KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:11 2014 Check: 00 .. Name: ENSTTRP00000000454/1-780 Len: 900 Check: 9563 Weight: 1.00 Name: ENSP00000366557/1-848 Len: 900 Check: 1971 Weight: 1.00 Name: ENSBTAP00000011148/1-781 Len: 900 Check: 7392 Weight: 1.00 Name: bmy_12051T0/1-751 Len: 900 Check: 2781 Weight: 1.00 Name: BACU014856/1-692 Len: 900 Check: 4027 Weight: 1.00 // 1 50 ENSTTRP00000000454/1-780 MTAMVESLMQ RDTV---DAA DNTSGPEPGS CPFARCRGST EPPVLARSSQ ENSP00000366557/1-848 MTATVENLTF QKDTLGNAVD KNTSRLELRS YSLAGRHGST EPLVLAWSSQ ENSBTAP00000011148/1-781 ---------- ---------- ---------- ---------- ---------- bmy_12051T0/1-751 ---------- ---------- ---------- ---------- ---------- BACU014856/1-692 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000454/1-780 --------SL RTWECAPDAP EPTRLPAGQS TPHLTCNSTP YSNRGSEDAQ ENSP00000366557/1-848 FRRLTWGCAL DALHRSPCVA ASQHGVTHLI RSSRTPHSTR ---CRKEDAQ ENSBTAP00000011148/1-781 ---------- ---------- ----AGSQHS SPHLQLQRVP ---GSEEDAQ bmy_12051T0/1-751 ---------- ---------- ---------- -KRRCLRHGA ---GGRSKVT BACU014856/1-692 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000454/1-780 PGYHRNDVAS VTAREGGQRS LQAFPLPVPG SSLL-ESFAV RASTLGPFL- ENSP00000366557/1-848 PGHHGNGAAS VTAQARGQRS VLQVPLPVPR SCLFSESFVV SVSSQSRFLA ENSBTAP00000011148/1-781 PGYHRNDVDS VTARERGQKS LQPVPLPVPG SRLLSESCAV WASPWGR-CS bmy_12051T0/1-751 PASSASR--- ---------- --------SG IQLVGELCGV GEGS-GP-IC BACU014856/1-692 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000000454/1-780 ---GSRGRLS AVAAMAASTA AGKQRIPKVA KVKNKAPAEV QITAEQLLRE ENSP00000366557/1-848 SVPGTGVQRS TAADMAASTA AGKQRIPKVA KVKNKAPAEV QITAEQLLRE ENSBTAP00000011148/1-781 VVPGS--PAV AAAAMAASTA AGKQRIPKVA KVKNKAPAEV QITAEQLLRE bmy_12051T0/1-751 GVSGS--PES PAAAMAASTA AGKQRIPKVA KVKNKAPAEV QITAEQLLRE BACU014856/1-692 ---------- ----MAASTA AGKQRIPKVA KVKNKAPAEV QITAEQLLRE 201 250 ENSTTRP00000000454/1-780 AKERELELLP PPPQQKITDE EELNDYKLRK RKTFEDNIRK NRTVISNWIK ENSP00000366557/1-848 AKERELELLP PPPQQKITDE EELNDYKLRK RKTFEDNIRK NRTVISNWIK ENSBTAP00000011148/1-781 AKERELELLP PPPQQKITDE EELNDYKLRK RKTFEDNIRK NRTVISNWIK bmy_12051T0/1-751 AKERELELLP PPPQQKITDE EELNDYKLRK RKTFEDNIRK NRTVISNWIK BACU014856/1-692 AKERELELLP PPPQQKITDE EELNDYKLRK RKTFEDNIRK NRTVISNWIK 251 300 ENSTTRP00000000454/1-780 YAQWEESLKE IQRARSIYER ALDVDYRNIT LWLKYAEMEM KNRQVNHARN ENSP00000366557/1-848 YAQWEESLKE IQRARSIYER ALDVDYRNIT LWLKYAEMEM KNRQVNHARN