KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:53 2014 Check: 00 .. Name: ENSTTRP00000016415/1-1073 Len: 1130 Check: 3043 Weight: 1.00 Name: ENSP00000265069/1-1074 Len: 1130 Check: 8061 Weight: 1.00 Name: bmy_17018T0/1-742 Len: 1130 Check: 8841 Weight: 1.00 Name: BACU015040/1-992 Len: 1130 Check: 2868 Weight: 1.00 Name: ENSBTAP00000011072/1-1030 Len: 1130 Check: 8115 Weight: 1.00 // 1 50 ENSTTRP00000016415/1-1073 MIPICPVVSF TYXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQQPA ENSP00000265069/1-1074 MIPICPVVSF TYVPSRLGED AKMATGNYFG FTHSGAAAAA AAAQYSQQPA bmy_17018T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU015040/1-992 ---------- ---------- ---------- ---------- ---QYSQQPA ENSBTAP00000011072/1-1030 ---------- ---------- ---------- ---------- ---QYSQQPA 51 100 ENSTTRP00000016415/1-1073 SGVAYSHPTT VASYTVHQAP VAAHTVTAAY APAAATVAVA RPAPVAVAAA ENSP00000265069/1-1074 SGVAYSHPTT VASYTVHQAP VAAHTVTAAY APAAATVAVA RPAPVAVAAA bmy_17018T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU015040/1-992 SGVAYSHPTT VASYTVHQAP VAAHTVTAAY APAAATVAVA RPAPVAVAAA ENSBTAP00000011072/1-1030 SGVAYSHPTT VASYTVHQAP VAAHTVTAAY APAAATVAVA RPAPVAVAAA 101 150 ENSTTRP00000016415/1-1073 ATAAAYGGYP TAHTATDYGY TQRQQEAPPP PPPATTQNYQ DSYSYVRSTA ENSP00000265069/1-1074 ATAAAYGGYP TAHTATDYGY TQRQQEAPPP PPPATTQNYQ DSYSYVRSTA bmy_17018T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU015040/1-992 ATAAAYGGYP TAHTATDYGY TQRQQEAPPP PPPATTQNYQ DSYSYVRSTA ENSBTAP00000011072/1-1030 ATAAAYGGYP TAHTATDYGY TQRQQEAPPP PPPATTQNYQ DSYSYVRSTA 151 200 ENSTTRP00000016415/1-1073 PAVAYDSKQY YQQPTATAAA VAAAAQPQPS VAETYYQTAP KAGYSQGATQ ENSP00000265069/1-1074 PAVAYDSKQY YQQPTATAAA VAAAAQPQPS VAETYYQTAP KAGYSQGATQ bmy_17018T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU015040/1-992 PAVAYDSKQY YQQPTATAAA VAAAAQPQPS VAETYYQTAP KAGYSQGATQ ENSBTAP00000011072/1-1030 PAVAYDSKQY YQQPTATAAA VAAAAQPQPS VAETYYQTAP KAGYSQGATQ 201 250 ENSTTRP00000016415/1-1073 YTQAQQTRQV TAIKPATPSP ATTTFSIYPV SSTVQPVAAA ATVVPSYTQS ENSP00000265069/1-1074 YTQAQQTRQV TAIKPATPSP ATTTFSIYPV SSTVQPVAAA ATVVPSYTQS bmy_17018T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU015040/1-992 YTQAQQTRQV TAIKPATPSP ATTTFSIYPV SSTVQPVAAA ATVVPSYTQS ENSBTAP00000011072/1-1030 YTQAQQTRQV TAIKPATPSP ATTTFSIYPV SSTVQPVAAA ATVVPSYTQS 251 300 