KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:07 2014 Check: 00 .. Name: ENSP00000273173/1-594 Len: 992 Check: 6016 Weight: 1.00 Name: ENSBTAP00000011136/1-609 Len: 992 Check: 8800 Weight: 1.00 Name: ENSTTRP00000005077/1-583 Len: 992 Check: 4495 Weight: 1.00 Name: bmy_20315T0/1-925 Len: 992 Check: 318 Weight: 1.00 Name: BACU014621/1-619 Len: 992 Check: 600 Weight: 1.00 // 1 50 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ---------- bmy_20315T0/1-925 LSERSALGKG FEASGSTSSP GVAFRAAHTS ECVSEARPAA AESCLNTPLG BACU014621/1-619 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ---------- bmy_20315T0/1-925 TAGPSCGDMA PQIPSIWGPP ALKTQSRQKQ NSWVGPLQVG LGTGAGTLSL BACU014621/1-619 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ---------- bmy_20315T0/1-925 EGWEDFPQWR WSTDGEAGAP GAGDSLRGGM GLAYVEIFPA CLAPSVPRAC BACU014621/1-619 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ---------- bmy_20315T0/1-925 GHLCPRSGML FLPIPPHPGP PHPIVTLLPR HRGTQGFCFQ GSGWAWLVVL BACU014621/1-619 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ---------- bmy_20315T0/1-925 SPGRRDWEGV EGGNYDDTWQ LCGRILSADV DRACSAVGSL WKERAVLPGS BACU014621/1-619 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ---------- bmy_20315T0/1-925 FPLSTLRTNC LGPVHLAGDI WEQGLQGLAN CQAAVGIQVM LWGTLKGTLP BACU014621/1-619 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000273173/1-594 ---------- ---------- ---------- ---------- ----MAGEEN ENSBTAP00000011136/1-609 ---------- ---------- ---------- ---------- ----MAKENS ENSTTRP00000005077/1-583 ---------- ---------- ---------- ---------- ----MAKENN bmy_20315T0/1-925 GKLAPGPKAK SLEDLHLLLL VAKGCPNPEP LQPRLVSPLC CCSKMAKENN BACU014621/1-619 ---------- ---------- ---------- ---------- ----MAKENN 351 400 ENSP00000273173/1-594 FKEELRSQDA SRNLNQHEVA GHPHSWSLEM LLRRLRAVHT KQDDKFANLL ENSBTAP00000011136/1-609 LKIEFKSHPH PRNLHQHDGA ESPRSCSLDM LLQRLRAIDA -QDDKLTNIM ENSTTRP00000005077/1-583 FKVEFKSQHH LRSFHQHEAA ESPRSCSLDM LLRRLRAIEA KQDDKFATIM bmy_20315T0/1-925 FKVEFKAQHH LRSFHQHEAA ESPRSCSLDM LLCRLRAIEA KQDDKFATIM BACU014621/1-619 FKVEFKFQHH LRSFHRHEAA ENPRSCSLDM LLRRLRAIEA KQDDKFATIM 401 450 ENSP00000273173/1-594 DAVGEFGTFQ QRLVALTFIP SIMSAFFMFA DHFVFTAQKP YCNTSWILAV ENSBTAP00000011136/1-609 DVVGEFGTFQ RRLVALNFIP NFLASFFMFA DIFLFTPQKP YCNTSWILAV ENSTTRP00000005077/1-583 DAVGEFGTFQ RRLVALTFIP NILSTFFLFA DIFVFTPQKP YCNTSWILAV bmy_20315T0/1-925 DAVGEFGTFQ RRLVALTFIP NILSAFFLFA DLFVFTPQKP YCNTSWILAV BACU014621/1-619 DAVGEFGTFQ RRLVALTFIP NILSAFFLFA DIFVFTPQKP YCNTSWILAV 451 500 ENSP00000273173/1-594 GPHLSKAEQL NLTIPQAPNG SFLTCFMYLP VPWNLDSIIQ FGLNDTDTCQ ENSBTAP00000011136/1-609 DSNLTEAEQM NLTLPRAPNG SFLTCLMYVP VEWDLHSIIQ FGLNHTDSCQ ENSTTRP00000005077/1-583 GPNLMESERL NLTLPQAPNG SFLTCLMYLP VDWDLESIIH FGLNRRDSCQ bmy_20315T0/1-925 GPNLPESEQL NLTLPRAPNG SFLTCLMYLP ---------- ---------- BACU014621/1-619 GPNLSESERL NLTLPRAPNG SFLTCLMYLP VDWDLDSIIH FGLNRTDSCQ 501 550 ENSP00000273173/1-594 DGWIYPDAKK RSLINEFDLV CGMETKKDTA QIMFMAGLPI GSLIFRLITD ENSBTAP00000011136/1-609 NGWIYPEMKR RSLINEFDLV CGGEPNKEIV HTMFLAGLLT GAFFFGFITD ENSTTRP00000005077/1-583 DGWIYPEVKK QSLINEFDLV CGKEPNPEIV QNMYLAGLLT GSFLFGFITD bmy_20315T0/1-925 ---------- ------FDLV CGKEPNPEIV RNMYLAGLLT GSFLFGFITD BACU014621/1-619 DGWIYPEVKK RSLINEFDLV CGKEPNPEIV RNMYLAGLLT GSFLFGFITD 551 600 ENSP00000273173/1-594 KMGRYPAILL SLLGLIIFGF GTAFMNSFHL YLFFRFGISQ SVVGYAISSI ENSBTAP00000011136/1-609 KLGRYPTILL SLLELMIFGF GTAFVSSFNQ YIFFRFCVSQ AVVGYAISSS ENSTTRP00000005077/1-583 KLGRHPSILL WLLGLIIFGF GTAFVNSFHQ YLFFRFGVSQ AAVGYAVSGA bmy_20315T0/1-925 KLGRHPSILL SLLGLIIFGF GTAFVNSFHQ YLFFRFGVSQ AAVGYAISSA BACU014621/1-619 KLGRHPSILL SLLGLIIFGF GTAFVNSFHQ YLFFRFGVSQ AAVGYAISSA 601 650 ENSP00000273173/1-594 SLATEWLVGE HRAHAIILGH CFFAVGAVLL TGIAYSLPHW QLLFLVGGIL ENSBTAP00000011136/1-609 ALLTEWLMGM YRAYAFILGH CFFAMGVVFL TGLSYSLPHW RLLFLLGGTP ENSTTRP00000005077/1-583 SLIAEWLVGM RRAHAITLGH CFFAMGVIFL TGLGYSLPHW RLLFLVSGTP bmy_20315T0/1-925 SLITEWLVGM HRAHAIILGH CFFAMGVIFL TGLAYSLPHW RLLFLV---- BACU014621/1-619 SLITEWLVGM HRAHAIILGH CFFAMGVIFL TGLAYSLPHW RLLFLVGGAP 651 700 ENSP00000273173/1-594 VIPFISYIWI LPESPRWLMM KGKVKEAKQV LCYAASVNKK TIPSNLLDEL ENSBTAP00000011136/1-609 IFPLICYIWI LPESPRWLIM KGKLEEAKQV LCYAAGVNKK TIPLSLLDKL ENSTTRP00000005077/1-583 VFPLI--IWI LPESPRWLMM KGKLKEAKQV LCYAAGVNKK TIPVSLLDKL bmy_20315T0/1-925 ---------- --ESPRWLMM KGKLKEAKQV LCYAAGVNKK TIPLSLLDKL BACU014621/1-619 VFPLISYTWI LPESPRWLMM KGKLKEAKQV LCYAAGVNKK TIPLSLLDKL 701 750 ENSP00000273173/1-594 QLPRKKVTRA