KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:07 2014 Check: 00 .. Name: ENSP00000265245/1-658 Len: 1115 Check: 7683 Weight: 1.00 Name: ENSBTAP00000011134/1-652 Len: 1115 Check: 8183 Weight: 1.00 Name: BACU016493/1-961 Len: 1115 Check: 6772 Weight: 1.00 Name: bmy_16521T0/1-662 Len: 1115 Check: 1861 Weight: 1.00 Name: ENSTTRP00000000525/1-653 Len: 1115 Check: 3391 Weight: 1.00 // 1 50 ENSP00000265245/1-658 ---------- ---------- ----MGRRRA PAGGSLGRAL MRHQTQRSRS ENSBTAP00000011134/1-652 ---------- ---------- ----MGRRRA PEGGTLGRAL IRQQVQRSRS BACU016493/1-961 ---------- ---------- ----MGRRRA PEAETLGRAL IRQQVQRSRS bmy_16521T0/1-662 MHKFGSPKTR SGSGKEDLYA DGAAMGRRRA PEAGTLGRAL IRQQVQRSRS ENSTTRP00000000525/1-653 ---------- ---------- ----MGRRRA PEAGTLGRAL IRQQVQRSRS 51 100 ENSP00000265245/1-658 HRHTDSWLHT SELNDGYDWG RLNLQSVTEQ SSLDDFLATA ELAGTEFVAE ENSBTAP00000011134/1-652 HRHTDSWLHT SELNDGYDWG RLNLQSVTEQ SSLDDFLATA ELAGTEFVAE BACU016493/1-961 HRPTDSWLHT SELNDGYDWG RLNLQSVTEQ SSLDEFLATA ELAGTEFVAE bmy_16521T0/1-662 HRHTDSWLHT SELNDGYDWG RLNLQSVTEQ SSLDDFLATA ELAGTEFVAE ENSTTRP00000000525/1-653 HRHTDSWLHT SELNDGYDWG RLNLQSVTEQ SSLDDFLATA ELAGTEFVAE 101 150 ENSP00000265245/1-658 KLNIKFVPAE ARTGLLSFEE SQRIKKLHEE NKQFLCIPRR PNWNQNTTPE ENSBTAP00000011134/1-652 KLNIKFVPPE ARTGLLSFEE NQRIKKLHEE NKQFLCIPRR PKWDQKTSPE BACU016493/1-961 KLNIKFVPPE ARTGLLSFEE NQRIKKLHEE NKQFLCIPRR PKWDQKTSPE bmy_16521T0/1-662 KLNIKFVPPE ARTGLLSFEE NQRIKKLHEE NKQFLCIPRR PKWDQKTSPE ENSTTRP00000000525/1-653 KLNIKFVPPE ARTGLLSFEE NQRIKKLHEE NKQFLCIPRR PKWDQNTSAE 151 200 ENSP00000265245/1-658 ELKQAEKDNF LEWRRQLV-- ---------- ---------- -------RLE ENSBTAP00000011134/1-652 ELKQAEKDNF LEWRRQLV-- ---------- ---------- -------WLE BACU016493/1-961 ELKQAEKDNF LEWRRQLV-- ---------- ---------- -------R-- bmy_16521T0/1-662 ELKQAEKDNF LEWRRQLVRE MVDFILQVQI GVCANRIALC TCVLAQRWLE ENSTTRP00000000525/1-653 ELKQAEKDNF LEWRRQLV-- ---------- ---------- -------RLE 201 250 ENSP00000265245/1-658 EEQKLILTPF ERNLDFWRQL WRVIERSDIV VQIVDARNPL LFRCEDLECY ENSBTAP00000011134/1-652 EEQNLILTPF ERNLDFWRQL WRVIERSDIV VQIVDARNPL LFRCEDLECY BACU016493/1-961 ---------- ---------- -------DIV VQIVDARNPL LFRCEDLECY bmy_16521T0/1-662 EEQDLILTPF ERNLDFWRQL WRVIERSDIV VQIVDARNPL LFRCEDLECY ENSTTRP00000000525/1-653 EEQNLILTPF ERNLDFWRQL WRVIERSDIV VQIVDARNPL LFRCEDLECY 251 300 ENSP00000265245/1-658 VKEMDANKEN VILINKADLL TAEQRSAWAM YFEKEDVKVI FWSALAGAIP ENSBTAP00000011134/1-652 VKTIDDNKEN VILINKADLL TAEQRSAWAE FFKKENVKVI FWSALAEAIK BACU016493/1-961 VKTIDDNKEN VILINKADLL TTEQRSAWTE FFEKENVKVI FWSALSEAIQ bmy_16521T0/1-662 VKTIDDNKEN IILINKADLL TTEQRSAWAE FFEKENVKVI FWSALSEAIQ ENSTTRP00000000525/1-653 VKTVDDNKEN VILINKADLM TAEQRSAWAE FFEKENVKVI FWSALSEAIQ 301 350 ENSP00000265245/1-658 LNGDSEEEAN RDDRQSNTTK FGHSSFDQAE ISHSESEHLP ARDSPSLSEN ENSBTAP00000011134/1-652 LMGNSKEDVN GDTGEAITAE FENSSCDEAE ILHKETEHL- -----SLGEA BACU016493/1-961 LIGDSKEEVN GDSGEAITAE FENSSCDEAE ILHKETEHL- -----SLNEV bmy_16521T0/1-662 LIGDSKEEVN