KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:52 2014 Check: 00 .. Name: ENSTTRP00000011246/1-494 Len: 553 Check: 9841 Weight: 1.00 Name: ENSBTAP00000011069/1-499 Len: 553 Check: 5029 Weight: 1.00 Name: ENSP00000326706/1-490 Len: 553 Check: 8504 Weight: 1.00 Name: bmy_15376T0/1-548 Len: 553 Check: 2849 Weight: 1.00 Name: BACU001058/1-494 Len: 553 Check: 1728 Weight: 1.00 // 1 50 ENSTTRP00000011246/1-494 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011069/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000326706/1-490 ---------- ---------- ---------- ---------- ---------- bmy_15376T0/1-548 APPEVSWAPG SQRDRTHRAA ARPAVDGGNG DRAAPGVSGR AVERPDLSGL BACU001058/1-494 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011246/1-494 -MEEEGVKEG GQKPRGAQTA DKAGWIKKSS GGFLGLWKDR YLLLCQAQLL ENSBTAP00000011069/1-499 -MEEEGVKEG GQKPRSAQTA DKAGWIKKSS GGFLGLWKDR YLLLCQAQLL ENSP00000326706/1-490 -MEEEGVKEA GEKPRGAQMV DKAGWIKKSS GGLLGFWKDR YLLLCQAQLL bmy_15376T0/1-548 VMEEEGVKEG GQKPRGAQTA DKAGWIKKSS GGFLGLWKDR YLLLCQAQLL BACU001058/1-494 DAMLQGVKEG GQKPRGAQTA DKAGWIKKSS GGFLGLWKDR YLLLCQAQLL 101 150 ENSTTRP00000011246/1-494 VYENEDEQKC VETVELGSYE KCQDLRALLK RKHRFILLRS PGNKXXXXXX ENSBTAP00000011069/1-499 VYENEDEQKC VETVELGSYE KCQDLRALLK RKHRFILLRS PGNKVSDIKF ENSP00000326706/1-490 VYENEDDQKC VETVELGSYE KCQDLRALLK RKHRFILLRS PGNKVSDIKF bmy_15376T0/1-548 -----DEQKC VETVELGSYE KCQDLRALLK RKHRFILLRS PGNKVSDIKF BACU001058/1-494 VYENEDEQKC VETVELGSYE KCQDLRALLK RKHRFILLRS PGNKVSDIKF 151 200 ENSTTRP00000011246/1-494 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV KVDKSCALEH VTRDRVRGGQ ENSBTAP00000011069/1-499 QAPSGEEKES WIKALNEGIN RGKNKAFDEV KVDKSCVLEH VTRDRVRRDQ ENSP00000326706/1-490 QAPTGEEKES WIKALNEGIN RGKNKAFDEV KVDKSCALEH VTRDRVRGGQ bmy_15376T0/1-548 QAPNGEEKES WIKALNEGIN RGKNKAFDEV KVDKSCALEH VTRDRVRGGQ BACU001058/1-494 QAPNGEEKES WIKALNEGIN RGKNKAFDEV KVDKSCALEH VTRGRVRGGQ 201 250 ENSTTRP00000011246/1-494 RRRPPTRVHL KEVASAASDG LSRLDLDVPD SGLPVFAPSN DVRAAQPRET ENSBTAP00000011069/1-499 RRRPPTRVHL KEVANAASDG LSRLDLDVPD SGPPVLAPSN DVDAAQPRET ENSP00000326706/1-490 RRRPPTRVHL KEVASAASDG LLRLDLDVPD SGPPVFAPSN HVSEAQPRET bmy_15376T0/1-548 RRRPPTRVHL KEVASAASDG LSRLDLDVPD SGLPVFAPSN DVSAAQPRET BACU001058/1-494 RRRPPTRVHL KEVASAASDG LSRLDLDVPD SGLPVFAPSN DVSAAQPRET 251 300 ENSTTRP00000011246/1-494 PRPPMPPTKP SAAPETTSLG DGVETPVGER ASTPVPASSE AHPESREDSE