ENSBTAP00000011148/1-781 YAQWEESLKE IQRARSIYER ALDVDYRNIT LWLKYAEMEM KNRQVNHARN bmy_12051T0/1-751 YAQWEESLKE IQRARSIYER ALDVDYRNIT LWLKYAEMEM KNRQVNHARN BACU014856/1-692 YAQWEESLKE IQRARSIYER ALDVDYRNIT LWLKYAEMEM KNRQVNHARN 301 350 ENSTTRP00000000454/1-780 IWDRAITTLP RVNQFWYKYT YMEEMLGNMA GARQMFERWM EWQPEXXXXX ENSP00000366557/1-848 IWDRAITTLP RVNQFWYKYT YMEEMLGNVA GARQVFERWM EWQPEEQAWH ENSBTAP00000011148/1-781 IWDRAITTLP RVNQFWYKYT YMEEMLGNIA GARQVFERWM EWRPEEQAWH bmy_12051T0/1-751 IWDRAITTLP RVNQFWYKYT YMEEMLGNMA GARQVFERWM EWQPEEQAWH BACU014856/1-692 IWDRAITTLP RVNQFWYKYT YMEEMLGNMA GARQVFERWM EWQPEEQAWH 351 400 ENSTTRP00000000454/1-780 XXXXXXXXXX XXXXXXXXXX XXV------- ---------- ---------- ENSP00000366557/1-848 SYINFELRYK EVDRARTIYE RFV------- ---------- ---------- ENSBTAP00000011148/1-781 SYINFELRYK EVDRARTIYE RYI------- ---------- ---------- bmy_12051T0/1-751 SYINFELRYK EVDRARTIYE RYILWTGWSE KKFVVWIIES FPVRLWSVYT BACU014856/1-692 SYINFELRYK EVDRARTIYE RYI------- ---------- ---------- 401 450 ENSTTRP00000000454/1-780 -------LVH PD-------- -VKNWIKYAR FEEKHGYFAH ARKVYERAVE ENSP00000366557/1-848 -------LVH PD-------- -VKNWIKYAR FEEKHAYFAH ARKVYERAVE ENSBTAP00000011148/1-781 ---HSLVLVH PD-------- -VKNWIKYAR FEEKHGYFAH ARKVYERAVE bmy_12051T0/1-751 LALTLWFLVE GDILRPWPLQ RVLNWIKYAR FEEKHGYFAH ARKVYERAVE BACU014856/1-692 -------LLT G--------- -TQNWIKYAR FEEKHGYFAH ARKVYERAVE 451 500 ENSTTRP00000000454/1-780 FFGDEHMDEH LYVAFAKFEE NQKEFERVRV IYKYALDRIS KQEAQELFKN ENSP00000366557/1-848 FFGDEHMDEH LYVAFAKFEE NQKEFERVRV IYKYALDRIS KQDAQELFKN ENSBTAP00000011148/1-781 FFGDEHMDEH LYVAFAKFEE NQKEFERVRV IYKYALDRIS KQEAQELFKN bmy_12051T0/1-751 FFGDEHMDEH LYVAFAKFEE NQKEFERVRV IYKYALDRIS KQEAQELFKN BACU014856/1-692 FFGDEHMDEH LYVAFAKFEE NQKEFERVRV IYKYALDRIS KQEAQELFKN 501 550 ENSTTRP00000000454/1-780 YTIFEKKFGD RRGIEDIIVS KRRFQYEEEV KANPHNYDAW FDYLRLVESD ENSP00000366557/1-848 YTIFEKKFGD RRGIEDIIVS KRRFQYEEEV KANPHNYDAW FDYLRLVESD ENSBTAP00000011148/1-781 YTIFEKKFGD RRGIEDIIVS KRRFQYEEEV KANPHNYDAW FDYLRLVESD bmy_12051T0/1-751 YTVFEKKFGD RRGIEDIIVS KRRFQYEEEV K--------- ---------- BACU014856/1-692 YTVFEKKFGD RRGIEDIIVS KRRFQYEEEV KANPHNYDAW FDYLRLVESD 551 600 ENSTTRP00000000454/1-780 AEAETVREVY ERAIANVPPV QEKRHWKRYI YLWINYALYE ELEAKDPERT ENSP00000366557/1-848 AEAEAVREVY ERAIANVPPI QEKRHWKRYI YLWINYALYE ELEAKDPERT ENSBTAP00000011148/1-781 AEAETVREVY ERAIANVPPV QEKRHWKRYI YLWINYALYE ELEAKDPERT bmy_12051T0/1-751 ---------- ---------- -EKRHWKRYI