KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:01 2014 Check: 00 .. Name: ENSTTRP00000011499/1-515 Len: 571 Check: 5156 Weight: 1.00 Name: ENSP00000396225/1-515 Len: 571 Check: 8694 Weight: 1.00 Name: BACU015979/1-419 Len: 571 Check: 7049 Weight: 1.00 Name: ENSBTAP00000011098/1-520 Len: 571 Check: 7270 Weight: 1.00 Name: bmy_12403T0/1-495 Len: 571 Check: 2455 Weight: 1.00 // 1 50 ENSTTRP00000011499/1-515 ---------- ---------- ---------- --MWRLPGLL GRALPRLLGP ENSP00000396225/1-515 ---------- ---------- ---------- --MWRLPGLL GRALPRTLGP BACU015979/1-419 ---------- ---------- ---------- --MWRLPGLL GRG------- ENSBTAP00000011098/1-520 ---------- ---------- ---------- --MWRLPGLL GRALPRLLGP bmy_12403T0/1-495 RPLRGRHTGH SSRRPGVWPR SFGCELYGVG DDMWRLPGLL GRALPRLLGP 51 100 ENSTTRP00000011499/1-515 GLRGVTSKST SPDGPQATSS NLLVPVPSFD RSGHH--GPG TSKGPRSHGW ENSP00000396225/1-515 SLWRVTPKST SPDGPQTTSS TLLVPVPNLD RSGPH--GPG TSGGPRSHGW BACU015979/1-419 ---------- ---------Q NWIASVTS-S RSGHH--GPG TSRGPRSHGW ENSBTAP00000011098/1-520 GLRGVTPKSS SPDGPQATSS NLLVPVPSFD RSSPHCPGPG TSRGPKSHGW bmy_12403T0/1-495 GLRGVTSKST SPDGPQATSS NLLVPVPSFN RSGHH--GPG TSRGPRSHGW 101 150 ENSTTRP00000011499/1-515 KAAFQWMSAR DSRNTLWDAI SWGTLAVLAL QLARQIHFQA SLPAGPRRAE ENSP00000396225/1-515 KDAFQWMSSR VSPNTLWDAI SWGTLAVLAL QLARQIHFQA SLPAGPQRVE BACU015979/1-419 KDAFQWMSAR DSRNTLWDAI SWGTLAVLAL QLARQIHFQA SLPAGPWRAE ENSBTAP00000011098/1-520 KDAFQWMSAR GSRNTLWDAI SWGTLAVLAL QLARQIHFQT SLPAGPWRVE bmy_12403T0/1-495 KDAFQWMSAR DSRNTLWDAI SWGTLAVLAL QLARQIHFQA SLPVGPWRAE 151 200 ENSTTRP00000011499/1-515 RCFWHSPLDR FFSSPLRHPR SSLRRHILPS PDSPAPRHTG LRELRLGQEE ENSP00000396225/1-515 HCSWHSPLDR FFSSPLWHPC SSLRQHILPS PDGPAPRHTG LREPRLGQEE BACU015979/1-419 RCFWRSPLDR FLSSPLRHPR SY-------- ---------- ---------- ENSBTAP00000011098/1-520 HCSWCSPLDR FLSSPLRHPC SSLRRHILPS PDSPAPRHTD LGECRLGQDE bmy_12403T0/1-495 RCFWRSPLDR FLSSPLRHPR SY-------- ---------- ---------- 201 250 ENSTTRP00000011499/1-515 PSTRPESLSS PSSLRTTGLQ GASEEDPSDA GFLHASSSFK SKAKPAQPQP ENSP00000396225/1-515 ASAQPRNF-S HNSLRGARPQ DPSEEGPGDF GFLHASSSIE SEAKPAQPQP BACU015979/1-419 ---------- ---------- ------PSDT GFLHASSSFK SKTKPAQPQP ENSBTAP00000011098/1-520 SSTQPKSVAS PSSLRAARHQ DPSEEDPSDI SFLHASSSFK SKAKPAQPQP bmy_12403T0/1-495 ---------- ---------- ------PSDA GFLHASSSFK SKTKPAQPQP 251 300 ENSTTRP00000011499/1-515 TGEK-EQDKS KSLSLEEAMT SIQQLFQLSV SIAFNFL--- ---------- ENSP00000396225/1-515 TGEK-EQDKS