KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:09 2014 Check: 00 .. Name: ENSP00000333657/1-715 Len: 857 Check: 8846 Weight: 1.00 Name: ENSBTAP00000011146/1-710 Len: 857 Check: 1873 Weight: 1.00 Name: ENSTTRP00000000640/1-461 Len: 857 Check: 2406 Weight: 1.00 Name: bmy_13635T0/1-679 Len: 857 Check: 8705 Weight: 1.00 Name: BACU004406/1-855 Len: 857 Check: 9005 Weight: 1.00 // 1 50 ENSP00000333657/1-715 ---------- -MSKAHKPWP YRRRSQFSSR KYLKKE---- ---MNSFQQQ ENSBTAP00000011146/1-710 ---------- -MSMSFRPLK YKRHTQTSTQ HHPKQD---- ----IYFHQQ ENSTTRP00000000640/1-461 ---------- --------VP KPYMSSVSSQ HCPKEE---- ---MNSFQQQ bmy_13635T0/1-679 ---------- ---------- ---------- ---------- ---MNSFQQQ BACU004406/1-855 MRPAAAGTLK AAFFIFASLC AWYSGYLLAE LIPDLPLSSA VYSIRSIGER 51 100 ENSP00000333657/1-715 P--PPFGTVP PQMMF----P PN------WQ GAEKDA---- AF-------- ENSBTAP00000011146/1-710 P----PGPPL GQTMS----P PQ------WQ VEESNP---- DF-------- ENSTTRP00000000640/1-461 P-LLPPSAAP GQMMY----P PN------WQ GRGKDP---- VF-------- bmy_13635T0/1-679 P-LRPPGAAP GQVMY----P PN------WQ GGGTDP---- VF-------- BACU004406/1-855 PVLKAPAPKR QKCDHWTPCP PNTYAYRLLS GGGRDKYAKI CFEDEVLIGE 101 150 ENSP00000333657/1-715 ----LAKDFN FLTLNN---- ---------- ---------- ---------- ENSBTAP00000011146/1-710 ----LPNNFN QLNLDP---- ---------- ---------- ---------- ENSTTRP00000000640/1-461 ----LAKGFN LLNLNH---- ---------- ---------- ---------- bmy_13635T0/1-679 ----LAKDFN LLNLNH---- ---------- ---------- ---------- BACU004406/1-855 KTGNVARGIN IAIVNYVTGK VTATQYFDMY EGDNSGPMTN FIQSAPSKSL 151 200 ENSP00000333657/1-715 ---------- ---------- ---------- ---------- ------QPPP ENSBTAP00000011146/1-710 ---------- ---------- ---------- ---------- ------QQPE ENSTTRP00000000640/1-461 ---------- ---------- ---------- ---------- ------QQPG bmy_13635T0/1-679 ---------- ---------- ---------- ---------- ------QQPE BACU004406/1-855 LFMVTHDDGS SRLKEDVKRA IEALGSKEIR NMRFRSSWVF LAAKGFELPA 201 250 ENSP00000333657/1-715 GNRSQPRA-- ---------- ----MGPENN LYSQYEQKVR PCIDLIDSLR ENSBTAP00000011146/1-710 AKGGQQMS-- ---------- ----KGPENN LYRKYEEKVR PCIDLIDSLR ENSTTRP00000000640/1-461 GNRDGQTS-- ---------- ----KGLENN LYNQYEEKVR PCIDLIDSLR bmy_13635T0/1-679 GNRDQQMS-- ---------- ----KGPENN LYNQYEEKVR PCIDLIDSLR BACU004406/1-855 GIQREKVNHS DNVKNRYPGW PAEIQGPENN LYSQYEEKVR PCIDLIDSLR 251 300 ENSP00000333657/1-715 ALGVEQDLAL PAIAVIGDQS