ENSTTRP00000016415/1-1073 ATYSTTAVTY SGTSYSGYEA AVYSAASSYY QQQQQQQKQA AAAAAAAAAT ENSP00000265069/1-1074 ATYSTTAVTY SGTSYSGYEA AVYSAASSYY QQQQQQQKQA AAAAAAAAAT bmy_17018T0/1-742 ---------- --TSYSGYEA AVYSAASSYY QQQQQQQKQA AAAAAAAAAT BACU015040/1-992 ATYSTTAVTY SGTSYSGYEA AVYSAASSYY QQQQQQQKQA AAAAAAAAAT ENSBTAP00000011072/1-1030 ATYSTTAVTY SGTSYSGYEA AVYSAASSYY QQQQQQQKQA AAAAAAAAAT 301 350 ENSTTRP00000016415/1-1073 AAWTGTTFTK KAPFQNKQLK PKQPPKPPQI HYCDVCKISC AGPQTYKEHL ENSP00000265069/1-1074 AAWTGTTFTK KAPFQNKQLK PKQPPKPPQI HYCDVCKISC AGPQTYKEHL bmy_17018T0/1-742 AAWTGTTFTK KAPFQNKQLK PKQPPKPPQI HYCDVCKISC AGPQTYKEHL BACU015040/1-992 AAWTGTTFTK KAPFQNKQLK PKQPPKPPQI HYCDVCKISC AGPQTYKEHL ENSBTAP00000011072/1-1030 AAWTGTTFTK KAPFQNKQLK PKQPPKPPQI HYCDVCKISC AGPQTYKEHL 351 400 ENSTTRP00000016415/1-1073 EGQKHKKKEA ALKASQNTSS SNNSTRGTQN QLRCELCDVS CTGADAYAAH ENSP00000265069/1-1074 EGQKHKKKEA ALKASQNTSS SNSSTRGTQN QLRCELCDVS CTGADAYAAH bmy_17018T0/1-742 EGQKHKKKEA ALKASQNTSS SNNSTRGTQN QLRCELCDVS CTGADAYAAH BACU015040/1-992 EGQKHKKKEA ALKASQNTSS SNNSTRGTQN QLRCELCDVS CTGADAYAAH ENSBTAP00000011072/1-1030 EGQKHKKKEA ALKASQNTSS SNNSTRGTQN QLRCELCDVS CTGADAYAAH 401 450 ENSTTRP00000016415/1-1073 IRGAKHQKVV KLHTKLGKPI PSTEPNVVSQ ATSSTAVSAS KPTASPSSIA ENSP00000265069/1-1074 IRGAKHQKVV KLHTKLGKPI PSTEPNVVSQ ATSSTAVSAS KPTASPSSIA bmy_17018T0/1-742 IRGAKHQKVV KLHTKLGKPI PSTEPNVVSQ ATSSTAVSAS KPTASPSSIA BACU015040/1-992 IRGAKHQKVV KLHTKLGKPI PSTEPNVVSQ ATSSTAVSAS KPTASPSSIA ENSBTAP00000011072/1-1030 IRGAKHQKVV KLHTKLGKPI PSTEPNVVSQ ATSSTAVSAS KPTASPSSIA 451 500 ENSTTRP00000016415/1-1073 ASNCTVNTSS IATSSVKGLT TTGNSSLNST ANAKVSAVPA NMAAKKTSTP ENSP00000265069/1-1074 ANNCTVNTSS VATSSMKGLT TTGNSSLNST SNTKVSAVPT NMAAKKTSTP bmy_17018T0/1-742 ASNCTVNTSS IATSSVKGLT TTGNSSLNST ANTKVSAVPA NMAAKKTSTP BACU015040/1-992 ASNCTVNTSS IATSSVK--- ---------- ---------- ---------- ENSBTAP00000011072/1-1030 ASNCTVNTSS IATSSVKGLT TTGNSSLNST ANTKVSAVPA NMAAKKTSTP 501 550 ENSTTRP00000016415/1-1073 KINFV----- -----GGNKL QSTGNKTEDL KGTECAKSTP VT-AVQIPEV ENSP00000265069/1-1074 KINFV----- -----GGNKL QSTGNKAEDI KGTECVKSTP VTSAVQIPEV bmy_17018T0/1-742 KINFVGNSLP FLQPTGGNKL QSTGNKTEDL KGTECVKSTP VT-AVQIPEV BACU015040/1-992 ---------- -----GGNKL QSTGNKTEDL KGTECVKSTP VT-AVQIPEV ENSBTAP00000011072/1-1030 KINFV----- -----GGNKL QSTGNKTEDL