KTLSLEEAVT SIQQLFQLSV SIAFNFL--- ---------- BACU015979/1-419 AGEKQEQDKS KSLSLEEAMT SIQQLFQLSV SIAFNFLGNW VDPVSRRADG ENSBTAP00000011098/1-520 TDEKQEQEKS KSLSLEEAMT SIQQLFQLSV SIAFNFL--- ---------- bmy_12403T0/1-495 AGEKQEQDKS KSLSLEEAMT SIQQLFQLSV SIAFNFL--- ---------- 301 350 ENSTTRP00000011499/1-515 -------TEX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000396225/1-515 ------GTEN MKSGDHTAAF SYFQKAAARG YSKAQYNAGL CHEHGRGTPR BACU015979/1-419 KMERVCGTEN MRDGDYTAAL SCFQKAADRG YSKAQYNVGL CHEHGRGTPR ENSBTAP00000011098/1-520 ------GTEN MKNGDYMAAF SYFQKAADRG YSKAQYNVGL CHEHGRGTPR bmy_12403T0/1-495 ------GTEN MRDGDYMAAF SCFQKAADRG YSKAQYNVGL CHEHGRGTPR 351 400 ENSTTRP00000011499/1-515 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000396225/1-515 DISKAVLYYQ LAASQGHSLA QYRYARCLLR DPASSWNPER QRAVSLLKQA BACU015979/1-419 DLGKAASYYQ LAASQGHNLA QYRYARCLLQ DPASSWDPEQ QRAVSMLKQA ENSBTAP00000011098/1-520 DPSKAAFYYQ LAASQGHNLA QYRYARCLLQ DPGSSWDPER QRAVSMLKRA bmy_12403T0/1-495 DLGKAASYYQ LAASQGHNLA QYRYARCLLQ DPASSWDPEQ QRAVSMLKQA 401 450 ENSTTRP00000011499/1-515 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDS QSRYHLGICY ENSP00000396225/1-515 ADSGLREAQA FLGVLFTKEP YLDEQRAVKY LWLAANNGDS QSRYHLGICY BACU015979/1-419 ADSGLREAQA FLGVLFTKEA YLDEQRAVKY LWLAANNGDS QSRYHLGICY ENSBTAP00000011098/1-520 ADSGLREAQA FLGVLFTKEP YVDERRAVKY LWLAANNGDS QSRYHLGICY bmy_12403T0/1-495 ADSGLREAQA FLGVLFTKEA YLDEQRAVKY LWLAANNGDS QSRYHLGICY 451 500 ENSTTRP00000011499/1-515 EKGLGVQRNL GEAVRCYQQS AALGNAPAQE RLRTLFSMEA AAPGPSELAV ENSP00000396225/1-515 EKGLGVQRNL GEALRCYQQS AALGNEAAQE RLRALFSMGA AAPGPSDLTV BACU015979/1-419 EKGLGVQRNL GEAVRCYQQS AALGNAPAQE RLRTLFSMEA AGTDES---- ENSBTAP00000011098/1-520 EKGLGVQKSL GEAMRCYQQS AALGNTPAQE RLRALFSTEA AAPGPSDLAV bmy_12403T0/1-495 EKGLGVQRNL GEAVRCYQQS AALGNAPAQE RLRTLFSMEA AAPGPGDLAV 501 550 ENSTTRP00000011499/1-515 RGLKSFSSPS LCSLN-TLLA GASRLPHASS TGNLGLLYRS ARLRASPGSP ENSP00000396225/1-515 TGLKSFSSPS LCSLN-TLLA GTSRLPHASS TGNLGLLCRS GHLGASLEAS BACU015979/1-419 ---QSQQVPP RAQYP----- ----VTEKRV AVAFGLFVTS APLVGTSTAF ENSBTAP00000011098/1-520 RGLKSFSSPS LCSLNRNLLA GASCLPHASS TGNLGLLCRS GHLRTSPGAP bmy_12403T0/1-495 RGVKSFSSPS LCSLN-TLLA GASRLPHASS TGNLGLLYRS ARLRASPGAP 551 600 ENSTTRP00000011499/1-515 SRAVLPHPYP LERSLVRLGF G ENSP00000396225/1-515 SRAIPPHPYP LERSVVRLGF G BACU015979/1-419 ---------- ---------- - ENSBTAP00000011098/1-520 SRAIPQHPYP LERSLVRLGF G bmy_12403T0/1-495 SRAVLPHPYP LERSLIRLGF G