GDSGEAITAE FENSSCDEAE ILHEETEHL- -----SLNEV ENSTTRP00000000525/1-653 LIDDSKEEVN GDSAEAITAE FENSSCDEAE TLHKETEHL- -----SVNEV 351 400 ENSP00000265245/1-658 PTTDEDDSEY EDCPEEEEDD WQTCSEE-DG PKEEDCSQDW KESSTADSEA ENSBTAP00000011134/1-652 ASSEEDESEY EDCQ-EEEED WQTCLEDSSS SDEEACGQDC KEGHTVDSEA BACU016493/1-961 ARSDEDDSEY EDCREEEEED WQTCSEEGSS PDEEACGQDW QESCTVDSEA bmy_16521T0/1-662 GRSDEDDSEY EDCREEEEED WQTCSEEGSS PDEEACGQDW QESCTVDSEA ENSTTRP00000000525/1-653 ARSDEDDSEY EDCW-QEEED WQTCSEEGSG PDEQACGQDW KERCTVRSEA 401 450 ENSP00000265245/1-658 RSRKTPQKRQ IHNFSHLVSK QELLELFKEL HTGRKVKDGQ LTVGLVGYPN ENSBTAP00000011134/1-652 QGRNTPQKRQ IHNFSHLVSK QELLEVFKQL HSGKKVKDGQ LTVGLVGYPN BACU016493/1-961 QGRKTPQKRQ IRNFSHLVSK QELLEIFKQL HSGKKVKNGQ LTVGLVGYPN bmy_16521T0/1-662 QGRKTPQKRQ ICNFSHLVSK QELLEIFKQL HSGKKVKNGQ LTVGLVGYPN ENSTTRP00000000525/1-653 QGRKTPQQRQ IHNFSHLVSK QELLEIFKQL HSGKKVKNGQ LTVGLVGYPN 451 500 ENSP00000265245/1-658 VGKSSTINTI MGNKKVSVSA TPGHTKHFQT LYVEPGLCLC DCPGLVMPSF ENSBTAP00000011134/1-652 VGKSSTINTI LGNKKVSVSA TPGHTKHFQT LYVEPGLCLC DCPGLVMPSF BACU016493/1-961 VGKSSTINTI MGNKKVSVSA TPGHTKHF-- ---------- ---------- bmy_16521T0/1-662 VGKSSTVNTI MGNKKVSVSA TPGHTKHFQT LYVEPGLCLC DCPGLVMPSF ENSTTRP00000000525/1-653 VGKSSTINTI MGNKKVSVSA TPGHTKHFQT LYVEPGLCLC DCPGLVMPSF 501 550 ENSP00000265245/1-658 VSTKAEMTCS GILPIDQMRD HVPPVSL--- ---------- -VCQNIPRHV ENSBTAP00000011134/1-652 VSTKAEMICS GILPIDQMRD HVPPVSL--- ---------- -VCQNIPRHV BACU016493/1-961 ---------- ---------- ---------- ---------- ---QNIPRRV bmy_16521T0/1-662 VSTKAEMICS GILPIDQMRD HLPPISLISS VLCQNFGCYS YICQNIPRRV ENSTTRP00000000525/1-653 VSTKAEMICS GILPIDQMRD HLPPISL--- ---------- -ICQNIPRHV 551 600 ENSP00000265245/1-658 LEATYGINII TPREDEDPHR PPTSEELLTA YGYMRGFMTA HGQPDQPRSA ENSBTAP00000011134/1-652 LEATYGIDII KPREDEDPRR PPTSEELLTA YGCMRGFMTA HGQPDQPRSA BACU016493/1-961 LEATYGIDII KPREDEDPQR PPTSEELLTA YGCMRGFMTA HGQPDQPRSA bmy_16521T0/1-662 LEATYGIDII KPREDEDPQR PPTSEELLTA YGCMRGFMTA HGQPDQPRSA ENSTTRP00000000525/1-653 LEATYGIDII KPREDEDPQR PPTSEELLTA YGCMRGFMTA HGQPDQPRSA 601 650 ENSP00000265245/1-658 RYILKDYVSG KLLYCHPPPG RDPVTFQHQH QRLLENKMNS DEIKMQLGRN ENSBTAP00000011134/1-652 RYILKDYVNG KLLYCHPPPG RDPVTFQYQH QRLLEKKVNG GEIKLQVVRN BACU016493/1-961 RYILKDYVNG KLLYCHPPPG RDPVTFQYQH QRLLEKKANG GEIKMQLRRN bmy_16521T0/1-662 RYILKDYVN- ---------- ---------- ---------- ---------- ENSTTRP00000000525/1-653 RYILKDYVNX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 651 700 ENSP00000265245/1-658 KKAKQIENIV DKTFFHQENV RALTKGVQAV MGYKPGSGVV TAST------ ENSBTAP00000011134/1-652 KKVYQIENVV DKAFFHQENV RALTKGVQAV MGYKPGSGLV TAAA------ BACU016493/1-961 KKANQIENVV DKTFFHQENV RALTKGVQAV MGYKPGSGLV TAATDNADGR bmy_16521T0/1-662 ---------- -------ENV RALTKGVQAV MGYKPGSGLV TAAT------ ENSTTRP00000000525/1-653 XXXXXXXXXX XXXXXXXENL RALTKGVQAV MGYKPGSGLV TAAT------ 701 750 ENSP00000265245/1-658 ---------- ---------- ---------- ---------- AS-SENGAGK ENSBTAP00000011134/1-652 ---------- ---------- ---------- ---------- VS-SERGAGK BACU016493/1-961 SASTNRTSLR AVREDVCYGP LVSFSFWQTL DHGQKTILFW AS-EEPGKGT bmy_16521T0/1-662 ---------- ---------- ---------- ---------- VS-SETGXGK ENSTTRP00000000525/1-653 ---------- ---------- ---------- ---------- VSRSETGAGK 751 800 ENSP00000265245/1-658 ---------- -PWKKH---- ---------- ---------- ---------- ENSBTAP00000011134/1-652 ---------- -PWKKH---- ---------- ---------- ---------- BACU016493/1-961 ETLPEGGSGG EPYGRLLYLR CGKKSGRDQS ALCAACCLLT SLCDTIGAIL bmy_16521T0/1-662 ---------- -PWKKH---- ---------- ---------- ---------- ENSTTRP00000000525/1-653 ---------- -PWKKH---- ---------- ---------- ---------- 801 850 ENSP00000265245/1-658 ---------- ---------- ---------- ---------- GNRNKKEK-- ENSBTAP00000011134/1-652 ---------- ---------- ---------- ---------- GNRNKKEK-- BACU016493/1-961 AKQLTIQVFT GAYLAAVDLV NFVSILFPVC SSKVKSSSGR GSRERKRRRQ bmy_16521T0/1-662 ---------- ---------- ---------- ---------- GNRNKKEK-- ENSTTRP00000000525/1-653 ---------- ---------- ---------- ---------- GNRNKKEK-- 851 900 ENSP00000265245/1-658 ---------- ---------- ---------- ----SRRLYK HL-------- ENSBTAP00000011134/1-652 ---------- ---------- ---------- ----SRRLYK HL-------- BACU016493/1-961 LRASIFALVL PLSLGPGWAL WAAVPKASGL IRGPQRRLLG SLVQDNTEIL bmy_16521T0/1-662 ---------- ---------- ---------- ----SRRLYK HL-------- ENSTTRP00000000525/1-653 ---------- ---------- ---------- ----SRRLYK HL-------- 901 950 ENSP00000265245/1-658 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011134/1-652 ---------- ---------- ---------- ---------- ---------- BACU016493/1-961 GYLLGGIAAL GSWASRIPQL SRICWGRTFP SIYLWTRLLS ALAGLLYASA bmy_16521T0/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000525/1-653 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000265245/1-658 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011134/1-652 ---------- ---------- ---------- ---------- ---------- BACU016493/1-961 IVAHDRRPEY LLRATPWFLT SLGRAALDLA NSDWVPLTTL PYCKPLKRMA bmy_16521T0/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000525/1-653 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000265245/1-658 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011134/1-652 ---------- ---------- ---------- ---------- ---------- BACU016493/1-961 AVSRYLELTI EPVQQASCSA TRLPGDGQTS TGATSLQEPP SYPPVQVIRA bmy_16521T0/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000525/1-653 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000265245/1-658 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011134/1-652 ---------- ---------- ---------- ---------- ---------- BACU016493/1-961 RVSSSSSSQV SSINSDLEQK YWEALNSEQW DPEDVNLGGN KDNMEIFRPR bmy_16521T0/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000525/1-653 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000265245/1-658 ---------- ---DM ENSBTAP00000011134/1-652 ---------- ---DM BACU016493/1-961 VHRWSMKPVD LISDK bmy_16521T0/1-662 ---------- ---DT ENSTTRP00000000525/1-653 ---------- ---DT