KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:02 2014 Check: 00 .. Name: ENSP00000231484/1-1184 Len: 1200 Check: 7780 Weight: 1.00 Name: ENSBTAP00000011099/1-1197 Len: 1200 Check: 5495 Weight: 1.00 Name: ENSTTRP00000011509/1-1183 Len: 1200 Check: 4577 Weight: 1.00 Name: bmy_12405T0/1-1199 Len: 1200 Check: 3017 Weight: 1.00 Name: BACU015980/1-1199 Len: 1200 Check: 2434 Weight: 1.00 // 1 50 ENSP00000231484/1-1184 MMQLLQLLLG LLGPGGYLFL LGDCQEVTTL TVKYQVSEEV PSGTVIGKLS ENSBTAP00000011099/1-1197 MMRFLSL-LG LLGPGGYLFL SGDCQEVATL TVRYQVAEEV PSGTVIGKLP ENSTTRP00000011509/1-1183 MMRLLPLLLG LWGPGGYLFL SGDCQEVATL TVKYQVSEEV PSGTVIGKLS bmy_12405T0/1-1199 MMRLLPLLLG LLGPGGYLFL SGDCQEVATL TVKYQVSEEV PSGTVIGKLS BACU015980/1-1199 MMRLLPLLLG LLGPGGYLFL SGDCQEVTTL TVKYQVSEEV PSGTVIGKLS 51 100 ENSP00000231484/1-1184 QELGREERRR QAGAAFQVLQ LPQALPIQVD SEEGLLSTGR RLDREQLCRQ ENSBTAP00000011099/1-1197 QERGREEEPG QAGAAFQVLQ LPQGLPIQVD SEDGVLSTGR RLDREQLCRQ ENSTTRP00000011509/1-1183 QELGREERSG RAGAAFQVLQ LPQALPIQVD SKDGLLSTGR RLDREQLCRQ bmy_12405T0/1-1199 QELGREERSG RAGAAFQVLQ LPQALPIQVD SKDGLLSTGR RLDREQLCRQ BACU015980/1-1199 QELGREERSG RAGAAFQVLQ LPQALPIQVD SRDGLLSTGR RLDREQLCRQ 101 150 ENSP00000231484/1-1184 WDPCLVSFDV LATGDLALIH VEIQVLDIND HQPRFPKGEQ ELEISESASL ENSBTAP00000011099/1-1197 QDPCLVSFDV LATGERALIH VEIQVLDIND HQPQFPKGEQ ELEISESASL ENSTTRP00000011509/1-1183 QDPCLVSFDV LATGDLALIH VEIQVLDIND HQPQFPKGEQ ELEISESASL bmy_12405T0/1-1199 QDPCLVSFDV LATGDLALIH VEIQVLDIND HQPRFPKGEQ ELEISESASL BACU015980/1-1199 QDPCLVSFDV LATGDLALIH VEIQVLDIND HQPRFPKGEQ ELEISESASL 151 200 ENSP00000231484/1-1184 RTRIPLDRAL DPDTGPNTLH TYTLSPSEHF ALDVIVGPDE TKHAELIVVK ENSBTAP00000011099/1-1197 RTRIPLDRAL DPDTGPNTLH SYTLSPSEHF ALDVIVGPDQ TKHAELVVVK ENSTTRP00000011509/1-1183 RTRIPLDRAL DPDTGPNTLH SYTLSPSEHF ALDVIVGPDE TKHAELVVVK bmy_12405T0/1-1199 RTRIPLDRAL DPDTGPNTLH SYTLSPSEHF ALDVIVGPDE TKHAELVVVK BACU015980/1-1199 RTRIPLDRAL DPDTGPNTLH SYTLSPSEHF ALDVIVGPDE TKHAELVVVK 201 