KGTECVKNTP VT-SVPIPEV 551 600 ENSTTRP00000016415/1-1073 KPDTVSEPVT PASLAALQSD VQPVGHDYVE EVRNDEGKVI RFHCKLCECS ENSP00000265069/1-1074 KQDTVSEPVT PASLAALQSD VQPVGHDYVE EVRNDEGKVI RFHCKLCECS bmy_17018T0/1-742 KPDTVSEPVT PASLAALQSD VQPVGHDYVE EVRNDEGKVI RFHCKLCECS BACU015040/1-992 KPDTVSEPVT PASLAALQSD VQPVGHDYVE EVRNDEGKVI RFHCKLCECS ENSBTAP00000011072/1-1030 KPDTVSEPVT PASLAALQSD VQPVGHDYVE EVRNDEGKVI RFHCKLCECS 601 650 ENSTTRP00000016415/1-1073 XXXXXXXXXX XXXXXXXXXX KKKVNPDLQV EVKPSIRARK IQEEKMRKQM ENSP00000265069/1-1074 FNDPNAKEMH LKGRRHRLQY KKKVNPDLQV EVKPSIRARK IQEEKMRKQM bmy_17018T0/1-742 FNDPNAKEMH LKGRRHRLQY KKKVNPDLQV EVKPSIRARK IQEEKMRKQM BACU015040/1-992 FNDPNAKEMH LKGRRHRLQY KKKVNPDLQV EVKPSIRARK IQEEKMRKQM ENSBTAP00000011072/1-1030 FNDPNAKEMH LKGRRHRLQY KKKVNPDLQV EVKPSIRARK IQEEKMRKQM 651 700 ENSTTRP00000016415/1-1073 QKEEYWRRRE EEERWRMEMR RYEEDMYWRR MEEEQHHWDD RRRMPDGGYP ENSP00000265069/1-1074 QKEEYWRRRE EEERWRMEMR RYEEDMYWRR MEEEQHHWDD RRRMPDGGYP bmy_17018T0/1-742 QKEEYWRRRE EEERWRMEMR RYEEDMYWRR MEEEQHHWDD RRRMPDGGYP BACU015040/1-992 QKEEYWRRRE EEERWRMEMR RYEEDMYWRR MEEEQHHWDD RRRMPDGGYP ENSBTAP00000011072/1-1030 QKEEYWRRRE EEERWRMEMR RYEEDMYWRR MEEEQHHWDD RRRMPDGGYP 701 750 ENSTTRP00000016415/1-1073 HGPPGPLGLL GVRPGMPPQP QGPA------ ------PLRR PDSSDDRYVM ENSP00000265069/1-1074 HGPPGPLGLL GVRPGMPPQP QGPA------ ------PLRR PDSSDDRYVM bmy_17018T0/1-742 HGPPGPLGLL GVRPGMPPQP QGPAVSVHFV YIGGESPLRR PDSSDDRYVM BACU015040/1-992 HGPPGPLGLL GVRPGMPPQP QGPA------ ------PLRR PDSSDDRYVM ENSBTAP00000011072/1-1030 HGPPGPLGLL GVRPGMPPQP QGPA------ ------PLRR PDSSDDRYVM 751 800 ENSTTRP00000016415/1-1073 TKHATIYPTE EELQAVQKIV SITERALKLV SDSLSEHEKS KSKEGDDKKE ENSP00000265069/1-1074 TKHATIYPTE EELQAVQKIV SITERALKLV SDSLSEHEKN KNKEGDDKKE bmy_17018T0/1-742 TKHATIYPTE EELQAVQKIV SITERALKLV SDSLSEHEKS KSKEGDDKKE BACU015040/1-992 TKHATIYPTE EELQAVQKIV SITERALKLV SDSLSEHEKS KSKEGDDKKE ENSBTAP00000011072/1-1030 TKHATIYPTE EELQAVQKIV SITERALKLV SDSLSEHEKS KSKEGDDKKE 801 850 ENSTTRP00000016415/1-1073 GGKDRALKGV LRVGVLAKGL LLRGDRNVNL VLLCSEKPSK TLLSRIAENL ENSP00000265069/1-1074 GGKDRALKGV LRVGVLAKGL LLRGDRNVNL VLLCSEKPSK TLLSRIAENL bmy_17018T0/1-742 GGKDRALKGV LRVGVLAKGL LLRGDRNVNL VLLCSEKPSK TLLSRIAENL BACU015040/1-992 GGKDRALKGV LRVGVLAKGL LLRGDRNVNL VLLCSEKPSK TLLSRIAENL ENSBTAP00000011072/1-1030 