KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:12 2014 Check: 00 .. Name: ENSBTAP00000011172/1-228 Len: 322 Check: 3623 Weight: 1.00 Name: ENSTTRP00000012423/1-293 Len: 322 Check: 4369 Weight: 1.00 Name: bmy_20549T0/1-279 Len: 322 Check: 8540 Weight: 1.00 Name: BACU010895/1-240 Len: 322 Check: 1604 Weight: 1.00 // 1 50 ENSBTAP00000011172/1-228 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012423/1-293 VSVRALVAAC VTSEWGRRNG RGKEKGWGWG GSRGAGQSVN RDGGVRVCCS bmy_20549T0/1-279 ---------- ---------- ---MLSWSGG SSFVGGVSDD YLGGL---GH BACU010895/1-240 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000011172/1-228 ---------- ---------- ---------M EKLCSENEAK PENQGKMENK ENSTTRP00000012423/1-293 QCSTGLEKEE EPVQNTRRSV KDRKRKGLNM EKLCSENEGK PENQGKMENK bmy_20549T0/1-279 GVLSDIPRQQ QAEECEDLSG GQEKEGTLNM EKLCSENEGK PENQGKMENK BACU010895/1-240 ---------- ---------- ---------M EKLCSENEGK PENQGKMENK 101 150 ENSBTAP00000011172/1-228 EQPLDAGKPG AACTKEDKET LENKGRTDHK GQT-DEEVLK VKERPENETK ENSTTRP00000012423/1-293 GQPPDAGKPG VACTVEDKEK LENKGRIDLK GKTEDEEVLK DKEKPDSEAK bmy_20549T0/1-279 EQPLDAGKPG VACTVEDKEK LENKGRTDLK GKTEDEEVLK DKEKPESEAK BACU010895/1-240 EQPLDAGKLG VACTVEDKEK LENKGRTDLK GKTEDEEVLK DKEKPESEAK 151 200 ENSBTAP00000011172/1-228 PKEENPESQG KPVSEEKAKE SE-------- ------AESE EKPESEGKPV ENSTTRP00000012423/1-293 PKEG------ KPVSEGKPKE GK-------- ---------- --PESEGKPV bmy_20549T0/1-279 PKEGNPEXQX KPVSEGKPKE GK-------- ------PESE XKPVSEGKPV BACU010895/1-240 PKEGNPESQG KPVSEGKPKE GKPEKPESEA KPKERNPESE GKPVSEGKPV 201 250 ENSBTAP00000011172/1-228 SEGKPKEDKP ARDPREPRAG GKRPAGEDVP RKAKRKTNKG LAQCLKEYKE ENSTTRP00000012423/1-293 SEGKPKEEKP A---SEPRAA GKRPAGDDVP RKAKRKTNKG LAQCLKEYKE bmy_20549T0/1-279 SEGKPKEEKP A---SEPRAA GKRPAGDDVP RKAKRKTNKG LAQCLKEYKE BACU010895/1-240 SEGKPKEEKP A---SEPRAA GKRPAGDDVP RKAKRKTNKG LAQCLKEYKE 251 300 ENSBTAP00000011172/1-228 AIHDMHLSNE EMIREFDEMA RVEDEVKKTR QKLGGFMWMQ KSLQDPFHPR ENSTTRP00000012423/1-293 AIHDMHLSNE EMIREFDEMA RVEDEVKKTR QKLGGFMWMQ KSLQDPFHPR bmy_20549T0/1-279 AIHDMHLSNE EMIREFDEMA RVEDEVKKTR QKLGGFMWMQ KSLQDPFHPR BACU010895/1-240 AIHDMHLSNE EMIREFDEMA RVEDEVKKTR QKLGGFMWMQ KSLQDPFHPR 301 350 ENSBTAP00000011172/1-228 GPRELRGGCR APQRGFEDIP FV ENSTTRP00000012423/1-293 GPRELRGGCR APQRGFEDIP FV bmy_20549T0/1-279 GPRELRGGCR APQRGFEDIP FV BACU010895/1-240 GPRELRGGCR APQRGFEDIP FV