250 ENSP00000231484/1-1184 ELDREIHSFF DLVLTAYDNG NPPKSGTSLV KVNVLDSNDN SPAFAESSLA ENSBTAP00000011099/1-1197 ELDREIHSYF DLVLTAYDSG NPPKSGTSLV KVSVLDSNDN SPVFAESSLA ENSTTRP00000011509/1-1183 ELDREIHSFF DLVLTAYDSG NPPKSGTSLV KVNVLDSNDN SPVFAESSLA bmy_12405T0/1-1199 ELDREIHSFF DLVLTAYDSG SPPKSGTSLV KVNVLDSNDN SPVFAESSLA BACU015980/1-1199 ELDREIHSFF DLVLTAYDSG NPPKSGTSLV KVNVLDSNDN SPVFAESSLA 251 300 ENSP00000231484/1-1184 LEIQEDAAPG TLLIKLTATD PDQGPNGEVE FFLSKHMPPE VLDTFSIDAK ENSBTAP00000011099/1-1197 LEIQEDAAPG TLLINLTATD PDQGPNGEVE YFLSKHVPLE VLNTFNIDAK ENSTTRP00000011509/1-1183 LEIQEDAASG TLLINLTATD PD-GPNGEVE YFLSKHVPPX XXXXXXXXXX bmy_12405T0/1-1199 LEIQEDASPG TLLINLTATD PDQGPNGEVE YFLSKHVPPE VLDTFSIDAK BACU015980/1-1199 LEIQEDASPG TLLINLTATD PDQGPNGEVE YFLSKHVPPE VLDTFSIDAK 301 350 ENSP00000231484/1-1184 TGQVILRRPL DYEKNPAYEV DVQARDLGPN PIPAHCKVLI KVLDVNDNIP ENSBTAP00000011099/1-1197 TGQVTLLQHL DYEKNPAYEV DVQARDLGPN PIPAHCKILI KVLDVNDNAP ENSTTRP00000011509/1-1183 XXXXXXXXXX XXXXXXXXEV DVQARDLGPN PIPAHCKILI KVLDVNDNTP bmy_12405T0/1-1199 TGQVILRQPL DYEKNPAYEV DVQARDLGPN PIPAHCKILI KVLDVNDNTP BACU015980/1-1199 TGQVILRQPL DYEKNPAYEV DVQARDLGPN PIPAHCKILI KVLDVNDNTP 351 400 ENSP00000231484/1-1184 SIHVTWASQP SLVSEALPKD SFIALVMADD LDSGHNGLVH CWLSQELGHF ENSBTAP00000011099/1-1197 SIHITWASQP LLVSEALPKD SFIALIMAND LDSGNNGLVH CWLSQELGHF ENSTTRP00000011509/1-1183 NIHITWASQP SLVSEALPKD SFIALIMAND LDSGNNGLVH CWLSQELGHF bmy_12405T0/1-1199 SIHITWASQP SLVSEALPKD SFIALIMAKD LDSGNNGLVH CWLSQELGHF BACU015980/1-1199 SIHITWASQP SLVSEALPKD SFIALIMAKD LDSGNNGLVH CWLSQELGHF 401 450 ENSP00000231484/1-1184 RLKRTNGNTY MLLTNATLDR EQWPKYTLTL LAQDQGLQPL SAKKQLSIQI ENSBTAP00000011099/1-1197 RLKRTNGNTY MLLTNATLDR EQWPQYTLTL LAQDQGPQPL SDKKQLSIQI ENSTTRP00000011509/1-1183 RLKRTNGNTY MLLTNATLDR EQWPQYTLTL LAQDQGPQPL SVKKQLSIQI bmy_12405T0/1-1199 RLKRTNGNTY MLLTNATLDR EQWPQYTLTL LAQDQGPQPL SVKKQLSIQI BACU015980/1-1199 RLKRTNGNTY MLLTNATLDR EQWPQYTLTL LAQDQGPQPL SVKKQLSIQI 451 