KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:50 2014 Check: 00 .. Name: ENSTTRP00000002472/1-725 Len: 795 Check: 3977 Weight: 1.00 Name: ENSP00000264065/1-793 Len: 795 Check: 8567 Weight: 1.00 Name: ENSBTAP00000011043/1-793 Len: 795 Check: 4820 Weight: 1.00 Name: bmy_22518T0/1-464 Len: 795 Check: 6166 Weight: 1.00 Name: BACU014051/1-793 Len: 795 Check: 7001 Weight: 1.00 // 1 50 ENSTTRP00000002472/1-725 ---------- ---------- ---------- ---------- ---------- ENSP00000264065/1-793 MGVWLNKDDY IRDLKRIILC FLIVYMAILV GTDQDFYSLL GVSKTASSRE ENSBTAP00000011043/1-793 MGVWLNKDDY VRDLKRVMLF FLVMYMAILV GTDQDFYSLL GVSKTASSRE bmy_22518T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU014051/1-793 MGVWLNKDDY LRDLKRVMLC FLIVYMAILV GTDQDFYSLL GVSKTASSRE 51 100 ENSTTRP00000002472/1-725 ---------- --------NN PDAHSDFXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264065/1-793 IRQAFKKLAL KLHPDKNPNN PNAHGDF-LK INRAYEVLKD EDLRKKYDKY ENSBTAP00000011043/1-793 IRQAFKKLAL KLHPDKNPNN PNAHSDF-LK VNRAYEVLKD EDLRKKYDKY bmy_22518T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU014051/1-793 IRQAFKKLAL KLHPDKNPNN PDAHSDF-LK INRAYEVLKD EDLRKKYDKY 101 150 ENSTTRP00000002472/1-725 XXXXXXXXXX XQYESWNYYR YD-GIYDDDP EIITLDRREF DAAVNSGELW ENSP00000264065/1-793 GEKGLEDNQG GQYESWNYYR YDFGIYDDDP EIITLERREF DAAVNSGELW ENSBTAP00000011043/1-793 GEKGLADNQG GQYESWNYYR YDFGIYDDDP EIITLDRREF DAAVNSGELW bmy_22518T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU014051/1-793 GEKGLADNQG GQYESWNYYR YDFGIYDDDP EIITLDRREF DAAVNSGELW 151 200 ENSTTRP00000002472/1-725 FVNFYSPGCS HCHDLAPTWR DFAKEVDGLL RIGAVNCGDD RMLCRMKGVN ENSP00000264065/1-793 FVNFYSPGCS HCHDLAPTWR DFAKEVDGLL RIGAVNCGDD RMLCRMKGVN ENSBTAP00000011043/1-793 FVNFYSPGCS HCHDLAPTWR DFAKEVDGLL RIGAVNCGDD RMLCRMKGVN bmy_22518T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU014051/1-793 FVNFYSPGCS HCHDLAPTWR DFAKEVDGLL RIGAVNCGDD RMLCRMKGVN 201 250 ENSTTRP00000002472/1-725 SYPSLFIFRS GMAAVKYHGD RSKESLVNFA MQHVRSTVTE LWTGNFVNSI ENSP00000264065/1-793 SYPSLFIFRS GMAPVKYHGD RSKESLVSFA MQHVRSTVTE LWTGNFVNSI ENSBTAP00000011043/1-793 SYPSLFIFRS GMAAVKYHGD RSKESLMNFA MQHVRSTVTE LWTGNFVNSI bmy_22518T0/1-464 ---------- ---------- ---------- ---------- ---------- BACU014051/1-793 SYPSLFIFRS GMAAVKYHGD RSKESLVNFA MQHVRSTVTE LWTGNFVNSI 251 300 ENSTTRP00000002472/1-725 QTAFAAGIGW LITFCSKGRD CLTSQTRLRL SGMLXXXXXX XXXXXXXXXX ENSP00000264065/1-793 QTAFAAGIGW LITFCSKGGD CLTSQTRLRL SGMLDGLVNV GWMDCATQDN ENSBTAP00000011043/1-793 QTAFAAGIGW LITFCSEGSD CLTSQTRLRL SGMLDGLVNV GWVDCATQDN bmy_22518T0/1-464 ---------- ---------- ---------- ---------- --MDCATQDN BACU014051/1-793 QTAFAAGIGW LITFCSKGRD CLTSQTRLRL SGMLDGLVNV GWMDCATQDN 301 350 ENSTTRP00000002472/1-725 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264065/1-793 LCKSLDITTS TTAYFPPGAT LNNKEKNSIL FLNSLDAKEI YLEVIHNLPD ENSBTAP00000011043/1-793 LCKSLDITTS TTAYFPPGAT LNNKEKSGIL FLSSLDAKEI YLEIMHNLPD bmy_22518T0/1-464 LCKSLDITTS TTAYFPPGAT LNNKEKSGIL FLNSLDAKEI YLEIMHNLPD BACU014051/1-793 LCKSLDITTS TTAYFPPGAT LNNKEKSGIL FLNSLDAKEI YLEIMHNLPD 351 400 ENSTTRP00000002472/1-725 XXXXXXXXXX DRLAHHRWLL FFHFGKNENS NDPELKKLKT LLKNEHIQVG ENSP00000264065/1-793 FELLSANTLE DRLAHHRWLL FFHFGKNENS NDPELKKLKT LLKNDHIQVG ENSBTAP00000011043/1-793 FELLSANSLQ DRLAHHRWLL FFQFGQNENS NDPELKKLKT LLKNEHIQIG bmy_22518T0/1-464 FELLSANTLE DRLAHHRWLL FFHFGKNENS NDPELKKLKT LLKNEHIQVG BACU014051/1-793 FELLSANTLE DRLAHHRWLL FFHFGKNENS NDPELKKLKT LLKNEHIQVG 401 450 ENSTTRP00000002472/1-725 KFDCSSAPDI CSNLYVFQPC LAVFKGQGTK EFEIHHGKKI LYDILAFAKE ENSP00000264065/1-793 RFDCSSAPDI CSNLYVFQPS LAVFKGQGTK EYEIHHGKKI LYDILAFAKE ENSBTAP00000011043/1-793 KFDCSSAPDV CSNFYVFQPC LAVFKGQGTK EFEIHHGKKI LYDILAFAKE bmy_22518T0/1-464 KFDCSSAPDI CSNLYVFQPC LAVFKGQGTK EFEIHHGKKI LYDILAFAKE BACU014051/1-793 KFDCSSAPDI CSNLYVFQPC LAVFKGQGTK EFEIHHGKKI LYDILAFAKE 451 500 ENSTTRP00000002472/1-725 SVNSHVTTLG PQNFPANDKE PWLVDFFAPW CPPCRALLPE LRKASKHLYG ENSP00000264065/1-793 SVNSHVTTLG PQNFPANDKE PWLVDFFAPW CPPCRALLPE LRRASNLLYG ENSBTAP00000011043/1-793 SVNSHVTTLG PQNFPANEKE PWLVDFFAPW CPPCQALLPE LRKASKHLYG bmy_22518T0/1-464 SVNSHVTTLG PQNFPANDKE PWLVDFFAPW CPPCRALLPE LRKASKHLYG BACU014051/1-793 SVNSHVTTLG PQNFPANDKE PWLVDFFAPW CPPCRALLPE LRKASKHLYG 501 550 ENSTTRP00000002472/1-725 QLKFGTLDCT VHEGLCNMYN IQAYPTTVVF NQSNIHEYEG HHSAEQILEF ENSP00000264065/1-793 QLKFGTLDCT VHEGLCNMYN