KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:10 2014 Check: 00 .. Name: ENSP00000376220/1-1031 Len: 1297 Check: 3391 Weight: 1.00 Name: ENSTTRP00000015046/1-1024 Len: 1297 Check: 3331 Weight: 1.00 Name: ENSBTAP00000011147/1-1029 Len: 1297 Check: 6799 Weight: 1.00 Name: bmy_01468T0/1-1208 Len: 1297 Check: 2052 Weight: 1.00 Name: BACU013650/1-1186 Len: 1297 Check: 3063 Weight: 1.00 // 1 50 ENSP00000376220/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015046/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011147/1-1029 ---------- ---------- ---------- ---------- ---------- bmy_01468T0/1-1208 MAAGAGTQTH PPRLHTRRTP AAAPPPHKPE TRLTNCACGK LRLLSRVAAP BACU013650/1-1186 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000376220/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015046/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011147/1-1029 ---------- ---------- ---------- ---------- ---------- bmy_01468T0/1-1208 RPLPCPTPSA GVGPPSLVRA GGGTGEVDAR APRLGRLRPL PSSQSQPRRR BACU013650/1-1186 ------MEDF DLGKPLQKAS SSVESDIKNS PHSLG--LNL STNRSSPHLS 101 150 ENSP00000376220/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015046/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011147/1-1029 ---------- ---------- ---------- ---------- ---------- bmy_01468T0/1-1208 ARARSLEFNG RERRSPNADI GIGNGGQTLL GPSDISQSEC QQLKMPLDDE BACU013650/1-1186 TNGVS-SFSG KTRPS----- -------VIQ GTVEVLTSLM QELQ-----N 151 200 ENSP00000376220/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015046/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011147/1-1029 ---------- ---------- ---------- ---------- ---------- bmy_01468T0/1-1208 ASEDDSDSVS SNSARAYIFQ DVLLHGEHCE KEFVLLVGVF FTLLLFSTRW BACU013650/1-1186 SGKTDSE--- -------LWK N-------CE ---------- -------TRW 201 250 ENSP00000376220/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015046/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011147/1-1029 ---------- ---------- ---------- ---------- ---------- bmy_01468T0/1-1208 LQLFNLVEKQ CQEQIVAQQE QFHNQIQRIQ KEIKNLVKLQ TNNASWASCD BACU013650/1-1186 LQLFNLVEKQ CQEQIVAQQE QFHNQIQRIQ KEIKNLVKLQ TNNASWASCD 251 300 ENSP00000376220/1-1031 ---------- ---MGFFSLS SERNESVIHY PESTEPEIQQ EMSTSQPDCN ENSTTRP00000015046/1-1024 ---------- ---MGFFSEN SERNESVISY PKSKEPEMQR ETSMSQPDCN ENSBTAP00000011147/1-1029 ---------- ---MGFFSEN GERNEYAISY PKSEESEMQQ EASLSQPDCN bmy_01468T0/1-1208 RSSLSRQISS ESQMGFFSEN SERNESVISY PKSKEPEMQQ ETSMSQPDCN BACU013650/1-1186 RSSLSRQISS ESQMGFFSES SERNESVISY PKSKEPEMQQ ETSMSQPDCN 301 350 ENSP00000376220/1-1031 VDSCSVSSGY GTFCISELNL YKSKDPKEFM EHIDVPKGQY