KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:42:54 2014 Check: 00 .. Name: ENSTTRP00000002791/1-936 Len: 942 Check: 5527 Weight: 1.00 Name: ENSP00000334910/1-941 Len: 942 Check: 9772 Weight: 1.00 Name: ENSBTAP00000011077/1-921 Len: 942 Check: 3347 Weight: 1.00 Name: bmy_03673T0/1-918 Len: 942 Check: 9091 Weight: 1.00 Name: BACU004965/1-921 Len: 942 Check: 3811 Weight: 1.00 // 1 50 ENSTTRP00000002791/1-936 MGQACGHSIL CRSQQYPAAR PAEPRGQQVF LKPDEPP-PP QPCADSLQDA ENSP00000334910/1-941 MGQACGHSIL CRSQQYPAAR PAEPRGQQVF LKPDEPPPPP QPCADSLQDA ENSBTAP00000011077/1-921 ---------- ------MRRQ PAASRD---- LFAQEPV-PP GSGDGALQDA bmy_03673T0/1-918 MASALAALVS LVMATFMGS- ---------- LILWVPILGQ GLSPQVLEDA BACU004965/1-921 ---------- ------MRRQ PAASRD---- LLAQEPV-PP GSRDGTLQDA 51 100 ENSTTRP00000002791/1-936 LLSLGSVIDI AGLQWAVKEA LSAVLPRVET VYTYLLDGES RLVCEEPPHE ENSP00000334910/1-941 LLSLGSVIDI SGLQRAVKEA LSAVLPRVET VYTYLLDGES QLVCEDPPHE ENSBTAP00000011077/1-921 LLSLGSVIDV AGLQQAVKEA LSAVLPKVET VYTYLLDGES RLVCEEPPHE bmy_03673T0/1-918 LLSLGSVIDI AGLQRAVREA LSAVLPRVET VYTYLLDGES RLVCEEPPHE BACU004965/1-921 LLSLGSIIDI AGLQRAVREA LSAVLPRVET VYTYLLDGES RLVCEEPPHE 101 150 ENSTTRP00000002791/1-936 LPQEGKVRXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXLVIPL ENSP00000334910/1-941 LPQEGKVREA IISQKRLGCN GLGFSDLPGK PLARLVAPLA PDTQVLVMPL ENSBTAP00000011077/1-921 LPQEGKVREA VISRKRLGCN GLGPSDLPGK PLARLVAPLA PDTQVLVIPL bmy_03673T0/1-918 LPQEGKVREA VISRKRLGCN GLGPSDMPGK PLARLVAPLA PDTQVLVIPL BACU004965/1-921 LPQEGKVREA VISRKRLGCN GLGPSDMPGK PLARLVAPLA PDTQVLVIPL 151 200 ENSTTRP00000002791/1-936 VDKEAGAVAA VILVHCGHLS DSEEWSLQAV EKHTL--LKR --QLQQR-PS ENSP00000334910/1-941 ADKEAGAVAA VILVHCGQLS DNEEWSLQAV EKHTLVALRR VQVLQQRGPR ENSBTAP00000011077/1-921 VDKEAGAVAA VILVHCGQLS DNEEWSLQAV EKHTLVALKR VQALQQRESS bmy_03673T0/1-918 VDKEAGAVAA VILVHCGQLS DSEEWSLQAV EKHTLVALKR VQALQQRGPS BACU004965/1-921 VDKEAGAVAA VILVHCGQLS DSEEWSLQAV EKHTLVALKR VQALQQRGPS 201 250 ENSTTRP00000002791/1-936 AAPEAVQNTP EGAAGDQKGG VPYTDQDRKI VQLCGELYDL DASSLQLKVL ENSP00000334910/1-941 EAPRAVQNPP EGTAEDQKGG AAYTDRDRKI LQLCGELYDL DASSLQLKVL ENSBTAP00000011077/1-921 VAPEATQNPP EEAAGDQKGG VAYTDQDRKI LQLCGELYDL DASSLQLKVL bmy_03673T0/1-918 AAPEAVQNTP EGAAGDQKGG VPYTDQDRKI LQLCGELYDL DASSLQLKLL BACU004965/1-921 AAPEAVQNTP EGAAGDQKGG VPYTDQDRKI LQLCGELYDL DASSLQLKVL 251 300 ENSTTRP00000002791/1-936 QYLQQETQAS RCCLLLVSED SLQLSCKVIG DKVLEEEISF PLTMGRLGQV ENSP00000334910/1-941 QYLQQETRAS RCCLLLVSED NLQLSCKVIG DKVLGEEVSF PLT-GCLGQV ENSBTAP00000011077/1-921 QYLQQETQAS RCCLLLVSED NLQLSCKVIG DKVLEEEISF PLTTGRLGQV