KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:51 2014 Check: 00 .. Name: ENSP00000321735/1-504 Len: 505 Check: 9468 Weight: 1.00 Name: ENSBTAP00000011068/1-475 Len: 505 Check: 7715 Weight: 1.00 Name: ENSTTRP00000005299/1-496 Len: 505 Check: 5082 Weight: 1.00 Name: bmy_01129T0/1-499 Len: 505 Check: 5890 Weight: 1.00 Name: BACU013356/1-337 Len: 505 Check: 7889 Weight: 1.00 // 1 50 ENSP00000321735/1-504 MGAGGPRRGE GPPDGGWGWV VLGACFVVTG FAYGFPKAVS VFFRALMRDF ENSBTAP00000011068/1-475 MGASGPRRGP GPPDGGWGWA VLGACFVITG FAYGFPKAVS VFFRALMRDF ENSTTRP00000005299/1-496 MGTRGPRRGP GPPDGGWGWA VLGACFVVTG FAYGFPKAVS VFFRALMRDF bmy_01129T0/1-499 MGTRGPRRGP GPPDGGWGWA VLGACFVVTG FAYGFPKAVS VFFRALMRDF BACU013356/1-337 MGTRGPRRGP GPPDGGWGWA VLGACFVVTG FAYGFPKAVS VFFRALMRDF 51 100 ENSP00000321735/1-504 DAGYSDTAWV SSIMLAMLYG TGPVSSILVT RFGCRPVMLA GGLLASAGMI ENSBTAP00000011068/1-475 GAGYSDTAWV SSIMLAMLYG TGPVSSILVT RFGCRPVMLV GGLLASAGMI ENSTTRP00000005299/1-496 GAGYSDTAWV SSIMLAMLYG TAQVSSILVT RLGCRPVMLV GGL--AAGMV bmy_01129T0/1-499 GAGYSDTAWV SSIMLAMLYG TGPVSSILVT RFGCRPVMLV GGLLASAGMV BACU013356/1-337 GAGYSDTAWV SSIMLAMLYG TGPVSSILVT RFGCRPVMLV GGLLASAGMV 101 150 ENSP00000321735/1-504 LASFATRLLE LYLTAGVLTG LGLALNFQPS LIMLGLYFER RRPLANGLAA ENSBTAP00000011068/1-475 LASFATRLLE LYLTAGVLTG LGLALNFQPS LIMLGLYFER RRPLANGLAA ENSTTRP00000005299/1-496 LASFATRLLE LYLTAGVLTG LGLALNFQPS LIMLGLYFER RRPLANGLAA bmy_01129T0/1-499 LASFATRLLE LYLTAGVLTG LGLALNFQPS LIMLGLYFER RRPLANGLAA BACU013356/1-337 LASFATRLLE LYLTAGVLTG LGLALNFQPS LIMLGLYFER RRPLANGLAA 151 200 ENSP00000321735/1-504 AGSPVFLSAL SPLGQQLLER FGWRGGFLLL GGLLLHCCAC GAVMRPPPGP ENSBTAP00000011068/1-475 AGSPVFLSAL SPLGQQLLEH FGWRGGFLLL GGLLLNCCAC GAVMRPPPGP ENSTTRP00000005299/1-496 AGSPVFLSAL SPLGQQLLEH FGWRGGFLLL GGLLLHCCAC GAVMRPPPGP bmy_01129T0/1-499 AGSPVFLSAL SPLGQQLLEH FGWRGGFLLL GGLLLHCCAC GAVMRPPPGP BACU013356/1-337 AGSPVFL--- ---------- ---------- ---------- ---------- 201 250 ENSP00000321735/1-504 GPRPRRDSAG DRAGDAPGEA EADGAGLQLR EASPRVRPRR RLLDLAVCTD ENSBTAP00000011068/1-475 GPR------- ---------- --------VR EAPSGGRTRR RLLDVTVCAD ENSTTRP00000005299/1-496 RPRR------ NSAGDAPGEA EADSAGLRLR EAPSGGRTRR RLLDVTVCTD bmy_01129T0/1-499 