VAPAVPAESL ENSTTRP00000015046/1-1024 VDSSSVSSGY GTFCVSELNT YKPKDAQEFM EHAEVSKGQF GAPVVQKESL ENSBTAP00000011147/1-1029 VDSSSVSSGY GTFCVSELNT YKSKDAQDFM EHIEASEGHF GAPVLPAEPL bmy_01468T0/1-1208 VDSSSVSSGY GTFCVSELNT YKSKDAQEFM EHAEVSKGQF GAPVVQTESL BACU013650/1-1186 VDSSSVSSGY GTFCVSELNT YKSKDAQEFM EHAEVSKGQF GAPVVQTESL 351 400 ENSP00000376220/1-1031 VDGVKNENFY IQTPEECHVS LKEDVSISPG EFEHNFLGEN KVSEVYSGKT ENSTTRP00000015046/1-1024 VDGVKNQSFY IHTNEEFCAS LKEDTPIFPG EFEHSFLGEN KISEVYSGKT ENSBTAP00000011147/1-1029 GDGVRTQSFY IHPNEEFCAS LKEDTPIFPS EFEHSFLGES KISEVSSGKT bmy_01468T0/1-1208 VDGVKNQSFY VHTNEEFCAS LKEDTPIFPG EFEHSFLGEN KILE------ BACU013650/1-1186 VDGVKNQSFY IHTNEEFCAS LKEDTPIFPG EFEHSFLGEN KILEVYSGKT 401 450 ENSP00000376220/1-1031 NSNAITSWAQ KLKQNQPKRA HVEDGGSRSK QGNEQSKKTP IEKSDFAAAT ENSTTRP00000015046/1-1024 DNKSITSWAQ KLKQNQPKRA HKEEGCSKPM QGNEQTRKSP IEKSDFTAAT ENSBTAP00000011147/1-1029 NNKLITSWAQ RLKQNQPKRA HKEEGYSKSM QGDEQTKKSP IEKSDFTADT bmy_01468T0/1-1208 ---------- ---------- ---------- ---------- ---SDFTAAT BACU013650/1-1186 DNKSITSWAQ KLKQNQPKRA HKEEGCSKSV QGNEQTKKSP IEKSDFTAAT 451 500 ENSP00000376220/1-1031 HPRAFYLSKP DETPNAWMSD SGTGLTYWKL EEKDMHHSLP ETLEKTFISL ENSTTRP00000015046/1-1024 HSRAFYLNKP DESPNCWMSD SGTGLTYWKL EEKDTYHSLP ET------PA ENSBTAP00000011147/1-1029 HSRAFYFNKP DEGPKSWMSD SGTGLTYWKL EEKDMYHSLP ETLEKTFAPA bmy_01468T0/1-1208 HSRAFYLNKP DEGPNSWMSD SGTGLTYWKL EEKDMYHSLP ETLEKTFAPA BACU013650/1-1186 HSRAFYLNKP DESPNYWMSD SGAGLTYWKL EEKDMYHSLP ETLEKTFVPA 501 550 ENSP00000376220/1-1031 SSTDVSPNQS NTSNEMKLPS LKDIYYKKQR ENKQLPERNL TSASNPNHPP ENSTTRP00000015046/1-1024 SSTDISPSQS NTSNEMKLPS LKDIYYKKQR ENKQLPERNL PSASNPNHPP ENSBTAP00000011147/1-1029 SSTDISPSQS NTSNEMKPPS LKDIYHKKQR ENKQLPERNL TSASNPNHPP bmy_01468T0/1-1208 SSTDVSPSQS NTSNEMKLPS LKDIYHKKQR ENKQLPERNL PSASNPNHPP BACU013650/1-1186 SSTDVSPSQS NTSNEMKLPS LKDIYHKKQR ENKQLPERNL PSASNPNHPP 551 600 ENSP00000376220/1-1031 EVLTLDPTLH MKPKQQISGI QPHGLPNALD DRISFSPDSV LEPSMSSPSD ENSTTRP00000015046/1-1024 EVLTLDPTLH LKPSQQISGI QPHGFLNALD DRISFSPDSV LEPSMASHSD ENSBTAP00000011147/1-1029 EVLTLDPTLH MKPNQQISGI QPHSFLNALD DRISFSPDSV LDPSLSSHSD bmy_01468T0/1-1208 EVLTLDPTLH MKPRQQISGI QPHGFLNALD DRISFSPDSV LEPSMASHSD BACU013650/1-1186 EVLTLDPTLH MKPSQQISGI QPHGFLNALD DRISFSPDSV LEPSMASHSD 601 650 ENSP00000376220/1-1031 IDSFSQASNV TSQLPGFPKY PSHTKASPVD SWKNQTFQNE SRTSSTFPSV ENSTTRP00000015046/1-1024 IDSFSQASHV TSQLSGFPRY PSSTKVSPXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011147/1-1029 IDLFSQASHI TSQLSGFPKY PTDAKVSPVD PWKNQAFRNE SRTSSTFPSV bmy_01468T0/1-1208 IDSFSQASHV TSQLSGFPKY