500 ENSP00000231484/1-1184 SDINDNAPVF EKSRYEVSTR ENNLPSLHLI TIKAHDADLG INGKVSYRIQ ENSBTAP00000011099/1-1197 SDANDNAPVF EKSRYQVSTR ENNLPSLHLI TIKAHDADLG VNGKISYRIQ ENSTTRP00000011509/1-1183 GDANDNAPVF EKSRYQVSTR ENNLPSLHLI TIKAHDADLG VNGKISYHIQ bmy_12405T0/1-1199 SDANDNAPVF EKSRYQVSTR ENNLPSLHLI TIKAHDADLG VNGKISYHIQ BACU015980/1-1199 SDANDNAPVF EKSRYQVSTR ENNLPSLHLI TIKAHDADLG VNGKISYHIQ 501 550 ENSP00000231484/1-1184 DSPVAHLVAI DSNTGEVTAQ RSLNYEEMAG FEFQVIAEDS GQPMLASSVS ENSBTAP00000011099/1-1197 DSPVAHLVAI DSDTGEVTAQ RSLDYEQMAS FEFLVIAEDS GQPQLSSSVS ENSTTRP00000011509/1-1183 DSPVSHLVAI DSDTGQVTAQ RSLDYEQMAG FEFLVIAEDR GQPQLASSVS bmy_12405T0/1-1199 DSPVSHLVAI DSDTGEVTAQ RSLDYEQMAG FEFLVIAEDR GQPQLASSVS BACU015980/1-1199 DSPVSHLVAI DSDTGEVTAQ RSLDYEQMAG FEFLVIAEDR GQPQLASSVS 551 600 ENSP00000231484/1-1184 VWVSLLDAND NAPEVVQPVL SDGKASLSVL VNASTGHLLV PIETPNGLGP ENSBTAP00000011099/1-1197 VWVSLLDAND NAPEVIHPIL SNGRASLSVL VNASTGHLLV PIENPNGLGP ENSTTRP00000011509/1-1183 VWVSLLDAND NAPEVIHPVL SDGKASLSVL VNASTGHLLV PIETPNGVGP bmy_12405T0/1-1199 VWVSLLDAND NAPEVIHPIL SDGKASLSVL VNASTGHLLV PIETPNGVGP BACU015980/1-1199 VWVSLLDAND NAPEVIHPIL SDGKASLSVL VNASTGHLLV PIETPNGVGP 601 650 ENSP00000231484/1-1184 AGTDTPPLAT HSSRPFLLTT IVARDADSGA NGEPLYSIRS GNEAHLFILN ENSBTAP00000011099/1-1197 AGTDIPLQAT SSSRPFLLVT IIARDADSGA NGELLYTIRS GNEAGVFVLS ENSTTRP00000011509/1-1183 AGTDMPPQAT PSSRPFLLVT IVARDADSGA NGELLYSIQS GNEAGLFVLS bmy_12405T0/1-1199 AGTDVPPQAT PSSRPFLLVT IVARDADSGA NGELLYSIQS GNEAGLFVLS BACU015980/1-1199 AGTDMPPQAT PSSRPFLLVT IVARDADSGA NGELLYSIQS GNEAGLFVLS 651 700 ENSP00000231484/1-1184 PHTGQLFVNV TNASSLIGSE WELEIVVEDQ GSPPLQTRAL LRVMFVTSVD ENSBTAP00000011099/1-1197 PNLGQLFINV TNASSLTGSE WELEIVVEDR GSPSLQTRAL LQVLFVTSVD ENSTTRP00000011509/1-1183 PHLGQLFINI TNASSLTGSE WELEIVVEDR GSPSLQTRAL LRVFFVNSVD bmy_12405T0/1-1199 PHLGQLFINI TNASSLTGSE WELEIVVEDR GSPSLQTRAL LRVFFVTSVD BACU015980/1-1199 PHLGQLFINI TNASSLTGSE WELEIVVEDR GSPSLQTRAL LRVFFVTSVD 701 