KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:48 2014 Check: 00 .. Name: ENSTTRP00000015194/1-1218 Len: 1243 Check: 762 Weight: 1.00 Name: ENSP00000327290/1-1188 Len: 1243 Check: 6818 Weight: 1.00 Name: ENSBTAP00000011032/1-1171 Len: 1243 Check: 2856 Weight: 1.00 Name: bmy_20492T0/1-867 Len: 1243 Check: 2010 Weight: 1.00 Name: BACU017963/1-1180 Len: 1243 Check: 5883 Weight: 1.00 // 1 50 ENSTTRP00000015194/1-1218 ARGASQRRLS LWPAAPRRCS APRPAAAPRT MYLTRGLLVA WALSLWPGFT ENSP00000327290/1-1188 ---------- ---------- ---------- MDLPRGLVVA WALSLWPGFT ENSBTAP00000011032/1-1171 ---------- ---------- ---------- ---------- -------GFT bmy_20492T0/1-867 ---------- ------MLFS VIYCDSERTQ GDMGQSLFLH ---SENLGFT BACU017963/1-1180 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015194/1-1218 DTFNMDIKKP RVIPGSRAAF FGYTVQQHDI SGKKWLVIGA PLETNGHQKT ENSP00000327290/1-1188 DTFNMDTRKP RVIPGSRTAF FGYTVQQHDI SGNKWLVVGA PLETNGYQKT ENSBTAP00000011032/1-1171 ATFNMDTKKP RVIPGSRAAF FGYTVQQHDI SGRKWLVVGA PLETNGHQKT bmy_20492T0/1-867 DTFNMDIKKP RVIPGSRAAF FGYTVQQHDI SGKKWLVIGA PLETNGHQKT BACU017963/1-1180 ------MPQP ---PGHQ--- LKDSCKVRNE ATHR-LVIGA PLETNGHQKT 101 150 ENSTTRP00000015194/1-1218 GDVYKCPVTQ GNCTKLNLGR VTLSNVSERK DNMRLGLSLA TNPKDNSFL- ENSP00000327290/1-1188 GDVYKCPVIH GNCTKLNLGR VTLSNVSERK DNMRLGLSLA TNPKDNSFL- ENSBTAP00000011032/1-1171 GDVYKCPVTQ GNCTKLNLGR VTLSNVSERK DNMRLGLSLA TNPKDNSFL- bmy_20492T0/1-867 GDVYKCPVTQ GNCTKLNLGN LGH------- ---------- ---------- BACU017963/1-1180 GDVYKCPVTQ GNCTKLNLGR VTLSNVSERK DNMRLGLSLA TNPKDNSFLG 151 200 ENSTTRP00000015194/1-1218 ---------- ---------- ----ACSPLW SHECGSSYYT TGMCSRVNSN ENSP00000327290/1-1188 ---------- ---------- ----ACSPLW SHECGSSYYT TGMCSRVNSN ENSBTAP00000011032/1-1171 ---------- ---------- ----ACSPLW SHECGSSYYT TGMCSRVNSN bmy_20492T0/1-867 ---------- ---------- ---------W SLHKEASHC- ---------- BACU017963/1-1180 EGESQPDDGV ENGTLEKTTK EDAKACSPLW SHECGSSYYT TGMCSRVNSN 201 250 ENSTTRP00000015194/1-1218 FRFSKTVAPA LQRCQTYMDI IIVLDGSNSI YPWVEVQHFL INILKKFYIG