PSSTKVSPVD SWKNHAFQNE SRTSSTFPAV BACU013650/1-1186 IDSFSQASHV TSQLSGFPKY PSNTKVSPVD SWKNHAFQNE SRTSSTFPAV 651 700 ENSP00000376220/1-1031 YTITSNDISV NTVDEENTVM VASASVSQSQ LPGTANSVPE CISLTSLEDP ENSTTRP00000015046/1-1024 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011147/1-1029 YTVGSNNISV STVDEENPVL GPPVSVSQSQ LPGTANGVPE CISLTSLEDP bmy_01468T0/1-1208 YTIGSNDISV NSVDEENTGL VPFASVSQSQ LPGTAGGVPE CISLTSLEDP BACU013650/1-1186 YTIGSNDISV NSVDEENTGL VPFASVSQSQ LPGTASGVPE CISLTSLEDP 701 750 ENSP00000376220/1-1031 VILS-KIRQN LKEKHARHIA DLRAYYESEI NSLKQKLEAK EISGVEDWKI ENSTTRP00000015046/1-1024 XXXX-XVRQN LKEKHARHIA DLRAYYESEI NSLKQKLEAK EIPAVEDWKK ENSBTAP00000011147/1-1029 VVLS-KIRQN LKEKHARHIA DLRAYYESEI NSLKQKLEEK EISVAEDWKK bmy_01468T0/1-1208 VILSNRVRQN LKEKHARHIA DLRAYYESEI NSLKQKLEAK EISAVEDWKK BACU013650/1-1186 VILS-KVRQN LKEKHARHIA DLRAYYESEI NSLKQKLEAK EISAVEDWKK 751 800 ENSP00000376220/1-1031 TNQILVDRCG QLDSALHEAT SRVRTLENKN NLLEIEVNDL RERFSAASSA ENSTTRP00000015046/1-1024 TNQILVDRCG QLDSALNEAT SRVRTLENKN NLLEREVSDL RERFSAASSA ENSBTAP00000011147/1-1029 TNQILADRCG QLESALNEAT SRVRTLENKN NLLEREVSDF RERFNAASSA bmy_01468T0/1-1208 TNQILVDRCG QLDSALNEAT SRVRTLENKN NLLEREVSDL RERFSAASSA BACU013650/1-1186 TNQILVDRCG QLDSALNEAT SRVRTLENKN NLLEREMSDL RERFSAASSA 801 850 ENSP00000376220/1-1031 SKILQERIEE MRTSSKEKDN TIIRLKSRLQ DLEEAFENAY KLSDDKEAQL ENSTTRP00000015046/1-1024 SKILQERIEE MRTSNKEKDN TIIRLKSRLQ DLEEAFENAY KLSDDKEARL ENSBTAP00000011147/1-1029 SKILQERIEE MRTSNKEKDN TIIRLKSRLQ DLEEAFENAY KLSDDKEARL bmy_01468T0/1-1208 SKILQERIEE MRTSNKEKDN TIIRLKSRLQ DLEEAFENAY KLSDDKEARL BACU013650/1-1186 SKILQERIEE MRTSNKEKDN TIIRLKSRLQ DLEEAFENAY KLSDDKEARL 851 900 ENSP00000376220/1-1031 KQENKMFQDL LGEYESLGKE HRRVKDALNT TENKLLDAYT QISDLKRMIS ENSTTRP00000015046/1-1024 KQENKMFQDL LGEYESLGKE HERVKXXXXX XXXXXXXXXX XXXXXXXTIS ENSBTAP00000011147/1-1029 KQENKMFQDL LGEYESLGKE HERVKDTLNI TENKLLDAHT QISDLKRTIS bmy_01468T0/1-1208 KQENKMFQD- ---------- -----DTLNK TENKLLDAHT QISDLKRTIS BACU013650/1-1186 KQENKMFQDL LGEYESLGKE HERVKDTLNK TENKLLDAHT QISDLKRTIS 901 950 ENSP00000376220/1-1031 KLEAQVKQVE HENMLSLRHN SRIHVRPSRA NTLATSDVSR RKWLIPGAEY ENSTTRP00000015046/1-1024 KLEAQVKQVE HENMLSLRHN SKTPMRPSRA NTLASSDVSR RKWLIPGAEH ENSBTAP00000011147/1-1029 KLEAQVKQVE HENMLSLRHN SKTPMRPSHA NTLAGSDVSR RKWLIPGAEH bmy_01468T0/1-1208 KLEAQVKQVE HENMLSLRHN SKTPMRPSRA NTLASSDVSR RKWLIPGAEH BACU013650/1-1186 KLEAQVKQVE HENMLSLRHN SKTPMRPSRA NTLASSDVSR RKWLIPGAEH 951 1000 ENSP00000376220/1-1031 SIFTGQPLDT QDSNVDNQLE ETCSLGHRSP LEKDSSPGSS STSLLIKKQR ENSTTRP00000015046/1-1024 SIFTGQPLDT RDSKADSQPE DTCLAGYHSP LEKDPSPGSS