bmy_03673T0/1-918 QYLQQETQAS RCCLLLVSED NLQLSCKVIG DKVLEEEISF PLTMGRLGQV BACU004965/1-921 QYLQQEIQAS RCCLLLVSED NLQLSCKVIG DKVLEEEISF PLTMGRLGQV 301 350 ENSTTRP00000002791/1-936 VEDKKSIQLK DLTSEDVQQL QSMLGFEVQA MLCIPVISRA TDQVVALACT ENSP00000334910/1-941 VEDKKSIQLK DLTSEDVQQL QSMLGCELQA MLCVPVISRA TDQVVALACA ENSBTAP00000011077/1-921 VEDKKSIQLK DLTSEDMQQL QSMLGCEVQA MLCVPVISRA TDQVVALACA bmy_03673T0/1-918 VEDKKSIQLK DLTSEDVQQL QSMLGFEVQA MLCVPVISRA TDQVVALACA BACU004965/1-921 VEDKKSIQLK DLTSEDVQQL QSMLGFEVQA MLCVPVISRA TDQVVALACT 351 400 ENSTTRP00000002791/1-936 FNKLGGDLFT DQDERVIQHC FHYTSTVLTS TLAFQKEQKL KCECQALLQV ENSP00000334910/1-941 FNKLEGDLFT DEDEHVIQHC FHYTSTVLTS TLAFQKEQKL KCECQALLQV ENSBTAP00000011077/1-921 FNKLGGDLFT DQDEHVIQHC FHYTSTVLTS TLAFQKEQKL KCECQALLQV bmy_03673T0/1-918 FNKLGGDLFT DQDERVIQHC FHYTSTVLTS TLAFQKEQKL KCECQALLQV BACU004965/1-921 FNKLGGDLFT DQDERVIQHC FHYTSTVLTS TLAFQKEQKL KCECQALLQV 401 450 ENSTTRP00000002791/1-936 AKNLFTHLDD VSVLLQEIIT EARNLSNAEI CSVFLLDQNE LVAKVFDGGV ENSP00000334910/1-941 AKNLFTHLDD VSVLLQEIIT EARNLSNAEI CSVFLLDQNE LVAKVFDGGV ENSBTAP00000011077/1-921 AKNLFTHLDD VSVLLQEIIT EARNLSNAEI CSVFLLDQNE LVAKVFDGGV bmy_03673T0/1-918 AKNLFTHLDD VSVLLQEIIT EARNLSNAEI CSVFLLDQNE LVAKVFDGGV BACU004965/1-921 AKNLFTHLDD VSVLLQEIIT EARNLSNAEI CSVFLLDQNE LVAKVFDGGV 451 500 ENSTTRP00000002791/1-936 VDDESYEIRI PADQGIAGHV ATTGQILNIP DAYAHPLFYR GVDDSTGFRT ENSP00000334910/1-941 VDDESYEIRI PADQGIAGHV ATTGQILNIP DAYAHPLFYR GVDDSTGFRT ENSBTAP00000011077/1-921 VEDESYEIRI PADQGIAGHV ATTGQILNIP DAYAHPLFYR GVDDSTGFRT bmy_03673T0/1-918 VDDESYEIRI PADQGIAGHV ATTGQILNIP DAYAHPLFYR GVDDSTGFRT BACU004965/1-921 VDDESYEIRI PADQGIAGHV ATTGQILNIP DAYAHPLFYR GVDDSTGFRT 501 550 ENSTTRP00000002791/1-936 RNILCFPIKN ENKEVIGVAE LVNKINGPWF SKFDEDLATA FSIYCGISIA ENSP00000334910/1-941 RNILCFPIKN ENQEVIGVAE LVNKINGPWF SKFDEDLATA FSIYCGISIA ENSBTAP00000011077/1-921 RNILCFPIKN ENQEVIGVAE LVNKINGPWF SKFDEDLATA FSIYCGISIA bmy_03673T0/1-918 RNILCFPIKN ENQEVIGVAE LVNKINGPWF SKFDEDLATA FSIYCGISIA BACU004965/1-921 RNILCFPIKN ENQEVIGVAE LVNKINGPWF SKFDEDLATA FSIYCGISIA 551 600 ENSTTRP00000002791/1-936 HSLLYKKVNE AQYRSHLANE MMMYHMKVSD DEYTKLLHDG IQPVAAIDSN ENSP00000334910/1-941 HSLLYKKVNE AQYRSHLANE MMMYHMKVSD DEYTKLLHDG IQPVAAIDSN ENSBTAP00000011077/1-921 HSLLYKKVNE AQYRSHLANE MMMYHMKVSD DEYTKLLHDG IQPVAAIDSN bmy_03673T0/1-918 HSLLYKKVNE AQYRSHLANE MMMYHMKVSD DEYTKLLHDG IQPVAAIDSS BACU004965/1-921 HSLLYKKVNE AQYRSHLANE MMMYHMKVSD DEYTKLLHDG IQPVAAIDSS 601 650 ENSTTRP00000002791/1-936 FACFTYTPRS LPEDDTSMAI LSMLQDMNFI NNYKIDCPTL ARFCLMVKKG ENSP00000334910/1-941 