ENSP00000327290/1-1188 FRFSKTVAPA LQRCQTYMDI VIVLDGSNSI YPWVEVQHFL INILKKFYIG ENSBTAP00000011032/1-1171 FRFSKTVAPA LQRCQTYMDI VIVLDGSNSI YPWVEVQHFL INILKKFYIG bmy_20492T0/1-867 ---------- ---------- ---------- ---------- ---------- BACU017963/1-1180 FRFSKTVAPA LQRCQTYMDI IIVLDGSNSI YPWVEVQHFL INILKKFYIG 251 300 ENSTTRP00000015194/1-1218 PGQIQVGVVQ YGEDVVHEFH LNDYRSVKDV VEAASHIEQR GGTETRTAFG ENSP00000327290/1-1188 PGQIQVGVVQ YGEDVVHEFH LNDYRSVKDV VEAASHIEQR GGTETRTAFG ENSBTAP00000011032/1-1171 PGQIQVGVVQ YGEDVVHEFH LNDYRSVKDV VEAASHIEQR GGTETRTAFG bmy_20492T0/1-867 PG-------- ---------- ---------- ---------- ---------- BACU017963/1-1180 PGQIQVGVVQ YGEDVVHEFH LNDYRSVKDV VEAASHIEQR GGTETRTAFG 301 350 ENSTTRP00000015194/1-1218 IEFARSEAFQ KGGRKGAKNV MIVITDGESH DSPDLEEVIQ QSERDNVTRY ENSP00000327290/1-1188 IEFARSEAFQ KGGRKGAKKV MIVITDGESH DSPDLEKVIQ QSERDNVTRY ENSBTAP00000011032/1-1171 IEFARSEAFQ KGGRKGAKKV MIVITDGESH DSPDLEKVIQ QSERDNVTRY bmy_20492T0/1-867 -----SEAFQ KGGRKGAKKV MIVITDGESH DSPDLEKVIQ QSERDNVTRY BACU017963/1-1180 IEFARSEAFQ KGGRKGAKKV MIVITDGESH DSPDLEKVIQ QSERDNVTRY 351 400 ENSTTRP00000015194/1-1218 AVAVLGYYNR RGINPEAFLN EIKYIASDPD DKHFFNVTDE AALKDIVDAL ENSP00000327290/1-1188 AVAVLGYYNR RGINPETFLN EIKYIASDPD DKHFFNVTDE AALKDIVDAL ENSBTAP00000011032/1-1171 AVAVLGYYNR RGINPEAFLN EIKYIASDPD DKHFFNVTDE AALKDIVDAL bmy_20492T0/1-867 AVAVLGYYNR RGINPEAFLN EIKYIASDPD DKHFFNVTDE AALKDIVDAL BACU017963/1-1180 AVAVLGYYNR RGINPEAFLN EIKYIASDPD DKHFFNVTDE AALKDIVDAL 401 450 ENSTTRP00000015194/1-1218 GDRIFSLEGT NKNETSFGLE MSQTGFSSHI VEDGILLGAV GAYDWNGAVL ENSP00000327290/1-1188 GDRIFSLEGT NKNETSFGLE MSQTGFSSHV VEDGVLLGAV GAYDWNGAVL ENSBTAP00000011032/1-1171 GDRIFSLEGT NKNETSFGLE MSQTGFSSHV VEDGILLGAV GAYDWNGAVL bmy_20492T0/1-867 GDRIFSLEGT NKNETSFGLE MSQTGFSSHI VEDGILLGAV GAYDWNGAVL BACU017963/1-1180 GDRIFSLEGT NKNETSFGLE MSQTGFSSHI VEDGILLGAV GAYDWNGAVL 451 500 ENSTTRP00000015194/1-1218 KETSGGKVIP LRESYLKEFP EELKNHGAYL GYTVTSVVSS RQGRVYVAGA ENSP00000327290/1-1188 KETSAGKVIP LRESYLKEFP EELKNHGAYL GYTVTSVVSS RQGRVYVAGA