 701 750 ENSTTRP00000001821/1-1442 LCVYRDVSGL FTAESRLGRA RXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000339353/1-1443 LCLYRDLSGM FTTESRLGGA RDELGGRSGP EAEGLGSETS PTVDDEEEML ENSBTAP00000011004/1-1444 LCVYRDVSGM FTTESRLGGV RDELGGRGGP EAEGQGAETS PTVDDEEEML bmy_07563T0/1-1158 LCVYRDVSGM FTTESRLGGA RDEVGGRSGS EAECQGSETS PTVDDEEEML BACU001454/1-1470 LCVYRDVSGM FTTESRLGGA RDEMGGRSGS EAECQGSETS PTVDDEEEML 751 800 ENSTTRP00000001821/1-1442 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000339353/1-1443 YGDSGSLFSP SKEEARRSSQ PPADRDPAPF RAEPTHWCLL VRENGTMEIY ENSBTAP00000011004/1-1444 YGDSGSLFSP SKEEARRSSQ PPADRDPAPF RAEPTHWCLL VRENGAMEIY bmy_07563T0/1-1158 YGDSGSLFSP SKEEARRSSQ PPADRDPTPF RAEPTHWCLL VRENGTMEIY BACU001454/1-1470 YGDSGSLFSP SKEEARRSSQ PPADRDPTPF RAEPTHWCLL VRENGTMEIY 801 850 ENSTTRP00000001821/1-1442 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000339353/1-1443 QLPDWRLVFL VKNFPVGQRV LVDSSFGQPT TQGEARREEA TRQGELPLVK ENSBTAP00000011004/1-1444 QLPDWRLVFL VKNFPVGQRV LVDSSFGQPT TQGEARKEEA TRQGELPLVK bmy_07563T0/1-1158 QLPDWRLVFL VKNFPVGQRV LVDSSFGQPT TQGEARKEEA TRQGELPLVK BACU001454/1-1470 QLPDWRLVFL VKNFPVGQRV LVDSSFGQPT TQGEARKEEA TRQGELPLVK 851 900 ENSTTRP00000001821/1-1442 XXXXXXXXXX XXXXXXXVHV N-ELLVYEAF PHDSQLGPGD HKVRFK---- ENSP00000339353/1-1443 EVLLVALGSR QSRPYLLVHV DQELLIYEAF PHDSQLGQGN LKVRFKK--- ENSBTAP00000011004/1-1444 EVLLVALGSR QRRPYLLVHV DQELLIYEAF PHDSQLGQGN LKVRFKK--- bmy_07563T0/1-1158 EVLLVALGSR QRRPYLLVHV DQELLVYEAF PHDSQLGQGN LKVRFKK--- BACU001454/1-1470 EVLLVALGSR QRRPYLLVHV DQELLVYEAF PHDSQLGQGN LKVRFKKVQC 901 950 ENSTTRP00000001821/1-1442 ---------- ---------- -------VPH SINFREKKPK PSKKKAEGGS ENSP00000339353/1-1443 ---------- ---------- -------VPH NINFREKKPK PSKKKAEGGG ENSBTAP00000011004/1-1444 ---------- ---------- -------VPH NINFREKKPK PSKKKAEGGS bmy_07563T0/1-1158 ---------- ---------- -------VPH SINFREKKPK PSKKKAEGGS BACU001454/1-1470 LGRAGCGEDV ERGRGRGLAL TAAVPPQVPH GINFREKKPK PSKKKAEGGS 951 1000 ENSTTRP00000001821/1-1442 AEEGAGARGR VARFRYFEDI YGYSGVFICG PSPHWLLVTG RGALRLHPMG ENSP00000339353/1-1443 AEEGAGARGR VARFRYFEDI