750 ENSP00000231484/1-1184 HLRDSARKPG ALSMSMLTVI CLAVLLGIFG LILALFMSIC RTEKKDNRAY ENSBTAP00000011099/1-1197 HLRDSAREPG ALSTSVLTVI CLVVLLAVFG SILALITSIC RTEKKDNRAY ENSTTRP00000011509/1-1183 HLRDSAREPG ALSTSVLTVI CLVVLLAISG LILALIMSIC RTEKKDNRAY bmy_12405T0/1-1199 HLRDSAREPG ALSTSVLTVI CLVVLLAISG LILALIMSIC RTEKKDNRAY BACU015980/1-1199 HLRDSAREPG ALSTSVLTVI CLVVLLAISG LILALIMSIC RTEKKDNRAY 751 800 ENSP00000231484/1-1184 NCREAESTYR QQPKRPQKHI QKADIHLVPV LRGQAGEPCE VGQSHKDVDK ENSBTAP00000011099/1-1197 NCREAESTYR HQPKRPQKQI QKADIQLVPM LRGQVDEPGE VGQPPKHVGE ENSTTRP00000011509/1-1183 NCREAESTYR HQPKRPQKHI QKADIHLVPV LRGQVDEPGE AGQPPKHVGK bmy_12405T0/1-1199 NCREAESTYR HQPKRPQKHI QKADIHLVPV LRGQVDEPGE AGQPPKHVGK BACU015980/1-1199 NCREAESTYR HQPKRPQKHI QKADIHLVPV LRGQVDEPGE AGQPPKHVGK 801 850 ENSP00000231484/1-1184 EAMMEAGWDP CLQAPFHLTP TLYRTLRNQG NQGAPAESRE VLQDTVNLLF ENSBTAP00000011099/1-1197 EAMMEAGWDS CLQAPFHLTP TLYRTLRNQG NQGTLAESRE VLQDTVNLLF ENSTTRP00000011509/1-1183 EAMMEAGWDP CLQAPFHLTP TLYRTLRNQG NQGTLAESRE VLQDTVNLLF bmy_12405T0/1-1199 EAMMEAGWDP CLQAPFHLTP TLYRTLRNQG NQGTLAESRE VLQDTVNLLF BACU015980/1-1199 EAMMEAGWDP CLQAPFHLTP TLYRTLRNQG NQGTLAESRE VLQDTVNLLF 851 900 ENSP00000231484/1-1184 NHPRQRNASR ENLNLPEPQP ATGQPRSRPL KVAGSPTGRL AGDQGSEEAP ENSBTAP00000011099/1-1197 NHPRQRNASR ENLHLAEPQP AVGQPRSRLL KAAGSPTGRV PGDQGSEEAP ENSTTRP00000011509/1-1183 NHPRQRNASR ENLNLPEPQP ATGQPRSRPL KVAGSPTGRV PGDQGSKEAP bmy_12405T0/1-1199 NHPRQRNASR ENLNLPEPQP ATGQPRSRPL KVAGSPTGRV PGDQGSKEAP BACU015980/1-1199 NHPRQRNASR ENLNLPEPQP ATGQPRSRPL KVAGSPTGRV PGDQGSKEAP 901 950 ENSP00000231484/1-1184 QRPPASSATL RRQRHLNGKV SPEKESGPRQ ILRSLVRLSV AAFAERNPVE ENSBTAP00000011099/1-1197 QSPPASSATL RRQRNLNGKV APEKESGPRQ ILRSLVRLSV AAFAERNPVE ENSTTRP00000011509/1-1183 LSPPASSATL RRQRNLHGKV APEKESGPRQ ILRSLVRLSV AAFAERNPVE bmy_12405T0/1-1199 LSPPASSATL RRQRNLHGKV APEKESGPRQ ILRSLVRLSV AAFAERNPVE BACU015980/1-1199 LSPPASSATL RRQRNLHGKV APEKESGPRQ ILRSLVRLSV AAFAERNPVE 951 1000 