ENSBTAP00000011032/1-1171 KETSSGKVIP LRESYLKEFP EELKNHGAYL GYTVTSVVSS RQGRVYVAGA bmy_20492T0/1-867 KETSGGKVIP LRESYLKEFP EELKNHGAYL GYTVTSVVSS RQGRVYVAGA BACU017963/1-1180 KETSGGKVIP LRESYLKEFP EELKNHGAYL GYTVTSVVSS RQGRVYVAGA 501 550 ENSTTRP00000015194/1-1218 PRFNHTGKVI LFTMHNNRSL TIHQALQGEQ XXXXXXXXXX XXXXXXXXXX ENSP00000327290/1-1188 PRFNHTGKVI LFTMHNNRSL TIHQAMRGQQ IGSYFGSEIT SVDIDGDGVT ENSBTAP00000011032/1-1171 PRFNHTGKVI LFTMHSNRSL TIHQALRGEQ IGSYYGSEIT SVDVDEDGVT bmy_20492T0/1-867 PRFNHTGKVI LFTMHNNRSL TIHQALQGEQ IGSYYGSEIT SVDVDGDGVT BACU017963/1-1180 PRFNHTGKVI LFTMHNNRSL TIHQALQGEQ IGSYYGSEIT SVDVDGDGVT 551 600 ENSTTRP00000015194/1-1218 XXXXXXXXXX XXXXXXXXXX XXXXXXXNRF VYDGTLKDSH SYQNARFGSS ENSP00000327290/1-1188 DVLLVGAPMY FNEGRERGKV YVYELRQNLF VYNGTLKDSH SYQNARFGSS ENSBTAP00000011032/1-1171 DVLLVGAPMY FSEGGERGRV YVYNLRQDRF VYNGTLKDSH GYQNARFGSS bmy_20492T0/1-867 DVLLVGAPMY FSEGGERGRV YIYNLRQNRF VYDGTLKDSH SYQNARFGSS BACU017963/1-1180 DVLLVGAPMY FSEGGERGRV YIYNLRQNRF VYDGTLKDSH SYQNARFGSS 601 650 ENSTTRP00000015194/1-1218 IASVQDLNQD SYNDVVVGAP LEDNHRGVIY IFHGFQGNIL KTPKQRISAS ENSP00000327290/1-1188 IASVRDLNQD SYNDVVVGAP LEDNHAGAIY IFHGFRGSIL KTPKQRITAS ENSBTAP00000011032/1-1171 IASVRDLNQD SYNDVVVGAP LEDNHGGVLY IYHGFQGSIL KTPKQRIPAS bmy_20492T0/1-867 IASVQDLNQD SYNDVVVGAP LEDNHRGVIY IFHGFQGSIL KTPKQRIAAS BACU017963/1-1180 IASVQDLNQD AYNDVVVGAP LEDSHRGVIY VFHGFQGSIL KTPKQRIAAS 651 700 ENSTTRP00000015194/1-1218 ELAPGLQYFG CSIHGQLDLD EDGLVDLTVG ALGNAVILWS RPVVQINASL ENSP00000327290/1-1188 ELATGLQYFG CSIHGQLDLN EDGLIDLAVG ALGNAVILWS RPVVQINASL ENSBTAP00000011032/1-1171 ELAPGLQYFG CSIHGQLDLD EDGLVDLAVG ALGNAVILWS RPVVQINASL bmy_20492T0/1-867 ELAPGLQYFG CSIHGQLDLD EDGLVDLAVG ALGNAVILWS RPVVQINASL BACU017963/1-1180 ELAPGLQYFG CSIHGQLDLD EDGLVDLAVG ALGNAVILWS RPVVQINASL 701 750 ENSTTRP00000015194/1-1218 HFEPSKINIF HRDCKRSGRD ATCLAAFLCF TPVFLAPHYQ TSTVGIRYNA ENSP00000327290/1-1188 HFEPSKINIF HRDCKRSGRD ATCLAAFLCF TPIFLAPHFQ TTTVGIRYNA ENSBTAP00000011032/1-1171 HFEPSKINIF HRDCKRSGRD ATCLAAFLCF TPVFLASHYQ TATVGIRYNA