SGKSSVLEAL SGVALPRGSG IVTRCPLVLK ENSBTAP00000011146/1-710 ALGVEQDLAL PAIAVIGDQS SGKSSVLEAL SGVALPRGSG IITRCPLVLK ENSTTRP00000000640/1-461 ALGVEQGLAL PAIAVTGDQS SGKSSVLEAL -GVALPRGSG IITRCPRVLK bmy_13635T0/1-679 ALGVEQDLAL PAIAVIGDQS SGKSSVLEAL SGVALPRGSG IITRCPLVLK BACU004406/1-855 ALGVEQDLAL PAIAVIGDQS SGKSSVLEAL SGVALPRGSG IITRCPLVLK 301 350 ENSP00000333657/1-715 LKKQPCEAWA GRISYRNTEL ELQDPGQVEK EIHKAQNVMA GNGRGISHEL ENSBTAP00000011146/1-710 LTKRECE-WT GKITYRNITQ QLQNPSEVEW EIRRAQNIIA GNGLGISHEL ENSTTRP00000000640/1-461 LTKQECK-WT GRISCRKTEL QVQDP-RVER EIRKAQDAVA GNGVGISHEL bmy_13635T0/1-679 LTKQEFR-WA GRISYRKTEL QLQEPSQVER EIRKAQDIIA GNGVGISHEL BACU004406/1-855 LTKQEFR-WA GKISYRKTEL QLQDPSQVER EIRKAQDVIA GNGVGISHEL 351 400 ENSP00000333657/1-715 ISLEITSPEV PDLTIIDLPG ITRVAVDNQP RDIGLQIKAL IKKYIQRQQT ENSBTAP00000011146/1-710 INLEITSPEV PDLTLIDLPG ITRVAVENQP QDIGLQIKAL IKKYIQRQET ENSTTRP00000000640/1-461 IGLEITSPQV LDLTLLDLPG ITRVAVGNQP HDVGLQIKAL IKKYIQRQQT bmy_13635T0/1-679 ISLEITSPEV PDLTLIDLPG ITRVAVGNQP HDIGL----- -----QRQQT BACU004406/1-855 ISLEITSPEV PDLTLIDLPG ITRVAVGNQP HDIGLQIKAL IKKYIQRQQT 401 450 ENSP00000333657/1-715 INLVVVPCNV DIATTEALSM AHEVDPEGDR TIGILTKPDL MDRGTEKSVM ENSBTAP00000011146/1-710 INLVVVPCNV DIATTEALSM AQEVDPDGDR TIGILTKPDL VDKGTEKGVL ENSTTRP00000000640/1-461 ISFVVVPCNV DIATTEALSM AQEVDPDGDR TIGILTKPDL VDKGAEKGVL bmy_13635T0/1-679 INLVVVPCNV DIATTEALSM AQEVDPDGDR TIGILTKPDL VDKGTEKGVL BACU004406/1-855 INLVVVPCNV DIATTEALSM AQEVDPDGDR TIGILTKPDL VDKGTEKGVL 451 500 ENSP00000333657/1-715 NVVRNLTYPL KKGYMIVKCR GQQEITNRLS LAEATKKEIT FFQTHPYFRV ENSBTAP00000011146/1-710 KVMQNLTYHL KKGYMIVKCR GQQDITNKLS LAEATRKETM FFETHPYFRV ENSTTRP00000000640/1-461 KVMQDLTYHL KRGYMIVKCR GQQEVTNKLS LAEATKEEMM FFQTHPHFXX bmy_13635T0/1-679 KVMQNLTYRL KKGYMIVKCR GQQEVTNKLS LAEATKKEMM FFQTHPYFRV BACU004406/1-855 KVVQNLTYRL KKGYMIVKCR GQQEVTNKLS LAEATKKEMM FFQTHPYFRV 501 550 ENSP00000333657/1-715 LLEEGSATVP RLAERLTTEL IMHIQKSLPL LEGQIRESHQ KATEELRRCG ENSBTAP00000011146/1-710 LLDEGKATVP LLAERLTTEL IWHINKSLPL LENQIKEKHQ RATEELQQYG ENSTTRP00000000640/1-461 XXXXXXXXXX XXXXXXXXXX XXXXXKLLPL LENQIKESHQ RATEELRQCR bmy_13635T0/1-679 LLEERKATVP CLAERLTTEL IWHINKSLPL LENQLKESHQ RATEELRQCG BACU004406/1-855 LLEEGKATVP CLAERLTTEL IWHINKSLPL LENQLKESHQ RATEELRQCG 551 600 ENSP00000333657/1-715 ADIPSQEADK MFFLIEKIKM FNQDIEKLVE GEEVVRENET RLYNKIREDF ENSBTAP00000011146/1-710 