KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:14 2014 Check: 00 .. Name: ENSTTRP00000005204/1-1372 Len: 1470 Check: 5481 Weight: 1.00 Name: ENSBTAP00000011195/1-1372 Len: 1470 Check: 7450 Weight: 1.00 Name: BACU010344/1-1397 Len: 1470 Check: 9752 Weight: 1.00 Name: bmy_08434T0/1-1364 Len: 1470 Check: 7120 Weight: 1.00 Name: ENSP00000343909/1-1370 Len: 1470 Check: 3617 Weight: 1.00 // 1 50 ENSTTRP00000005204/1-1372 MDPSDFPSPF DPLTLPEKPL AGDLPVDMEF GEDLLESQTA PTRGWVPPGP ENSBTAP00000011195/1-1372 MDPSDFPSPF DPLTLPEKPL AGDLPVDMEF GEDLLESQTA PTRGWAPPGP BACU010344/1-1397 MDPSDFPSPF DPLTLPEKPL AGDLPVDMEF GEDLLESQTA PTRGWAPPGP bmy_08434T0/1-1364 MDPSDFPSPF DPLTLPEKPL AGDLPVDMEF GEDLLESQTA PTRGWAPPGP ENSP00000343909/1-1370 MDPSDFPSPF DPLTLPEKPL AGDLPVDMEF GEDLLESQTA PTRGWAPPGP 51 100 ENSTTRP00000005204/1-1372 SPSSGTLDLL DTPAGLEKDP GVLDGATELL GLGGLLYKAP SPPEVDHGPE ENSBTAP00000011195/1-1372 SPSSGALDLL DTPAGLEKDP GVLDGATELL GLGGLLYKAP SPPEVDHGPE BACU010344/1-1397 SPSSGALDLL DTPAGLEKDP GVLDGATELL GLGGLLYKAP SPPEVDHGPE bmy_08434T0/1-1364 SPSSGALDLL DTPAGLEKDP GVLDGATELL GLGGLLYKAP SPPEVDHGPE ENSP00000343909/1-1370 SPSSGALDLL DTPAGLEKDP GVLDGATELL GLGGLLYKAP SPPEVDHGPE 101 150 ENSTTRP00000005204/1-1372 GTLAWDAGDQ TLEPGPGGQT PEVVPPDPGA GANPSSPEGL LEPLAPDSPI ENSBTAP00000011195/1-1372 GTLAWDASDQ TLEPGPGGRT PEVVPPDPGA GANPSSPEGL LEPLAPDSPI BACU010344/1-1397 GTLAWDAGDQ TLEPGPGGQT PEVVPPDPGA GANPSSPEGL LEPLAPDSPI bmy_08434T0/1-1364 GTLAWDAGDQ TLEPGPGGQT PEVVPPDPGA GANPSSPEGL LEPLAPDSPI ENSP00000343909/1-1370 GTLAWDAGDQ TLEPGPGGQT PEVVPPDPGA GANSCSPEGL LEPLAPDSPI 151 200 ENSTTRP00000005204/1-1372 TLQSPHIEEE ETTSIATGRR GSPGQEEELP QGQPQSPNGP PSPSVGETLG ENSBTAP00000011195/1-1372 TLQSPHIEEE ETTSIATGRR GSPGQEEELP QGQPQSPNGP PSPSVGETLG BACU010344/1-1397 TLQSPHIEEE ETTSIATGRR GSPGQEEELP QGQPQSPNGP PSPSVGETLG bmy_08434T0/1-1364 TLQSPHIEEE ETTSIATGRR GSPGQEEELP QGQPQSPNGP PSPSVGETLG ENSP00000343909/1-1370 TLQSPHIEEE ETTSIATARR GSPGQEEELP QGQPQSPNAP PSPSVGETLG 201 250 ENSTTRP00000005204/1-1372 DGINSSQTKP GGPSPPAHPS LPGDGLTGKA SEKPPERVQK RSERVRRVEP ENSBTAP00000011195/1-1372 DGINSSQTKP GSPSPPAHPS LPGDGLTGKA SEKPPER--K RSERVRRVEP BACU010344/1-1397 DGINSSQTKP GGPSPPAHPS LPGDGLTGKA SEKPPERVQK RSERVRSLEP bmy_08434T0/1-1364 DGINSSQTKP GGPSPPAHPS LPGDGLTGKA SEKPPERVQK RSERVRRVEP ENSP00000343909/1-1370 DGINSSQTKP GGSSPPAHPS LPGDGLTAKA SEKPPER--K RSERVRRAEP 251 300 ENSTTRP00000005204/1-1372 PKXXXXXXXX XXPVSDEDSD AMVDDPNDED FVPFRPRRSP RMSLRSSVAQ ENSBTAP00000011195/1-1372 PKPEVVDSTE SIPVSDEDSD AMVDDPNDED FVPFRPRRSP RMSLRSSVAQ BACU010344/1-1397 PKPEVVDSTE SIPVSDEDSD AMVDDPNDED FVPFRPRRSP RMSLRSSVAQ bmy_08434T0/1-1364 PKPEVVDSTE SIPVSDEDSD AMVDDPNDED FVPFRPRRSP RMSLRSSVAQ ENSP00000343909/1-1370 