bmy_20492T0/1-867 HFEPSKINIF HRDCKRSGRD ATCLAAFLCF SPVFLAPHYQ TSTVGIRYNA BACU017963/1-1180 HFEPSKINIF HRDCKRSGRD ATCLAAFLCF SPVFLAPHYQ TSTVGIRYNA 751 800 ENSTTRP00000015194/1-1218 TMDERRYTPR AHLDEGGDRY TNRAALLSSS QEHCERINFH VLDTADYVKP ENSP00000327290/1-1188 TMDERRYTPR AHLDEGGDRF TNRAVLLSSG QELCERINFH VLDTADYVKP ENSBTAP00000011032/1-1171 TMDERRYTPR AHLDEGGDRY TNRAALLSSG QEHCERISFH VLDTADYVKP bmy_20492T0/1-867 TMDERRYTPR AHLDEGGDRY TNRAALLSSS QEHCERINFH VLDTADYVKP BACU017963/1-1180 TMDERRYTPR AHLDEGGDRY TNRAALLSSS QEHCERINFH VLDTADYVKP 801 850 ENSTTRP00000015194/1-1218 VTFSVEYSLE DPDYGPMLDD GWPTTLRVSV PFWNGCNEDE HCVPDLLLDA ENSP00000327290/1-1188 VTFSVEYSLE DPDHGPMLDD GWPTTLRVSV PFWNGCNEDE HCVPDLVLDA ENSBTAP00000011032/1-1171 VTFSIEYSLE DPDYGPMLDD GWPTTLRVSV PFWNGCNEDE HCVPDLLLDA bmy_20492T0/1-867 VTFSVEYSLE DPDYGPMLDD GWPTTLRVSV PFWNGCNEDE HCVPDLLLDA BACU017963/1-1180 VTFSVEYSLE DPDYGPMLDD GWPTTLRVSV PFWNGCNEDE HCVPDLLLDA 851 900 ENSTTRP00000015194/1-1218 RSDLPTAMEY CQRVLRKPAQ DCSAYTLSFD TTVFIIESTR RRVAVEALLE ENSP00000327290/1-1188 RSDLPTAMEY CQRVLRKPAQ DCSAYTLSFD TTVFIIESTR QRVAVEATLE ENSBTAP00000011032/1-1171 RSDLPTAMEY CQRVLRKPVQ DCSAYTLSFD AAVFVIESMR RRVAVEALLE bmy_20492T0/1-867 RSDLPTAMEY CQRVLRKPAQ DCSAYTLSFD TTVFIIESTR RRVAVEALLE BACU017963/1-1180 RSDLPTAMEY CQRVLRKPAQ DCSAYTLSFD TTVFIIESTR RRVAVEALLE 901 950 ENSTTRP00000015194/1-1218 NKGENAYSTV LNISQSANLQ FASLIQKDDS DGSIECVNEE KRLHKKVCNV ENSP00000327290/1-1188 NRGENAYSTV LNISQSANLQ FASLIQKEDS DGSIECVNEE RRLQKQVCNV ENSBTAP00000011032/1-1171 NKGENAYSTV LNISQSANLQ FASLIQKDDS DGSIECVNEE RRLHKKVCNV bmy_20492T0/1-867 NKGENAYSTV LNISQSANLQ FASLIQ---- ---------- ---------- BACU017963/1-1180 NKGENAYSTV LNISQSANLQ FASLIQKDDS DGNIECVNEE KRLHKKVCNV 951 1000 ENSTTRP00000015194/1-1218 SYPFFRAKAK VAFRLDFEFS KSVFLHHMEI QLTAGSDSDE EESTKEDNTA ENSP00000327290/1-1188 SYPFFRAKAK VAFRLDFEFS KSIFLHHLEI ELAAGSDSNE RDSTKEDNVA ENSBTAP00000011032/1-1171 SYPFFRAKAK VAFRLDFEFS KSIFLHHLEI QLTAGSDSDE EESTKEDNTA bmy_20492T0/1-867 ---------- ---------- ---------- ---------- ----KEDNTA