YLWINYALYE ELEAKDPERT BACU014856/1-692 AEAETVREVY ERAIANVPPV QEKRHWKRYI YLWINYALYE ELEAKDPERT 601 650 ENSTTRP00000000454/1-780 RQVYQASLEL IPHKKFTFAK MWLLYAQFEI RQKNLPFARR ALGTSIGKCP ENSP00000366557/1-848 RQVYQASLEL IPHKKFTFAK MWILYAQFEI RQKNLSLARR ALGTSIGKCP ENSBTAP00000011148/1-781 RQVYQASLEL IPHKKFTFAK MWLLYAQFEI RQKNLPFARR ALGTSIGKCP bmy_12051T0/1-751 RQVYQASLEL IPHKKFTFAK MWLLYAQFEI RQKNLPFARR ALGTSIGKCP BACU014856/1-692 RQVYQASLEL IPHKKFTFAK MWLLYAQFEI RQKNLPFARR ALGTSIGKCP 651 700 ENSTTRP00000000454/1-780 KNKLFKGYIE LELQLREFDR CRKLYEKFLE FGPENCTSWI KFAELETILG ENSP00000366557/1-848 KNKLFKVYIE LELQLREFDR CRKLYEKFLE FGPENCTSWI KFAELETILG ENSBTAP00000011148/1-781 KNKLFKGYIE LELQLREFDR CRKLYEKFLE FGPENCTSWI KFAELETILG bmy_12051T0/1-751 KNKLFKGYIE LELQLREFDR CRKLYEKFLE FGPENCTSWI KFAELETILG BACU014856/1-692 KNKLFKGYIE LELQLREFDR CRKLYEKFLE FGPENCTSWI KFAELETILG 701 750 ENSTTRP00000000454/1-780 DIERARAIYE LAISQPRLDM PEVLWKSYID FEIEQEETER TRNLYRRLLQ ENSP00000366557/1-848 DIDRARAIYE LAISQPRLDM PEVLWKSYID FEIEQEETER TRNLYRRLLQ ENSBTAP00000011148/1-781 DIERARAIYE LAISQPRLDM PEVLWKSYID FEIEQEETER TRNLYRRLLQ bmy_12051T0/1-751 DIERARAIYE LAISQPRLDM PEVLWKSYID FEIEQEETER TRNLYRRLLQ BACU014856/1-692 DIERARAIYE LAISQPRLDM PEVLWKSYID FEIEQEETER TRNLYRRLLQ 751 800 ENSTTRP00000000454/1-780 RTQHVKVWIS FAQFELSSGK EGSLAKCRQI YEEANKTMRN CEEKEERLML ENSP00000366557/1-848 RTQHVKVWIS FAQFELSSGK EGSLTKCRQI YEEANKTMRN CEEKEERLML ENSBTAP00000011148/1-781 RTQHVKVWIS FAQFELSSGK EGSLAKCRQI YEEANKTMRN CEEKEERLML bmy_12051T0/1-751 RTQHVKVWIS FAQFELSSGK EGSLAKCRQI YEEANKSMRN CEEKEERLML BACU014856/1-692 RTQHVKVWIS FAQFELSSGK EGSLAKCRQI YEEANKTMRN CEEKEERLML 801 850 ENSTTRP00000000454/1-780 LESWRSFEDE FGTVSDKERV DQLMPEKVKK RRKVQADDG- ---------- ENSP00000366557/1-848 LESWRSFEEE FGTASDKERV DKLMPEKVKK RRKVQTDDGS DAGWEEYFDY ENSBTAP00000011148/1-781 LESWRNFEDE FGTASDKERV DKLMPEKVKK RRKVQADDGS DAGWEEYYDY bmy_12051T0/1-751 LESWRSFEDE FGTVSDKERV DKLMPEKVKK RRKVQADDGS DAGWEEYYDY BACU014856/1-692 LESWRSFEDE FGTVSDKERV DKLMPEKVKK RRKVQADDGS DAGWEEYYDY 851 900 ENSTTRP00000000454/1-780 ---------- ---------- ---------- ---------- ---------- ENSP00000366557/1-848 IFPEDAANQP NLKLLAMAKL WKKQQQEKED AEHHPDEDVD ESES------ ENSBTAP00000011148/1-781 IFPEDAANQP NLKLLAMAKL WKKQQQEKEA GEQDPDTDTA EREAGPSCSY bmy_12051T0/1-751 IFPEDAANQP NLKLLAMAKL WKKQQQEKEP GEQDPDADVA EQESGPSCSC BACU014856/1-692 IFPEDAANQP NLKLLAMAKL WKKQQQEKEP GEQDPDADVA EQESGPSSSC