PKPEVVDSTE SIPVSDEDSD AMVDDPNDED FVPFRPRRSP RMSLRSSVSQ 301 350 ENSTTRP00000005204/1-1372 RTGRSAVGTK MTCAHCRTPL QKGQTAYQRK GLPQLFCSSS CLTTFSKKPS ENSBTAP00000011195/1-1372 RAGRSSVGTK MTCAHCRTPL QKGQTAYQRK GLPQLFCSSS CLTTFSKKPS BACU010344/1-1397 RAGRSAVGTK MTCAHCRTPL QKGQTAYQRK GLPQLFCSSS CLTTFSKKPS bmy_08434T0/1-1364 RAGRSAVGTK MTCAHCRTPL QKGQTAYQRK GLPQLFCSSS CLTTFSKKPS ENSP00000343909/1-1370 RAGRSAVGTK MTCAHCRTPL QKGQTAYQRK GLPQLFCSSS CLTTFSKKPS 351 400 ENSTTRP00000005204/1-1372 GKKTCTFCKK EIWNTKDSVV AQTGSGGSFH EFCTSVCLSL YEAQQQRPIP ENSBTAP00000011195/1-1372 GKKTCTFCKK EIWNTKDSVV AQTGSGGSFH EFCTSVCLSL YEAQQQRPIP BACU010344/1-1397 GKKTCTFCKK EIWNTKDSVV AQTGSGGSFH EFCTSVCLSL YEAQQQRPIP bmy_08434T0/1-1364 GKKTCTFCKK EIWNTKDSVV AQTGSGGSFH EFCTSVCLSL YEAQQQRPIP ENSP00000343909/1-1370 GKKTCTFCKK EIWNTKDSVV AQTGSGGSFH EFCTSVCLSL YEAQQQRPIP 401 450 ENSTTRP00000005204/1-1372 QSGDPADATR CSICQ-TGEX XXXXXXXXXX XXXXXXX--- ---------- ENSBTAP00000011195/1-1372 QSGDLADATR CSICQKTGEV LHEVSNGSVV HRLCSNS--- ---------- BACU010344/1-1397 QSGDPADATR CSICQKTGEV LHEVSNGSVV HRLCSDSCFS KFRANKGLKT bmy_08434T0/1-1364 QSGDPADATR CSICQKTGEV LHEVSNGSVV HRLCSDS--- ---------- ENSP00000343909/1-1370 QSGDPADATR CSICQKTGEV LHEVSNGSVV HRLCSDS--- ---------- 451 500 ENSTTRP00000005204/1-1372 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011195/1-1372 ---------- ---------- ---------- ---------- ---------- BACU010344/1-1397 NCCDQCGAYI YTKTGSPGPE LLFHEGQQKR FCNTTCLGAY KKVLHEVSNG bmy_08434T0/1-1364 ---------- ---------- ---------- ---------- ---------- ENSP00000343909/1-1370 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000005204/1-1372 ---------- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011195/1-1372 ---------- CFSKFRANKG LKTNCCDQCG AYIYTKTGSP GPELLFHEGQ BACU010344/1-1397 SVVHRLCSDS CFSKFRANKG LKTNCCDQCG AYIYTKTGSP GPELLFHEGQ bmy_08434T0/1-1364 ---------- CFSKFRANKG LKTNCCDQCG AYIYTKTGSP GPELLFHEGQ ENSP00000343909/1-1370 ---------- CFSKFRANKG LKTNCCDQCG AYIYTKTGSP GPELLFHEGQ 551 600 ENSTTRP00000005204/1-1372 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011195/1-1372 QKRFCNTTCL GAYKKKNTRV YPCVWCKTLC KNFEMLSHVD RNGKTSLFCS BACU010344/1-1397 QKRFCNTTCL GAYKKKNTRV YPCVWCKTLC KNFEMLSHVD RNGKTSLFCS bmy_08434T0/1-1364 QKRFCNTTCL GAYKKKNTRV YPCVWCKTLC KNFEMLSHVD RNGKTSLFCS ENSP00000343909/1-1370 QKRFCNTTCL GAYKKKNTRV YPCVWCKTLC KNFEMLSHVD RNGKTSLFCS 601 650 ENSTTRP00000005204/1-1372 XXXXXXXXXX XXXXXXPPRP CSFCRRSLSD PCYYNKVDRT VYQFCSPSCW ENSBTAP00000011195/1-1372 LCCTTSYKVK QAGLTGPPRP CSFCRRSLSD PCYYNKVDRT VYQFCSPSCW BACU010344/1-1397 LCCTTSYKVK QAGLTASLTP VTTTRLIAQS TSSAAPAAGP SSRYSKP--W bmy_08434T0/1-1364 LCCTTSYKVK QAGL------ ---------- ---------T VYQFCSPSCW ENSP00000343909/1-1370 