FASFTYTPRS LPEDDTSMAI LSMLQDMNFI NNYKIDCPTL ARFCLMVKKG ENSBTAP00000011077/1-921 FASFTYTPRS LPEDDTSMAI LSMLQDMNFI NNYKIDCPTL ARFCLMVKKG bmy_03673T0/1-918 FACFTYTPRS LPEDDTSMAI LSMLQDMNFI NNYKIDCPTL ARFCLMVKKG BACU004965/1-921 FACFTYTPRS LPEDDTSMAI LSMLQDMNFI NNYKIDCPTL ARFCLMVKKG 651 700 ENSTTRP00000002791/1-936 YRDPPYHNWM HAFSVSHFCY LLYKNLELAN YLEDMEIFAL FISCMCHDLD ENSP00000334910/1-941 YRDPPYHNWM HAFSVSHFCY LLYKNLELTN YLEDIEIFAL FISCMCHDLD ENSBTAP00000011077/1-921 YRDPPYHNWM HAFSVSHFCY LLYKNLELTN YLEDMEIFAL FISCMCHDLD bmy_03673T0/1-918 YRDPPYHNWM HAFSVSHFCY LLYKNLELAN YLEDMEIFAL FISCMCHDLD BACU004965/1-921 YRDPPYHNWM HAFSVSHFCY LLYKNLELAN YLEDMEIFAL FISCMCHDLD 701 750 ENSTTRP00000002791/1-936 HRGTNNSFQV ASKSVLAALY SSEGSVMERH HFAQAIAILN THGCNIFDHF ENSP00000334910/1-941 HRGTNNSFQV ASKSVLAALY SSEGSVMERH HFAQAIAILN THGCNIFDHF ENSBTAP00000011077/1-921 HRGTNNSFQV ASKSVLAALY SSEGSVMERH HFAQAIAILN THGCNIFDHF bmy_03673T0/1-918 HRGTNNSFQV ASKSVLAALY SSEGSVMERH HFAQAIAILN THGCNIFDHF BACU004965/1-921 HRGTNNSFQV ASKSVLAALY SSEGSVMERH HFAQAIAILN THGCNIFDHF 751 800 ENSTTRP00000002791/1-936 SRKDYQRMLD LMRDIILATD LAHHLRIFKD LQKMAEVGYD RTNKQHHSLL ENSP00000334910/1-941 SRKDYQRMLD LMRDIILATD LAHHLRIFKD LQKMAEVGYD RNNKQHHRLL ENSBTAP00000011077/1-921 SRKDYQRMLD LMRDIILATD LAHHLRIFKD LQKMAEVGYD RTNKQHHSLL bmy_03673T0/1-918 SRKDYQRMLD LMRDIILATD LAHHLRIFKD LQKMAEVGYD RTNKQHHSLL BACU004965/1-921 SRKDYQRMLD LMRDIILATD LAHHLRIFKD LQKMAEVGYD RTNKQHHSLL 801 850 ENSTTRP00000002791/1-936 LCLLMTSCDL SDQTKGWKTT RKIAELIYKE FFSQGDLEKA MGNRPMEMMD ENSP00000334910/1-941 LCLLMTSCDL SDQTKGWKTT RKIAELIYKE FFSQGDLEKA MGNRPMEMMD ENSBTAP00000011077/1-921 LCLLMTSCDL SDQTKGWKTT RKIAELIYKE FFSQGDLEKA MGNRPMEMMD bmy_03673T0/1-918 LCLLMTSCDL SDQTKGWKTT RKIA------ -------EKA MGNRPMEMMD BACU004965/1-921 LCLLMTSCDL SDQTKGWKTT RKIAELIYKE FFSQGDLEKA MGNRPMEMMD 851 900 ENSTTRP00000002791/1-936 REKAYIPELQ ISFMEHIAMP IYKLLQDLFL KAAELYERVA SNREHWTKVS ENSP00000334910/1-941 REKAYIPELQ ISFMEHIAMP IYKLLQDLFP KAAELYERVA SNREHWTKVS ENSBTAP00000011077/1-921 REKAYIPELQ ISFMEHIAMP IYKLLQDLFP KAAELYERVA SNREHWTKVS bmy_03673T0/1-918 REKAYIPELQ ISFMEHIAMP IYKLLQDLFP KAAELYERVA SNREHWTKVS BACU004965/1-921 REKAYIPELQ ISFMEHIAMP IYKLLQDLFP KAAELYERVA SNREHWTKVS 901 950 ENSTTRP00000002791/1-936 HKFTIRGLPS NNSLDFLDEE YEVPDLDGAG APINGCCSLD AE ENSP00000334910/1-941 HKFTIRGLPS NNSLDFLDEE YEVPDLDGTR APINGCCSLD AE ENSBTAP00000011077/1-921 HKFTIRGLPS NNSLDFLDEE YEVPDLDGAR APINGCCSLD AE bmy_03673T0/1-918 HKFTIRGLPS NNSLDFLDEE YEVPDLDGAG APINGCCSLD AE BACU004965/1-921 HKFTIRGLPS NNSLDFLDEE YEVPDLDGAG APINGCCSLD AE