IQAYPTTVVF NQSNIHEYEG HHSAEQILEF ENSBTAP00000011043/1-793 QLKFGTLDCT VHEGLCNMYN IQAYPTTVVF NQSNIHEYEG HHSAEQILEF bmy_22518T0/1-464 QLKFGTLDCT VHEGLCNMYN IQAYPTTVVF NQSNIHEYEG HHSAEQILEF BACU014051/1-793 QLKFGTLDCT VHEGLCNMYN IQAYPTTVVF NQSNIHEYEG HHSAEQILEF 551 600 ENSTTRP00000002472/1-725 VEDLMNPSVI SLTPTTFNEL VKQRKH-DEV WMVDFYSPWC HPCQVLMPEW ENSP00000264065/1-793 IEDLMNPSVV SLTPTTFNEL VTQRKH-NEV WMVDFYSPWC HPCQVLMPEW ENSBTAP00000011043/1-793 VEDLMNPSVI SLTPTTFNEL VKQRKH-DEV WMVDFYSPWC HPCQVLMPEW bmy_22518T0/1-464 VEVEL-PQII SF-------- ---RSHIDEI ---------- ---------- BACU014051/1-793 VEDLMNPSVI SLTPTTFNEL VKQRKH-DEV WMVDFYSPWC HPCQVLMPEW 601 650 ENSTTRP00000002472/1-725 KRMARTLTGL INVGSINCQQ YHSFCSQENV RRYPEIRFFP PKSNKAYQYH ENSP00000264065/1-793 KRMARTLTGL INVGSIDCQQ YHSFCAQENV QRYPEIRFFP PKSNKAYHYH ENSBTAP00000011043/1-793 KRMARTLIGL INVGSIDCQQ YHSFCAQENV RRYPEIRFFP QKSNKAYEYH bmy_22518T0/1-464 ----ATLTGL INVGSIDCQQ YHSFCSQENV RRYPEIRXFP PKSNKAYQYH BACU014051/1-793 KRMARTLTGL INVGSIDCQQ YHSFCSQENV RRYPEIRFFP PKSNKAYQYH 651 700 ENSTTRP00000002472/1-725 SYNGWNRDAY SLRIWGLGFL PQASIDLTPQ TFNEKVLQGK NHWVVDFYAP ENSP00000264065/1-793 SYNGWNRDAY SLRIWGLGFL PQVSTDLTPQ TFSEKVLQGK NHWVIDFYAP ENSBTAP00000011043/1-793 SYNGWNRDAY SLRIWGLGFL PQASIDLTPQ TFNEKVLQGK NHWVVDFYAP bmy_22518T0/1-464 SYNGWNRDAY SLRIWGLGFL PQASIDLTPQ TFNEKVLQGK NHWVVDFYAP BACU014051/1-793 SYNGWNRDAY SLRIWGLGFL PQASIDLTPQ TFNEKVLQGK NHWVVDFYAP 701 750 ENSTTRP00000002472/1-725 WCGPCQNFAP EFELLARMIK GKVKAGKVDC QAYAQTCQKA GIRAYPTVKF ENSP00000264065/1-793 WCGPCQNFAP EFELLARMIK GKVKAGKVDC QAYAQTCQKA GIRAYPTVKF ENSBTAP00000011043/1-793 WCGPCQNFAP EFELLARTLK GKVKAGKVDC QAYAQTCQKA GIRAYPTVRL bmy_22518T0/1-464 WCGPCQNFAP EFELLARMIK GKVKAGKVDC QAYAQTCQKA GIRAYPTVKF BACU014051/1-793 WCGPCQNFAP EFELLARMIK GKVKAGKVDC QAYAQTCQKA GIRAYPTVKF 751 800 ENSTTRP00000002472/1-725 YPYERAKRNT WGEEIDSRDA KEITTLIYEK LENLQNHGKR NKDEL ENSP00000264065/1-793 YFYERAKRNF QEEQINTRDA KAIAALISEK LETLRNQGKR NKDEL ENSBTAP00000011043/1-793 YPYERAKRNT WGEQIDSRDA KEIATLIYEK LEKLQNHEKR DKDEL bmy_22518T0/1-464 YPYERAKRNT WGEQIDSRDA KEITTLIYEK LENLQNHGKR NK--- BACU014051/1-793 YPYERAKRNT WGEQIDSRDA KEITTLIYEK LENLQNHGKR NKDEL