BACU017963/1-1180 SYPFFRAKAK VAFRLDFEFS KSVFLHHMEI QLTAGSDSDE EESTKEDNTA 1001 1050 ENSTTRP00000015194/1-1218 LLRLHLKYEA DVLFTRSSSL SHYEVKPNSS LERYHGIGPP FNCVFKIQNL ENSP00000327290/1-1188 PLRFHLKYEA DVLFTRSSSL SHYEVKPNSS LERYDGIGPP FSCIFRIQNL ENSBTAP00000011032/1-1171 LLRFHLKYEA DVLFTRSSSL SHYEVKSNSS LERYHGIGPP FHCIFKIQNL bmy_20492T0/1-867 LLRLHLKYEA DVLFTRSSSL SHYEVKPNSS LERYHGIGPP FNCVFK---- BACU017963/1-1180 LLRLHLKYEA DVLFTRSSSL SHYEVKPNSS LERYHGIGPP FNCVFKIQNL 1051 1100 ENSTTRP00000015194/1-1218 GLFPIHGVMM KFTVPIATRG GNRLLLLKGF LADQANTSCN IWGNSTEYRH ENSP00000327290/1-1188 GLFPIHGMMM KITIPIATRS GNRLLKLRDF LTDEANTSCN IWGNSTEYRP ENSBTAP00000011032/1-1171 GLFPIHGVTM KITIPIATRG GNRLLLLRDF LTDQVNTSCN IWGNSTEYRR bmy_20492T0/1-867 ---------- ---------- ---------- ---------- ---------- BACU017963/1-1180 GLFPIHGVMM KFTVPIATRG GNRLLLLKGF FADQANTSCN IWGNSTEYRH 1101 1150 ENSTTRP00000015194/1-1218 APTEEDLSRA PQLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327290/1-1188 TPVEEDLRRA PQLNHSNSDV VSINCNIRLV PNQEINFHLL GNLWLRSLKA ENSBTAP00000011032/1-1171 APTEEDLSRT PQLNHSNSDV VSINCNVRLA PNQEINFHLL GNLWLRSLKA bmy_20492T0/1-867 ---------- ---NHSNADV VSINCNVRLA PNQEISFHLL GNLWLRSLKA BACU017963/1-1180 APTEEDLSRA PQLNHSNADV VSINCNVRLA PNQEISFHLL GNLWLRSLKA 1151 1200 ENSTTRP00000015194/1-1218 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXITFEISKQ EDSQIPIWII ENSP00000327290/1-1188 LKYKSMKIMV NAALQRQFHS PFIFREEDPS RQIVFEISKQ EDWQVPIWII ENSBTAP00000011032/1-1171 LKYKLMRITV HAALQRQFHS PFIFREEDPS RQITFEISKQ EDSQVPIWII bmy_20492T0/1-867 LKYKLMRITV HAALQRQFHS PFIFREEDPS RQFISDVA-- ---------- BACU017963/1-1180 LKYKLMRITV HAALQRQFHS PFIFREEDPS RQITFEISKQ EDSQIPIWII 1201 1250 ENSTTRP00000015194/1-1218 VGSSLGGLLL LALLVLALWK LGFFKSAKRR REPGLDPTPK VLE ENSP00000327290/1-1188 VGSTLGGLLL LALLVLALWK LGFFRSARRR REPGLDPTPK VLE ENSBTAP00000011032/1-1171 VGSTLGGLLL LALLVLALWK LGFFKSAKRR REPGLDPTPK VLE bmy_20492T0/1-867 --ASL----- ---------- ---------- ---------- --- BACU017963/1-1180 VGSSLGGLLL LALLVLALWK LGFFKSAKRR REPGLDPTPK VLE