KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:05 2014 Check: 00 .. Name: ENSP00000339883/1-615 Len: 630 Check: 8383 Weight: 1.00 Name: ENSBTAP00000011125/1-621 Len: 630 Check: 3889 Weight: 1.00 Name: ENSTTRP00000011060/1-621 Len: 630 Check: 8210 Weight: 1.00 Name: bmy_10530T0/1-450 Len: 630 Check: 1553 Weight: 1.00 Name: BACU001668/1-630 Len: 630 Check: 4097 Weight: 1.00 // 1 50 ENSP00000339883/1-615 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSTSQLYTVK YKDGTELELK ENSBTAP00000011125/1-621 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSNSQLYNVK YKDGTELELK ENSTTRP00000011060/1-621 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSNSQLYNVR YKDGTELELK bmy_10530T0/1-450 MPSRKFADGE VVRGRWPGSS LYYEVEVLSH DSNSQLYSVK YKDGTELELK BACU001668/1-630 MPSRKFADGE VVRGRWPGSS LYYEVEVLSH DSNSQLYSVK YKDGTELELK 51 100 ENSP00000339883/1-615 ENDIKPLTSF RQRKGGSTSS SPSRRRGSRS RSRSRSPGRP PKSARRSASA ENSBTAP00000011125/1-621 ESDIKPLTSF RQRKSGSTSS SPSRRRGSRS RSRSRSPGRL PKGSRRSASA ENSTTRP00000011060/1-621 ESDIKPLTSF RQRKSGSTSS SPSRRRGSRS RSRSRSPGRP PKGSRPSVSA bmy_10530T0/1-450 ESDIKPLTSF RQRKSGSTSS SPSRRRGSRS RSRSRSPGRP PKGSRPSVSA BACU001668/1-630 ESDIKPLTSF RQRKSGSTSS SPSRRRGSRS RSRSRSPGRP PKGSRPSVSS 101 150 ENSP00000339883/1-615 SHQADIKEAR RE-----VEV KLTPLILKPF GNSISRYNGE PEHIERNDAP ENSBTAP00000011125/1-621 SYQADLKEAR KEARKDMLEV KLTPLVLKPF GNSINRYNGE PELIERNDMP ENSTTRP00000011060/1-621 SHQAHIKEAK KEARKEILEV KLTPLVLKPF GNSINRYNGE PEHIERNDIP bmy_10530T0/1-450 SHQADIKEAK KEARKEMLEV KLTPLVLKPF GNSINRYNGE PEHIZRNDVP BACU001668/1-630 SHQADIKEAK KEARKEMLEI KLTPLVLKPF GNSISRYNGE PEHIERNDVP 151 200 ENSP00000339883/1-615 HKN------- --TQEKFSLS QESSYIATQY SLRPRREEVK LKEIDSKEEK ENSBTAP00000011125/1-621 HKH------- --TQEKFHLS QESSYIPTQY SLRARREEIK LKEVESKEEI ENSTTRP00000011060/1-621 HKN------- --TQEKFPLS QESSYILTQY SLHPRREEVK LKEIDSKEEK bmy_10530T0/1-450 HKN------- --XQEKFPLS QESCYIPTQY SLHPRREEVK LKEIDSKEEK BACU001668/1-630 HKNAQVQRGS FSSQEKFPLS QESCYIPTQY SLHPRREEVK LKEIDSKEEK 201 250 ENSP00000339883/1-615 YVAKELA-VR TFEVTPIRAK DLEFGGVPGV FLIMFGLPVF LFLLLLMCKQ ENSBTAP00000011125/1-621 VVTKRPALLR TSEVTATQSK DLEFGGVPGV FLIMLGLPAF LFLLLLMCKQ ENSTTRP00000011060/1-621 IVTKGPTSLR TFEVTPTQQK DLEFGGVPGV FLITLGLPAF LFLLLLMCKQ bmy_10530T0/1-450 IVTKGPTSLR TFE------- ---------- ---------- ---------- BACU001668/1-630 IVTKGPTSLR TFEVTATQQK DLEFGGVPGV FLITLGLPAF LFLLLLMCKQ 251 300 ENSP00000339883/1-615 KDPSLLNFPP PLPALYELWE TRVFGVYLLW FLIQVLFYLL PIGKVVEGTP ENSBTAP00000011125/1-621 KEPSLLNFPP PLPALGDLWE TRVFGAYLLW FLLQALFHLL PIGKVVEGTP ENSTTRP00000011060/1-621 EEPSLLNFPP PLPALYDLWE TRVFGAYLLW FFLQALFYLL PIGKVVEGTP bmy_10530T0/1-450 XEPSLLNFPP PLPALYDLWE TRIFGAYLLW FFLQALLYLL