KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:42:58 2014 Check: 00 .. Name: bmy_21286T0/1-456 Len: 456 Check: 7386 Weight: 1.00 Name: ENSP00000406674/1-335 Len: 456 Check: 9450 Weight: 1.00 Name: ENSTTRP00000008794/1-334 Len: 456 Check: 7050 Weight: 1.00 Name: ENSBTAP00000011091/1-335 Len: 456 Check: 7358 Weight: 1.00 // 1 50 bmy_21286T0/1-456 MESLYRVPFL VLECPNLKLK KPPWVHMPSA MTMYALVVVS YFLIAGGIVY ENSP00000406674/1-335 ----MKVEFA PLNIQLAR-- --------RL QTVAVLQWVL KYLLLGPMSI ENSTTRP00000008794/1-334 ----MKVEFA PLNIPLAR-- --------RL QTAAVLQWVF PFL-TAQVCL ENSBTAP00000011091/1-335 ----MKVEFA PLNIPLAR-- --------RL QTAAVLHWLL SFLLFAQVCL 51 100 bmy_21286T0/1-456 DVTVEPPGVG SMTEEHGHQR PVAFLAYRVN GQYIMEGLPS SFLFTMGGLG ENSP00000406674/1-335 GITV------ ---------- ------MLII HNYLFLYIP- -YLM------ ENSTTRP00000008794/1-334 GVIV------ ---------- ------FLII YNYWFLYIP- -YLT------ ENSBTAP00000011091/1-335 GIIV------ ---------- ------FLII YNYWFLYLP- -YLT------ 101 150 bmy_21286T0/1-456 FIILDRSNAP NIPKLNRFLL LFIGFVCVLL SFFMARVFMR MKLPGYLMGV ENSP00000406674/1-335 WLYFDWHTPE RGGRRSSWIK NW-----TLW KHF--KDYFP I--------- ENSTTRP00000008794/1-334 WLYFDWQTPE QGGRRSDWVR SW-----TIW RYF--KDYFP I--------- ENSBTAP00000011091/1-335 WLYFDWQTPE QGGRRSEWVR NW-----AIW RYF--KDYFP I--------- 151 200 bmy_21286T0/1-456 HCQRTDLGRG KQLIKTWDLN PSHNYIFGFH PHGVLVAGAF GNFCTNYSNF ENSP00000406674/1-335 ---------- -HLIKTQDLD PSHNYIFGFH PHGIMAVGAF GNFSVNYSDF ENSTTRP00000008794/1-334 ---------- -HLIKTWDLN PSHNYIFGFH PHGVLVAGAF GNFCTNYSNF ENSBTAP00000011091/1-335 ---------- -HLIKTWDLD PSHNYIFGFH PHGVLVVGAF GNFCTNYSAF 201 250 bmy_21286T0/1-456 KELFPGLTAY LHVLPFWFRC PLFREYLMSS GPVSVSRRSV SHVLSKEGGG ENSP00000406674/1-335 KDLFPGFTSY LHVLPLWFWC PVFREYVMSV GLVSVSKKSV SYMVSKEGGG ENSTTRP00000008794/1-334 KELFPGLTAY LHVLPFWFRC PLFREYLMSS GPVSVSRRSV SHVLSKEGGG ENSBTAP00000011091/1-335 KELFPGFTSY LHVLPYWFRC PLFREYLMSS GPVSVSKKSV CHVLSKEGGG 251 300 bmy_21286T0/1-456 NISVIVLGGA EESLDAHPGK FTLFIRQRKG FVKIALTHGA YLVPVFSFGE ENSP00000406674/1-335 NISVIVLGGA KESLDAHPGK FTLFIRQRKG FVKIALTHGA SLVPVVSFGE ENSTTRP00000008794/1-334 NISVIVLGGA EESLDAHPGK FTLFIRQRKG FVKIALTHGA YLVPVFSFGE ENSBTAP00000011091/1-335 NISVIVLGGA EESLDAHPGK FTLFIRQRKG FVKIALTHGA YLVPVFSFGE 301 350 bmy_21286T0/1-456 NELFKQVSNP EGSWLRTVQE KLQKIMGFAL PLFHARGIFQ YNFGLMPYRK ENSP00000406674/1-335 NELFKQTDNP EGSWIRTVQN KLQKIMGFAL PLFHARGVFQ YNFGLMTYRK ENSTTRP00000008794/1-334 NELFKQVSNP EGSWLRAVQE KLQKIMGFAL PLFHARGVFQ YNFGLMPYRK ENSBTAP00000011091/1-335 NELFKQVSNP EGSWLRNVQE KLQKIMGFAL PLFHARGIFQ YNFGLIPYRK 351 400 bmy_21286T0/1-456 PIHTVVGRPI PVHQTLHPTP EQVEELHQTY MEELRKLFEE HKGKYGIKFA ENSP00000406674/1-335 AIHTVVGRPI PVRQTLNPTQ EQIEELHQTY MEELRKLFEE HKGKYGI--- ENSTTRP00000008794/1-334 PIHTVVGRPI PVRQTLHPTP EQIEELHQTY MDELRKLFEE HKGKYGI--- ENSBTAP00000011091/1-335 PIHTVVGRPI PVRQTLNPTS EQIEELHQTY MEELRKLFEE HKGKYGI--- 401 450 bmy_21286T0/1-456 TEKYYYTALL TFPFCKSYFG DVSWAKPKFP TAGLATGAVG IGAAGWGKLP ENSP00000406674/1-335 ---------- ---------- ------PEHE TLVLK----- ---------- ENSTTRP00000008794/1-334 ---------- ---------- ------PENE TLIFR----- ---------- ENSBTAP00000011091/1-335 ---------- ---------- ------PENE TLIFR----- ---------- 451 500 bmy_21286T0/1-456 QAQDGS ENSP00000406674/1-335 ------ ENSTTRP00000008794/1-334 ------ ENSBTAP00000011091/1-335 ------