GGKDRALKGV LRVGVLAKGL LLRGDRNVNL VLLCSEKPSK TLLSRIAENL 851 900 ENSTTRP00000016415/1-1073 PKQLA----- --------VI SPEKYDIKCA ISEAAIILNS CVEPKMQVTI ENSP00000265069/1-1074 PKQLA----- --------VI SPEKYDIKCA VSEAAIILNS CVEPKMQVTI bmy_17018T0/1-742 PKQLAVSIME MFIFTPCLVI SPEKYDIKCA VSEAAIILNS CVEPKMQVTI BACU015040/1-992 PKQLA----- --------VI SPEKYDIKCA VSEAAIILNS CVEPKMQVTI ENSBTAP00000011072/1-1030 PKQLA----- --------VI SPEKYDIKCA VSEAAIILNS CVEPKMQVTI 901 950 ENSTTRP00000016415/1-1073 TLTSPIIREE NMREG----- ---------- ------DVTS GMVKDPPDVL ENSP00000265069/1-1074 TLTSPIIREE NMREG----- ---------- ------DVTS GMVKDPPDVL bmy_17018T0/1-742 TLTSPIIREE NMREGVSCSP GQTPIPHCIL PIQSILDVTS GMVKDPPDVL BACU015040/1-992 TLTSPIIREE NMREG----- ---------- ------DVTS GMVKDPPDVL ENSBTAP00000011072/1-1030 TLTSPIIREE NMREG----- ---------- ------DVTS GMVKDPPDVL 951 1000 ENSTTRP00000016415/1-1073 DRQKCLDALA ALRHAKWFQA RANGLQSCVI IIRILRDLCQ RVPTWSDFPS ENSP00000265069/1-1074 DRQKCLDALA ALRHAKWFQA RANGLQSCVI IIRILRDLCQ RVPTWSDFPS bmy_17018T0/1-742 DRQKCLDALA ALRHAKWFQA RANGLQSCVI IIRILRDLCQ RVPTWSDFPS BACU015040/1-992 DRQKCLDALA ALRHAKWFQA RANGLQSCVI IIRILRDLCQ RVPTWSDFPS ENSBTAP00000011072/1-1030 DRQKCLDALA ALRHAKWFQA RANGLQSCVI IIRILRDLCQ RVPTWSDFPS 1001 1050 ENSTTRP00000016415/1-1073 WAMELLVEKA ISSASSPQSP GDALRRVFEC ISSGIILKGS PGLLDPCEKD ENSP00000265069/1-1074 WAMELLVEKA ISSASSPQSP GDALRRVFEC ISSGIILKGS PGLLDPCEKD bmy_17018T0/1-742 WVSNM----- ---------- ---------- ---------- ---------- BACU015040/1-992 WAMELLVEKA ISSASSPQSP GDALRRVFEC ISSGIILKGS PGLLDPCEKD ENSBTAP00000011072/1-1030 WAMELLVEKA ISSASSPQSP GDALRRVFEC ISSGIILKGS PGLLDPCEKD 1051 1100 ENSTTRP00000016415/1-1073 PFDTLATMTD QQREDITSSA QFALRLLAFR QIHKVLGMDP LPQMSQRFNI ENSP00000265069/1-1074 PFDTLATMTD QQREDITSSA QFALRLLAFR QIHKVLGMDP LPQMSQRFNI bmy_17018T0/1-742 ---------- ---------- ---------- ---------- ---------- BACU015040/1-992 PFDTLATMTD QQREDITSSA QFALRLLAFR QIHKVLGMDP LPQMSQRFNI ENSBTAP00000011072/1-1030 PFDTLATMTD QQREDITSSA QFALRLLAFR QIHKVLGMDP LPQMNQRFNI 1101 1150 ENSTTRP00000016415/1-1073 HNNRKRRRDS DGVDGFEAEG KKDKKDYDNF ENSP00000265069/1-1074 HNNRKRRRDS DGVDGFEAEG KKDKKDYDNF bmy_17018T0/1-742 ---------- ---------- ---------- BACU015040/1-992 HNNRKRRRDS DGVDGFEAEG KKDKKDYDNF ENSBTAP00000011072/1-1030 HNNRKRRRDS DGVDGFEAEG KKDKKDYDNF