ENSP00000231484/1-1184 ELTVDSPPVQ QISQLLSLLH QGQFQPKPNH RGNKYLAKPG GSRSAIPDTD ENSBTAP00000011099/1-1197 ELTVDSPPVQ QISQLLSLLH QGQFQPKPNH RGNKYLAKPG SSRSTIPDTD ENSTTRP00000011509/1-1183 ELTVDSPPVQ QISQLLSLLH QGQFQPKPNH RGNKYLAKPG GSRSAIPDTD bmy_12405T0/1-1199 ELTVDSPPVQ QISQLLSLLH QGQFQPKPNH RGNKYLAKPG GSRSAIPDTD BACU015980/1-1199 ELTVDSPPVQ QISQLLSLLH QGQFQPKPNH RGNKYLAKPG GSRSAIPDTD 1001 1050 ENSP00000231484/1-1184 GPSARAGGQT DPEQEEGPLD PEEDLSVKQL LEEELSSLLD PSTGLALDRL ENSBTAP00000011099/1-1197 GPGARAGGQA EPDQEEGPLD PEEDLSVKQL LEEELSNLLD PHTGLALDRL ENSTTRP00000011509/1-1183 GPGARAGGQA EPDQEEGPLD PEEDLSVKQL LEEELSNLLD PYTGLALDRL bmy_12405T0/1-1199 GPGARAGGQA EPDQEEGPLD PEEDLSVKQL LEEELSNLLD PYTGLTLDRL BACU015980/1-1199 GPGARAGGQA EPDQEEGPLD PEEDLSVKQL LEEELSNLLD PYTGLALDRL 1051 1100 ENSP00000231484/1-1184 SAPDPAWMAR LSLPLTTNYR DNVISPDAAA TEEPRTFQTF GKAEAPELSP ENSBTAP00000011099/1-1197 SVPDPAWMAR LSLPLSTNYR DNVFSPDAAT SEEPRTFQTF GKA--PELSP ENSTTRP00000011509/1-1183 SVPDPAWMAR LSLPLATNYR DNVFSPDAAT SEEPRTFQTF GKAPGPELSP bmy_12405T0/1-1199 SVPDPAWMAR LSLPLATNYR DNVFSPDAAT SEEPRTFQTF GKAPGPELSP BACU015980/1-1199 SVPDPAWMAR LSLPLATNYR DNVFSPDAAT SEEPRTFQTF GKAPGPELSP 1101 1150 ENSP00000231484/1-1184 TGTRLASTFV SEMSSLLEML LEQRSSMPVE AASEALRRLS VCGRTLSLDL ENSBTAP00000011099/1-1197 TGTRLASTFL SEMSSLLEML LEQRPAVPVE AASEVLRRLS VCGRTLSLDL ENSTTRP00000011509/1-1183 TGTRLASTFL SEMSSLLEML LEQRPAVPVE AASEVLRRLS VCGRTLSLDL bmy_12405T0/1-1199 TGTRLASTFL SEMSSLLEML LEQRPAVPVE AASEVLRRLS VCGRTLSLDL BACU015980/1-1199 TGTRLASTFL SEMSSLLEML LEQRPAVPVE AASEVLRRLS VCGRTLSLDL 1151 1200 ENSP00000231484/1-1184 ATSAASGMKV QGDPGGKTGT EGKSRGSSSS SRCL------ ---------- ENSBTAP00000011099/1-1197 ATSGAAGSEG LTGLAGNKGA ESRTSSGSSS SRGQWIQEPG TLGDVRKPRP ENSTTRP00000011509/1-1183 ATSGASGSEG PGGRSGKKGA EGRTSSG-GS SRDLW----- ---------- bmy_12405T0/1-1199 ATSGASGSEG PGVRAGKQGA EGRTSSG-SS SRGLWIQEPG APGDVRKPRP BACU015980/1-1199 ATSGASGSEG PGGRAGKQGA EGRTSSG-SS SRGLWIQEPG APGDVRKPRP