YGYSGVFICG PSPHWLLVTG RGALRLHPMA ENSBTAP00000011004/1-1444 TEEGTGPRGR VARFRYFEDI YGYSGVFICG PSPHWLLVTG RGALRLHPMG bmy_07563T0/1-1158 AEEGAGARGR VARFRYFEDI YGYSGVFICG PSPHWLLVTG RGALRLHPMG BACU001454/1-1470 AEEGAGARGR VARFRYFEDI YGYSGVFICG PSPHWLLVTG RGALRLHPMG 1001 1050 ENSTTRP00000001821/1-1442 IDGPIDSFAP FHNVNCPRGF LYFNRQGELR ISVLPAYLSY DAPWPVRKIP ENSP00000339353/1-1443 IDGPVDSFAP FHNVNCPRGF LYFNRQGELR ISVLPAYLSY DAPWPVRKIP ENSBTAP00000011004/1-1444 IDGPIDSFAP FHNINCPRGF LYFNRQGELR ISVLPAYLSY DAPWPVRKIP bmy_07563T0/1-1158 IDGPIDSFAP FHNVNCPRGF LYFNRQGELR ISVLPAYLSY DAPWPVRKIP BACU001454/1-1470 IDGPIDSFAP FHNVNCPRGF LYFNRQGELR ISVLPAYLSY DAPWPVRKIP 1051 1100 ENSTTRP00000001821/1-1442 LRCTAHYVAY HVESKVYAVA TSTNTPCTRI PRMTGEEKEF ETIERDDRYI ENSP00000339353/1-1443 LRCTAHYVAY HVESKVYAVA TSTNTPCARI PRMTGEEKEF ETIERDERYI ENSBTAP00000011004/1-1444 LRCTAHYVAY HVESKVYAVA TSTSTPCTRV PRMTGEEKEF ETIERDERYV bmy_07563T0/1-1158 LRCTAHYVAY HVESKVYAVA TSTNTPCTRI PRMTGEEKEF ETIERDDRYI BACU001454/1-1470 LRCTAHYVAY HVESKVYAVA TSTNTPCTRI PRMTGEEKEF ETIERDDRYI 1101 1150 ENSTTRP00000001821/1-1442 HPQQEAFSIQ LISPVSWEAI PNARIELEEW EHVTCMKTVS LRSEETVSGL ENSP00000339353/1-1443 HPQQEAFSIQ LISPVSWEAI PNARIELQEW EHVTCMKTVS LRSEETVSGL ENSBTAP00000011004/1-1444 HPQQEAFCIQ LISPVSWEAI PNARIELEEW EHVTCMKTVS LRSEETVSGL bmy_07563T0/1-1158 HPQQEAFSIQ LISPVSWEAI PNARIELEEW EHVTCMKTVS LRSEETVSGL BACU001454/1-1470 HPQQEAFSIQ LISPVSWEAI PNARIELEEW EHVTCMKTVS LRSEETVSGL 1151 1200 ENSTTRP00000001821/1-1442 KGYVAAGTCL MQGEEVTCRG RILIMDVIEV VPEPGQPLTK NKFKVLYEKE ENSP00000339353/1-1443 KGYVAAGTCL MQGEEVTCRG RILIMDVIEV VPEPGQPLTK NKFKVLYEKE ENSBTAP00000011004/1-1444 KGYVAAGTCL MQGEEVTCRG RILIMDVIEV VPEPGQPLTK NKFKVLYEKE bmy_07563T0/1-1158 KGYVAAGTCL MQGEEVTCRG RILIMDVIEV VPEPGQPLTK NKFKVLYEKE BACU001454/1-1470 KGYVAAGTCL MQGEEVTCRG RILIMDVIEV VPEPGQPLTK NKFKVLYEKE 1201 1250 ENSTTRP00000001821/1-1442 QKGPVTALCH CNGHLVSAIG QKIFLWSLRA SELTGMAFID TQLYIHQMIS ENSP00000339353/1-1443 QKGPVTALCH CNGHLVSAIG QKIFLWSLRA SELTGMAFID TQLYIHQMIS ENSBTAP00000011004/1-1444 QKGPVTALCH CNGHLVSAIG QKIFLWSLRA SELTGMAFID TQLYIHQMIS bmy_07563T0/1-1158 