RPRR------ NSAGDAPGEA EADSAGLRLR EAPSGGRTRR RLLDVTVCTD BACU013356/1-337 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000321735/1-504 RAFAVYAVTK FLMALGLFVP AILLVNYAKD AGVPDTDAAF LLSIVGFVDI ENSBTAP00000011068/1-475 RAFAVYAVTK FLMALGLFVP AILLVNYAKD AGVPDSEAAF LLSIVGFVDI ENSTTRP00000005299/1-496 RAFAVYAVTK FLMALGLFVP AILLVNYAKD AGVPDSEAAF LLSIVGFVDI bmy_01129T0/1-499 RAFAVYAVTK FLMALGLFVP AILLVNYAKD AGVPDSEAAF LLSIVGFVDI BACU013356/1-337 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000321735/1-504 VARPACGALA GLARLRPHVP YLFSLALLAN GLTDLSSARA RSYGALVAFC ENSBTAP00000011068/1-475 VARPACGALA GLARLRPHVA YLFSLALMAN GLTDLSSARA RSYSALVAFC ENSTTRP00000005299/1-496 VARPACGALA GLARLRPHVA YLFSLALMAN GLTDLSSARA RTYGALVSFC bmy_01129T0/1-499 VARPACGALA GLARLRPHVA YLFSLALMAN GLTDLSSARA RTYGALVAFC BACU013356/1-337 ---------- ---------- ----LALMAN GLTDLSSARA RTYGALVAFC 351 400 ENSP00000321735/1-504 VAFGLSYGMV GALQFEVLMA AVGAPRFPSA LGLVLLVEAA AVLIGPPSAG ENSBTAP00000011068/1-475 IAFGLSYGMV GALQFEVLMA AVGAPRFPSA LGLVLLLEAV AVLIGPPSAG ENSTTRP00000005299/1-496 VAFGLSYGMV GALQFEVLMA AVGAARFPSA LGLVLLLEAV AVLIGPPSAG bmy_01129T0/1-499 IAFGLSYGMV GALQFEVLMA AVGAPRFPSA LGLVLLLEAV AVLIGPPSAG BACU013356/1-337 VAFGLSYGMV GALQFEVLMA AVGAPRFPSA LGLVLLLEAV AVLIGPPSAG 401 450 ENSP00000321735/1-504 RLVDVLKNYE IIFYLAGSEV ALAGVFMAVA TNCCLRCAKA APSGPGTEGG ENSBTAP00000011068/1-475 RLVDALKNYE IIFYLAGSEV ALAGIFMAVA TNCCLRRPRD GPPSPGTEGG ENSTTRP00000005299/1-496 RLVDALKNYE IIFYLAGSEV ALAGVFMAVA TKCCLRRSQD ATPSPGTKGG bmy_01129T0/1-499 RLVDTLKNYE IIFYLAGSEV ALAGIFMAVA TKCCLRRSQD ATPSPGTKGG BACU013356/1-337 RLVDALKNYE IIFYLAGSEV ALAGIFMAVA TKCCLRRSQD ATPSPATKGG 451 500 ENSP00000321735/1-504 ASDTEDAEAE GDSEPLPVVA EE-PGNLEAL EVLSARGEPT EPEIEARPRL ENSBTAP00000011068/1-475 AGDGEEAEAE VDSDLPPAGT EE-PGGLEAV EVPSPGTGPS QPEVKMEPGL ENSTTRP00000005299/1-496 ASDTEDAEAE VDSEPLPTSA EE-PGGLEAL AVPSPGTGPS EPEMEAEPGL bmy_01129T0/1-499 ASDTEDAEAE VDSEPLPTGA AAEPGGLEAP EVRSPGTGPS EPEMEAEPGL BACU013356/1-337 ASDTEDAEAE VDSEPLPASA VE-PGGLEAP EVPSPGTGPS EPETEAEPGL 501 550 ENSP00000321735/1-504 AAESV ENSBTAP00000011068/1-475 D---- ENSTTRP00000005299/1-496 DSESV bmy_01129T0/1-499 DSESV BACU013356/1-337 DSESV