PTSLLIKKQR ENSBTAP00000011147/1-1029 SIFTGQPLDT ---KLDSQPE ETCLPGYHSS LEKDLSPGSS P-SLLIKKQR bmy_01468T0/1-1208 SIFTGQPLDT RDSKADSHPE DTCLPG---- ---------- ---------- BACU013650/1-1186 SIFTGQPLDT RDSKADSHLE DTCLPGYHSP LEKDPSPGSS PTSLLIKKQR 1001 1050 ENSP00000376220/1-1031 ETSDTPIMRA LKELDEGKIF KNWGTQTEKE DTSN--INPR QTETSVNASR ENSTTRP00000015046/1-1024 DT-DTPIMKA LKELDEEKVF KNWGTQTEKE DTSN--MTPR LTDTSVNASR ENSBTAP00000011147/1-1029 ETLDTPIMKA LKELDEEKVF KNWGTQTEKE DTSNKLVNPR PADSSVNASG bmy_01468T0/1-1208 DTSDTPIMKA LKELDEEKVF KNWGTQTEKE DTSNKLVTPR QTDTSVNASR BACU013650/1-1186 DTSDTPIMKA LKEFDEEKVF KNWGTQTEKE DTSNKLVTPR QTDTSVNASR 1051 1100 ENSP00000376220/1-1031 SPEKCAQQRQ KRLNSASQRS SSLPPSNRKS STPTKREIML TPVTVAYSPK ENSTTRP00000015046/1-1024 SPEKGAQQRQ KRFNSASQRS SSLPPSNRKS STPTKREIML TPVTVAYSPK ENSBTAP00000011147/1-1029 SPERGAQQRQ KRFNSASQRS SSLPPSNRKS NTPTKREIML TPVTMAYSPK bmy_01468T0/1-1208 SPEKGAQQRQ KRFNSASQRS SSLPPSNRKS STPTKREIML TPVTVAYSPK BACU013650/1-1186 SPEKGAQQRQ KRFNSASQRS SSLPPSNRKS STPTKREIML TPVTVAYSPK 1101 1150 ENSP00000376220/1-1031 RSPKENLSPG FSHLLSKNES SPIRFDILLD DLDTVPVSTL QRTNPRKQLQ ENSTTRP00000015046/1-1024 RSPKENLSPG FSHLLSKNES SPIRFDILLD DLDTVPVSTV QRPNPRKQLQ ENSBTAP00000011147/1-1029 RSPKENLSPG FSHLLSKNES SPIRFDILLD DLDTVPVSTV QRSNPRKQLQ bmy_01468T0/1-1208 RSPKENLSPG FSHLLSKNES SPIRFDILLD DLDTVPVSTV QRPNPRKQLQ BACU013650/1-1186 RSPKENLSPG FSHLLSKNES SPIRFDILLD DLDTVPVSTV QRPNPRKQLQ 1151 1200 ENSP00000376220/1-1031 FLPLDDSEEK TYSEKATDNH VNHSSCPEPV PNGVKKVSVR TAWEKNKSVS ENSTTRP00000015046/1-1024 FLPLDDSEEK KYSEKTTDIH VNHSSSPEPL PSGVKKVSVR SAWEKNKSVS ENSBTAP00000011147/1-1029 FLPLDDSEEK KYSEKAPDIH VNHSSSPELL PNGAKKVSVR PAWEKNKSFS bmy_01468T0/1-1208 FLPLDDSEEK KYSERTTDIH VNHSSSPEPL PSGAKKVPVR SAWEKNKSVS BACU013650/1-1186 FLPLDDSEEK KYSERTTDIH VNHSSSPEPL PSGAKKVPVR SAWEKNKSVS 1201 1250 ENSP00000376220/1-1031 YEQCKPVSVT PQGNDFEYTA KIRTLAETER FFDELTKEKD QIEAALSRMP ENSTTRP00000015046/1-1024 YEQCKPAYVP PQGNDFEYTA KIRTLAETER FFDELTKEKD QIEAALSRMP ENSBTAP00000011147/1-1029 YEQCQPVSTA PQGNNFEYTA KIRTLAETER FFDELTKEKD QIEAALSRMP bmy_01468T0/1-1208 YEQCKPACVP PQGNDFEYTA KIRTLAETER FFDELTKEKD QIEAALSRMP BACU013650/1-1186 YEQCKPACVP PQGNDFEYTA KIRTLAETER FFDELTKEKD QIEAALSRMP 1251 1300 ENSP00000376220/1-1031 SPGGRITLQT RLNQEALEDR LERINRELGS VRMTLKKFHV LRTSANL ENSTTRP00000015046/1-1024 STGGRITLQT RLNQEALEDR LEKINRELGS VRMTLKKFHV LRTSANL ENSBTAP00000011147/1-1029 STGGRVTLQT RLNQEALEDR LEEINRELGS VRMTLKKFHV LRTSANL bmy_01468T0/1-1208 STGGRITLQT RLNQEALEDR LEKINRELGS VRMTLKKFHV LRTSANL BACU013650/1-1186 STGGRITLQT RLNQEALEDR LEKINRELGS VRMTLKKFHV LRTSANL