QKGPVTALCH CNGHLVSAIG QKIFLWSLRA SELTGMAFID TQLYIHQMIS BACU001454/1-1470 QKGPVTALCH CNGHLVSAIG QKIFLWSLRA SELTGMAFID TQLYIHQMIS 1251 1300 ENSTTRP00000001821/1-1442 VKNFILAADV MKSISLLRYQ EESKTLSLVS RDAKPLEVYS VDFMVDSAQL ENSP00000339353/1-1443 VKNFILAADV MKSISLLRYQ EESKTLSLVS RDAKPLEVYS VDFMVDNAQL ENSBTAP00000011004/1-1444 VKNFILAADV MKSISLLRYQ EESKTLSLVS RDAKPLEVYS VDFMVDNAQL bmy_07563T0/1-1158 VKNFILAADV MKSISLLRYQ EESKTLSLVS RDAKPLEVYS VDFMVDNAQL BACU001454/1-1470 VKNFILAADV MKSISLLRYQ EESKTLSLVS RDAKPLEVYS VDFMVDNAQL 1301 1350 ENSTTRP00000001821/1-1442 GF-------- ---------- -----LVSDR DRNLMVYMYL PEAKESFGGM ENSP00000339353/1-1443 GF-------- ---------- -----LVSDR DRNLMVYMYL PEAKESFGGM ENSBTAP00000011004/1-1444 GF-------- ---------- -----LVSDR DRNLMVYMYL PEAKESFGGM bmy_07563T0/1-1158 GFLGERGGWG PRDLAGAGAD RGLCSLVSDR DRNLMVYMYL PEAKESFGGM BACU001454/1-1470 GFLGERGGWG PRDLAGAGAD RGLCSLVSDR DRNLMVYMYL PEAKESFGGM 1351 1400 ENSTTRP00000001821/1-1442 RLLRRADFHV GAHVNTFWRT PCRGAAEGPS KKSVVWENKH ITWFATLDGG ENSP00000339353/1-1443 RLLRRADFHV GAHVNTFWRT PCRGATEGLS KKSVVWENKH ITWFATLDGG ENSBTAP00000011004/1-1444 RLLRRADFHV GAHVNTFWRT PCRGAAEGPS KKSVVWENKH ITWFATLDGG bmy_07563T0/1-1158 RLLRRADFHV GAHVNTFWRT PCRGAAEGPS KKSVVWENKH ITWFATLDGG BACU001454/1-1470 RLLRRADFHV GAHVNTFWRT PCRGAAEGPS KKSVVWENKH ITWFATLDGG 1401 1450 ENSTTRP00000001821/1-1442 IGLLLPMQEK TYRRLLMLQN ALTTMLPHHA GLNPRAFRML HVDRRVLQNA ENSP00000339353/1-1443 IGLLLPMQEK TYRRLLMLQN ALTTMLPHHA GLNPRAFRML HVDRRTLQNA ENSBTAP00000011004/1-1444 IGLLLPMQEK TYRRLLMLQN ALTTMLPHHA GLNPRAFRML HVDRRVLQNA bmy_07563T0/1-1158 IGLLLPMQEK TYRRLLMLQN ALTTMLPHHA GLNPRAFR-- ---------- BACU001454/1-1470 IGLLLPMQEK TYRRLLMLQN ALTTMLPHHA GLNPRAFRML HVDRRVLQNA 1451 1500 ENSTTRP00000001821/1-1442 VRNVLDGELL NRYLYLSTME RGELAKKIGT TPDIILDDLL ETDRVTAHF ENSP00000339353/1-1443 VRNVLDGELL NRYLYLSTME RSELAKKIGT TPDIILDDLL ETDRVTAHF ENSBTAP00000011004/1-1444 VRNVLDGELL NRYLYLSTME RGELAKKIGT TPDIILDDLL ETDRVTAHF bmy_07563T0/1-1158 ---------- ---------- ---------- ---------- --------- BACU001454/1-1470 VRNVLDGELL NRYLYLSTME RGELAKKIGT TPDIILDDLL ETDRVTAHF