PIGKVVEGTP BACU001668/1-630 EEPSLLNFPP PLPALYDLWE TRIFGAYLLW FFLQVLLYLL PIGKVVEGTP 301 350 ENSP00000339883/1-615 LIDGRRLKYR LNGFYAFILT SAVIGTSLFQ GVEFHYVYSH FLQFALAATV ENSBTAP00000011125/1-621 LTDGRRLKYR LNGFYAFILT SALVGACFFW NVELYYVYRH FLQFALAAIL ENSTTRP00000011060/1-621 LTDGRRLKYR LNGFYAFILT SVLVGASLFW DVELYYVYSH FLQCALAATV bmy_10530T0/1-450 LTDGRR---- ---------- ---------- ---------- ---------- BACU001668/1-630 LTDGRRLKYR LNGFYAFILT SALVGASFFW DVELCYVYSH FLQCAFAATV 351 400 ENSP00000339883/1-615 FCVVLSVYLY MRSLKAPRND LSPASSGNAV YDFFIGRELN PRIGTFDLKY ENSBTAP00000011125/1-621 FATGLSVYLY ARALKAPQDE LSPASSGNAI YDFFIGRELN PRIGTFDLKY ENSTTRP00000011060/1-621 FSVVLSVYLY ARALKAPRDE LSPASSGNAV YDFFIGRELN PRIGTFDLKY bmy_10530T0/1-450 ---------- ---LKAPKK- ---------- ---------- ---------- BACU001668/1-630 FSVVLSVYLY ARALKAPRDE LSPASSGNAV YDFFIGRELN PRIGTFDLKY 401 450 ENSP00000339883/1-615 FCELRPGLIG WVVINLVMLL AEMKIQDRAV PSLAMILVNS FQLLYVVDAL ENSBTAP00000011125/1-621 FCELRPGLIG WVVINLVMLL AEMKEQNRAV PSLAMILVNS FQLLYVVDAL ENSTTRP00000011060/1-621 FCELRPGLIG WVVINLVMLL AEMKLQHRTV PSLAMILVNS FQLLYVVDAL bmy_10530T0/1-450 -------MVG YVL------- ---------- ---------- ---------- BACU001668/1-630 FCELRPGLIG WVVINLVMLL AEMKLQDRTV PSLAMILVNS FQLLYVVDAL 451 500 ENSP00000339883/1-615 WNEEALLTTM DIIHDGFGFM LAFGDLVWVP FIYSFQAFYL VSHPNEVSWP ENSBTAP00000011125/1-621 WNEEALLTTM DIIHDGFGFM LAFGDLVWVP FIYSFQAFYL VSHPNELSWP ENSTTRP00000011060/1-621 WNEEALLTTM DIIHDGFGFM LAFGDLVWVP FIYSFQAFYL VSHPNELSWP bmy_10530T0/1-450 --QEALLTTM DIIHDGFGFM LAFGDLVWVP FIYSFQAFYL VSHPNELSWP BACU001668/1-630 WNEEALLTTM DIIHDGFGFM LAFGDLVWVP FIYSFQAFYL VSHPNELSWP 501 550 ENSP00000339883/1-615 MASLIIVLKL CGYVIFRGAN SQKNAFRKNP SDPKLAHLKT IHTSTGKNLL ENSBTAP00000011125/1-621 MASLIIALKL CGFVIFRCAN SQKNAFRKNP ADPRLAHLKT IHTSTGKNLL ENSTTRP00000011060/1-621 MASLIIALKL CGFVIFRCAN SQKNAFRKNP SDPKLAHLKT IHTSTGKNLL bmy_10530T0/1-450 MASLIIALKL CGFVIFRCAN SQKNAFRKNP TDPKLAHLKT IHTSTGKNLL BACU001668/1-630 MASLIIALKL CGFVIFRCAN SQKNAFRKNP TDPKLAHLKT IHTATGKNLL 551 600 ENSP00000339883/1-615 VSGWWGFVRH PNYLGDLIMA LAWSLPCGFN HILPYFYIIY FTMLLVHREA ENSBTAP00000011125/1-621 VSGWWGFVRH PNYLGDLIMA LAWSLPCGFN HILPYFYVIY FTILLVHREA ENSTTRP00000011060/1-621 VSGWWGFVRH PNYLGDLIMA LAWSLPCGFS HVLPYFYVIY FTILLVHREA bmy_10530T0/1-450 VSGWWGFVRH PNYLGDLIMA LAWSLPCGFN HILPYFYVIY FTILLVHREA BACU001668/1-630 VSGWWGFVRH PNYLGDLIMA LAWSLPCGFN HILPYFYVIY FTILLVHREA 601 650 ENSP00000339883/1-615 RDEYHCKKKY GVAWEKYCQR VPYRIFPYIY ENSBTAP00000011125/1-621 RDEHHCRKKY GLAWEKYCQR VPYRIVPYIY ENSTTRP00000011060/1-621 RDERHCRKKY GLAWEKYCQR VPYRIFPYIY bmy_10530T0/1-450 RDEHHCRKKY GLAWEKYCQR VPYRIFPYIY BACU001668/1-630 RDEHHCRKKY GLAWEKYCQR VPYRIFPYIY