SVLDFCKNRQ LCKVTLVMSC V--------- WFTVSYTYFT ENSBTAP00000011136/1-609 QLPGKKVASA SILDFYSNKD LRKLTLVMCS I--------- WFAVGCNYYM ENSTTRP00000005077/1-583 QLPGKKVTTA SILDFYSNRH LRKVTLVMCS M--------- WLAIGCNYYM bmy_20315T0/1-925 QLPGKKVTTA SILDFYSNRH LRKVTLVLCS MCVSLLAMNS RFAIGCNYYM BACU014621/1-619 QLPGKKVTMA SILDFYSNRH LRKVTLVLCS M--------- WFAIGCNYYM 751 800 ENSP00000273173/1-594 LSLRMRELGV SVHFRHVVPS IMEVPARLCC IFLLQQIGRK WSLAVTLLQA ENSBTAP00000011136/1-609 LGLKIKELGV DIYLTQVIPG MMEVPARLCC IFLIEQLKRR RTLIVTLFQG ENSTTRP00000005077/1-583 LSLRMKELGV NIHFTQVIPG MMQVPARLCC IFLLEQLKRK RSLILTFFQG bmy_20315T0/1-925 LSLRMKELVV NTHFTQVIPG MMEVPARLCC VFLLEQLKRK RSLVLTFLQG BACU014621/1-619 LSLRMKELGV NTHFAQVIPG MMEVPAQLCC IFLLEQLKRK RSLVLTFLQG 801 850 ENSP00000273173/1-594 IIWCLLLLFL PEGEDGLRLK WPRCPATELK SMTILVLMLR EFSLAATVTV ENSBTAP00000011136/1-609 AIMCFLSLTL PS-------- -------ELK SLVVLITLLG EFNLAASITM ENSTTRP00000005077/1-583 ALMCFLSLLL PSGEG----- WPHCLATELK SLLVLIIVLG EFSLAATVTV bmy_20315T0/1-925 ALTCFLSLLL PS-------- -------ELK SLLVLIIVLG EFSLAATVTV BACU014621/1-619 ALTCFLSLLL PA-------- -------ELK SPLVLIIVLG EFSLAATVTV 851 900 ENSP00000273173/1-594 FFLYTAELLP TVLRATGLGL VSLASVAGAI LSLTIISQTP SLLPIFLCCV ENSBTAP00000011136/1-609 FYIYTSELFP TVLRATGLGL VSLVWAAGGI SSLTLVSQNI AILAIILCCL ENSTTRP00000005077/1-583 FYIYPSELLP TVLRATGLGL LSLVWAAGGI SS-SIVNQNI AILPVFLCCI bmy_20315T0/1-925 FYIYTSELLP TVLRATGLGL LTLVWAAGGI SSLIVVNQNI AILPVFLCCI BACU014621/1-619 FYIYTSELLP TVLRATGLGL LTLVWAAGGI SSLIVINQNI AILPIFLCCI 901 950 ENSP00000273173/1-594 LAIVAFSLSS LLPETRDQPL SESLNHSSQI RNKV------ KDMKTKETSS ENSBTAP00000011136/1-609 SALVALFYCS SMPETQDQPL PDTLEHIAPH TSSFSRSI-S EELSNEDMLS ENSTTRP00000005077/1-583 SAFVALFFCV KLPETQDQPI PDSLEHLPPE RRTL------ ----SEDMSC bmy_20315T0/1-925 STFVALFFCV KLPETQDQPI PDSLEHLPPE RRTMSEDMSS EDMSSEDMLC BACU014621/1-619 SAFVALFFCF KLPETQDQPI PDSLEHLPPE RRTM-----S EDMSSEDMLC 951 1000 ENSP00000273173/1-594 DDV------- ---------- ---------- ---------- -- ENSBTAP00000011136/1-609 DDVTEEAAKN TILNARLTSI DHDGLSSPS- ---------- -- ENSTTRP00000005077/1-583 DDVR------ ---------- ---------- ---------- -- bmy_20315T0/1-925 DDVTEEVARN TIFNAMMTNM DQDSLSNLSL QSEEEEIDKQ ED BACU014621/1-619 DDVTEEVARN TIFNATMTNM DQDSLSNLSL QSGEEEIDKQ ED