DDIPSDEGDK MFFLIEKIKV FNEDIGKLIE GEEIVMETES RLCNKIREEF ENSTTRP00000000640/1-461 DNLPSNEAYK MFFLIEKIKV FNQDIEKLIE GEEIVKEKES RLYNKIREEF bmy_13635T0/1-679 DNIPSNEADK MFFLIEKIKV FNQDIEKLIE GEEIVKEKES RLYNKIREEF BACU004406/1-855 DNIPSNEADK MFFLIEKIKV FNQDIEKLIE GEEIVQEKES RLYNKIREEF 601 650 ENSP00000333657/1-715 KNWVGILATN TQKVKNIIHE EVEKYEKQYR GKELLGFVNY KTFEIIVHQY ENSBTAP00000011146/1-710 TSWILILTTN IEKVKSILNE EVSKYEKKYR GKELLGFVNY KTFETVVKHY ENSTTRP00000000640/1-461 KH-ILILAAN TQK------- ---------- ---------- ---------- bmy_13635T0/1-679 KSWILILAAN TQKVKNIIHE EVSKYDKQYR GKELLGFVNY KTFEAIMKQY BACU004406/1-855 KSWILVLADN TQKVKNIIHE EVSKYDKQYR GKELLGFVSY KTFETIMKQY 651 700 ENSP00000333657/1-715 IQQLVEPALS MLQKAMEIIQ QAFINVAKKH FGEFFNLNQT VQSTIEDIKV ENSBTAP00000011146/1-710 LGQLIDPALK MLQKAMEIVW QTFKDTAKKH FAEFCNLHQT VQNKIEDIKT ENSTTRP00000000640/1-461 ---------- ---------- ---------- ---------- ---------- bmy_13635T0/1-679 LEQLVDPALE LLQKAVEIIW QTFTDTAQKY FGGFYNLNHT VQSRIEDIKT BACU004406/1-855 LEQLVDPALK LLQKAVEIIW QTFTDTAQKS FGGFYNLNHT VQSRIEEIKT 701 750 ENSP00000333657/1-715 KHTAKAENMI QLQFRMEQMV FCQDQIYSVV LKKVREEIFN PLGTPSQNMK ENSBTAP00000011146/1-710 KQMAEAANLI QLQFRMEKLV FCQDQIYGVV LNKVREDIFN SMGKASETPQ ENSTTRP00000000640/1-461 ---------- ---------- ---------- ---------- ---------- bmy_13635T0/1-679 KQAETAENLI RLQFRMEQLI YCQDQIYSVV LNKVREEIFN PVEKPPQNLQ BACU004406/1-855 KQAETAENLI RLQFRMEQMI YCQDQIYSVV LGKIREEIFN PVEKPPQNLQ 751 800 ENSP00000333657/1-715 LNSHFPSNES SVSSFTEIGI HLNAYFLETS KRLANQIPFI IQYFMLRENG ENSBTAP00000011146/1-710 SKQPFLNDQS SISSIVEIGV HLNAYFMETS KRLANQIPFI IQYFMLQENG ENSTTRP00000000640/1-461 ---------- ---------- ---------- ---------- ---------- bmy_13635T0/1-679 SKSSLLNDPP SFSSIVEIWV HLNAYFSETS KRLANQIPFI IQYFMLRENG BACU004406/1-855 SKSSLLNDPP SVSSIVEIWV HLNAYFSETS KRLANQIPFI IQYFMLRENG 801 850 ENSP00000333657/1-715 DSLQKAMMQI LQEKNRYSWL LQEQSETATK RRILKERIYR LTQARHALCQ ENSBTAP00000011146/1-710 DKVQKAMMQL LQDTQHYSWL LQEQSDTATK RKFLKEKIFR LTQAQQALYE ENSTTRP00000000640/1-461 ---------- ---------- ---------- ---------- ---------- bmy_13635T0/1-679 DYLQKAMMQI LQEKQHYTWL LQEQSDTTAK RKLLKEKIHR LAQARRALYE BACU004406/1-855 DYLQKAMMQI LQEKQHYTWL LQEQGDTTAK RKFLQEKIYR LVQARRALYE 851 900 ENSP00000333657/1-715 FSSKEIH ENSBTAP00000011146/1-710 FPHFKG- ENSTTRP00000000640/1-461 ------- bmy_13635T0/1-679 FPQLRG- BACU004406/1-855 FPHLKV-