KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:51 2014 Check: 00 .. Name: ENSTTRP00000003790/1-248 Len: 375 Check: 5163 Weight: 1.00 Name: ENSP00000390478/1-369 Len: 375 Check: 4823 Weight: 1.00 Name: bmy_05975T0/1-365 Len: 375 Check: 1242 Weight: 1.00 Name: ENSBTAP00000011063/1-315 Len: 375 Check: 4477 Weight: 1.00 // 1 50 ENSTTRP00000003790/1-248 -SLGAGRSVP RASSQP---- ---------- ---------- -PCPGLPSTC ENSP00000390478/1-369 MGPGARRQGR IVQGRPEMCF CPPPTPLPPL RILTLGTHTP TPCSSPGSAA bmy_05975T0/1-365 MGPGAQQQCL PVQGRPEGCS CPPHLPYP-- --LSLGTHTH PPPHAPPQAQ ENSBTAP00000011063/1-315 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003790/1-248 RLHCPCENIP MSKGPQAETF VFLDLEATGL PSVDPKIAE- SPFAIHRSSL ENSP00000390478/1-369 GTYPTMGSQA LPPGP-MQTL IFFDMEATGL PFSQPKVTEL CLLAVHRCAL bmy_05975T0/1-365 RQIPTMGSQA LPPGP-VQTL IFLDLEATGL PFSQPKVTEL CLLAIHRWAL ENSBTAP00000011063/1-315 -----MGSRA LPPGP-VQTL IFLDLEATGL PFSQPKITEL CLLAVHRYAL 101 150 ENSTTRP00000003790/1-248 EN---PKRDE SDAPVLPQVP DELTLCMSPE CPFTAKASEI TGVSSEGLAR ENSP00000390478/1-369 ESPPTSQGPP PTVPPPPRVV DKLSLCVAPG KACSPAASEI TGLSTAVLAA bmy_05975T0/1-365 ERLPTPQGPP STVPPPPRVL DKLSLCVAPG KACSPAASEI TGLSTAVLAA ENSBTAP00000011063/1-315 EGLSAPQGPS PTAPVPPRVL DKLSLCVAPG KVCSPAASEI TGLSTAVLAA 151 200 ENSTTRP00000003790/1-248 CQEAGFDSAV VRTPQAFLSY QEGPLCLVAH NGFDYDFPLL CTE------- ENSP00000390478/1-369 HGRQCFDDNL ANLLLAFLRR QPQPWCLVAH NGDRYDFPLL QAELAMLGLT bmy_05975T0/1-365 HGRQCFDANL ANMLQAFLQR QPQPWCLVAH NGDRYDFPLL QAELAVLGLA ENSBTAP00000011063/1-315 HGRRAFDADL VNLIRTFLQR QPQPWCLVAH NGDRYDFPLL RAELALLGLA 201 250 ENSTTRP00000003790/1-248 -------CLG TLPVPRGLDH AHS---HGTR AQGGKGYSLG SLF-RCYVQA ENSP00000390478/1-369 SALDGAFCVD SITALKALER ASSPSEHGPR ----KSYSLG SIYTRLYGQS bmy_05975T0/1-365 SALDGAFCVD SIAALKALEQ AGSPSEHGPR ----KSYSLG SIYMRLYGQA ENSBTAP00000011063/1-315 SALDDAFCVD SITALKALEP TGSSSEHGPR ----KSYSLG SVYTRLYGQA 251 300 ENSTTRP00000003790/1-248 ------AEGH VHTRLMFLH- RAAELLAWAD EHALSWARVE PM-------- ENSP00000390478/1-369 PPDSHTAEGD VLALLSICQW RPQALLRWVD AHARPFGTIR PMYGVTASAR bmy_05975T0/1-365 PPDSHTAEGD VLALLSICQW RPQALLRWVD AHARPFSTVK PMYVVTASTG ENSBTAP00000011063/1-315 PPDSHTAEGD VLALLSVCQW RPRALLRWVD AHAKPFSTVK PMYVITTSTG 301 350 ENSTTRP00000003790/1-248 ---------- ---------- ---------- -DVP-----P DGPSLKA--- ENSP00000390478/1-369 TKPRPSAVTT TAHLATTRNT SPSLGESRGT KDLP-PVKDP GALSREGLLA bmy_05975T0/1-365 TSPRPSAATA TVPLARTRDT SPNRGGNRNP KPLS-PVKSP GAPPREGLLA ENSBTAP00000011063/1-315 TNPRPSAVTA TVPLARASDT GPNLRGDRSP KPAPSPKMCP GAPPGEGLLA 351 400 ENSTTRP00000003790/1-248 ---------- ---------- ----- ENSP00000390478/1-369 PLGLLAILTL AVATLYGLSL ATPGE bmy_05975T0/1-365 PLGLLAFLTL AVATLYRLSL AIPGQ ENSBTAP00000011063/1-315 PLGLLAFLTL AVAMLYGLSL AMPGQ