ENSBTAP00000011069/1-499 PRPPMPPAKP SPAPETSSAG DRMETPVGQS APAPVPASSE AHPESQEDLE ENSP00000326706/1-490 PRPLMPPTKP FLAPETTSPG DRVETPVGER APTPVSASSE VSPESQEDSE bmy_15376T0/1-548 PRPPMPPTKP SAAPETTSLG DGVETPVGER ASTPVPASSE AHPESREDSE BACU001058/1-494 PRPPMPPTKP SAAPETTSLG DGVETPVGER ASTPVPASSE AHPESREDSE 301 350 ENSTTRP00000011246/1-494 TPVGEDRGSE QPPSRVLPDK LKVSWESPSP EEPPDPESTE PPQVPDSGTS ENSBTAP00000011069/1-499 TPVVEDSDSE QPPNRILPDK LKVSWENPSP EEAPDSESAE PPQVPGAETS ENSP00000326706/1-490 TPAEEDSGSE QPPNSVLPDK LKVSWENPSP QEAPAAESAE PSQAPCSETS bmy_15376T0/1-548 TPVGEDRGSE QPPNRVLPDK LKVSWESPSP EEPPAPESTE PPQVPDSGTS BACU001058/1-494 TPVGEDRGSE QPPNRVLPDK LKVSWESPSP EEPPDPESTE PPQVPDSGTS 351 400 ENSTTRP00000011246/1-494 KAVPREGGKP APPPTPPAKI LSEKLRASMS GVQASGL--- -----XXXXX ENSBTAP00000011069/1-499 EAGPREGGK- --PPTPPPKI LSEKLKASMS GMEASGPAQS PGASEASAPG ENSP00000326706/1-490 EAAPREGGK- --PPTPPPKI LSEKLKASMG EMQASGP--- ------PAPG bmy_15376T0/1-548 KAVPREGGKP PPPPTPPPKI LSEKLRASMS GVQASGPAQS PGASETSAQG BACU001058/1-494 KAVPREGGK- --PPTPPPKI LSEKLRASMS GMQASGPAQS PGASETSAQG 401 450 ENSTTRP00000011246/1-494 XXXXXXXXXX XXXXXXXXXX XXXXXXTCPK DATTSTALPH WEPQPQFHPR ENSBTAP00000011069/1-499 PAEVSVNGVD DSPEPLQSSQ AAGPPGTPPK AATTSTALPP WDPQPQLHPR ENSP00000326706/1-490 TVQVSVNGMD DSPEPAKPSQ AEGTPGTPPK DATTSTALPP WDLPPQFHPR bmy_15376T0/1-548 PAQVSVNGMD DSPEPIKPSQ DAGTPGTLPK DATTSTALPR WDPQPQFHPR BACU001058/1-494 PAQVSVNGMD DSPEPIKPSQ DAGTPGTPPK DATTSTALPR WDLQPQFHPR 451 500 ENSTTRP00000011246/1-494 CSSLGDLLGE GPRRPRKPGE QLYRAQLEVK VASEQTEKLL NKVLGSEPAA ENSBTAP00000011069/1-499 CSSLGDLLGE GPRRRRQPGE QLHRAQLEVK VASEKTEKLL NKVLGGESAS ENSP00000326706/1-490 CSSLGDLLGE GPRHPLQPRE RLYRAQLEVK VASEQTEKLL NKVLGSEPAP bmy_15376T0/1-548 CSSLGDLLGE GPRRPRQPGE QLYRAQLEVK VASEQTEKLL NKVLGSKPAA BACU001058/1-494 CSSLGDLLGE GPRRPRQPGE QLYRAQLEVK VASEQTEKLL NKVLG----- 501 550 ENSTTRP00000011246/1-494 GNAEALLSQA VEQLRQATQA LQEIRDLGEL SQEAPGLREK RKELVTLYRR ENSBTAP00000011069/1-499 VNAETLLSQA VEQLRQATQV LQEIRDLEEM NREAPGLREK RRELVTLYRR ENSP00000326706/1-490 VSAETLLSQA VEQLRQATQV LQEMRDLGEL SQEAPGLREK RKELVTLYRR bmy_15376T0/1-548 GNAEALLSQA VEQLRQATQV LQEIRDLGEL SQEAPGLREK RKELVTLYRR BACU001058/1-494 -NAEALLSQA VEQLRQATQV LQEIRDLGEL SQEAPGLREK RKELVTLYRR 551 600 ENSTTRP00000011246/1-494 SAP ENSBTAP00000011069/1-499 SVP ENSP00000326706/1-490 SAP bmy_15376T0/1-548 SAP BACU001058/1-494 SAP