LCCTTSYKVK QAGLTGPPRP CSFCRRSLSD PCYYNKVDRT VYQFCSPSCW 651 700 ENSTTRP00000005204/1-1372 TK-------F QRTSPEGGIH LSCHYCHSLF SGKPEVLDW- ---------- ENSBTAP00000011195/1-1372 TK-------F QRTSPEGGIH LSCHYCHSLF SGKPEVLDW- ---------- BACU010344/1-1397 TRDKGCGDVE RRTSPEGGIH LSCHYCHSLF SGKPEVLDW- ---------- bmy_08434T0/1-1364 TK-------F QRTSPEGGIH LSCHYCHSLF SGKPEVLDWQ VQMSQPCPPH ENSP00000343909/1-1370 TK-------F QRTSPEGGIH LSCHYCHSLF SGKPEVLDW- ---------- 701 750 ENSTTRP00000005204/1-1372 -----QDQVF QFCCRDCCED FKRLRGVVSQ CEHCRQEKLL HEKLRFSGVE ENSBTAP00000011195/1-1372 -----QDQVF QFCCRDCCED FKRLRGVVSQ CEHCRQEKLL HEKLRFSGVE BACU010344/1-1397 -----QDQVF QFCCRDCCED FKRLRGVVSQ CEHCRQEKLL HEKLRFSGVE bmy_08434T0/1-1364 PVPPSQDQVF QFCCRDCCED FKRLRGVVSQ CEHCRQEKLL HEKLRFSGVE ENSP00000343909/1-1370 -----QDQVF QFCCRDCCED FKRLRGVVSQ CEHCRQEKLL HEKLRFSGVE 751 800 ENSTTRP00000005204/1-1372 KSFCSEGCVL LYKQDFTKKL GLCCITCTYC SQTCQRGVTE QLDGSTWDFC ENSBTAP00000011195/1-1372 KSFCSEGCVL LYKQDFTKKL GLCCITCTYC SQTCQRGVTE QLDGSTWDFC BACU010344/1-1397 KSFCSEGCVL LYKQDFTKKL GLCCITCTYC SQTCQRGVTE QLDGSTWDFC bmy_08434T0/1-1364 KSFCSEGCVL LYKQDFTKKL GLCCITCTYC SQTCQRGVTE QLDGSTWDFC ENSP00000343909/1-1370 KSFCSEGCVL LYKQDFTKKL GLCCITCTYC SQTCQRGVTE QLDGSTWDFC 801 850 ENSTTRP00000005204/1-1372 SEDCKSKYLL XXXXAARCHA CKRQGKLLET IHWRGQIRHF CNQQCLLRFY ENSBTAP00000011195/1-1372 SEDCKSKYLL WYCKAARCHA CKRQGKLLET IHWRGQIRHF CNQQCLLRFY BACU010344/1-1397 SEDCKSKYLL WYCKAARCHA CKRQGKLLET IHWRGQIRHF CNQQCLLRFY bmy_08434T0/1-1364 SEDCKSKYLL WYCKAARCHA CKRQGKLLET IHWRGQIRHF CNQQCLLRFY ENSP00000343909/1-1370 SEDCKSKYLL WYCKAARCHA CKRQGKLLET IHWRGQIRHF CNQQCLLRFY 851 900 ENSTTRP00000005204/1-1372 SQQNQPNLDT QSGPESLLNS QSSEAKPQTP SQTKVENSNT VKTSEENGNL ENSBTAP00000011195/1-1372 SQQNQPNLDT QSGPESLLNS QSSEAKPQTP SQTKVENRNT IKTLQENGNL BACU010344/1-1397 SQQNQPNLDT QSGPESLLNT K--------- ---------- ---------- bmy_08434T0/1-1364 SQQNQPNLDT QSGPESLLNS QSSEAKPQTP SQTKVENSNT VKTSEENGNL ENSP00000343909/1-1370 SQQNQPNLDT QSGPESLLNS QSPESKPQTP SQTKVENSNT VRTPEENGNL 901 950 ENSTTRP00000005204/1-1372 GKIPVKIRTA PAAPT-PPPP PPPPATPRKN KAAMCKPLMQ NRGVSCKVEM ENSBTAP00000011195/1-1372 GKIPVKTRPA PAASTPPPPP PPPPAAPRKN KAAMCKPLMQ NRGVSCKVEM BACU010344/1-1397 ---------- ---------- ------PRKN KAAMCKPLMQ NRGVSCKVEM bmy_08434T0/1-1364 GKIPVKIRTA PAAPT-PPPP PPPPATPRKN KAAMCKPLMQ NRGVSCKVEM ENSP00000343909/1-1370 GKIPVKTRSA PTAPT--PPP PPPPATPRKN KAAMCKPLMQ NRGVSCKVEM 951 1000 ENSTTRP00000005204/1-1372 KSKGSQTEEW KPQVIVLPIP VPIFVPVPMH LYCQKVPVPF SMPIPVPVPM ENSBTAP00000011195/1-1372 KSKGSQTEEW KPQVIVLPIP VPIFVPVPMH LYCQKVPVPF SMPIPVPVPM BACU010344/1-1397 KSKGSQTEEW KPQVIVLPIP VPIFVPVPMH LYCQKVPVPF SMPIPVPVPM bmy_08434T0/1-1364 KSKGSQTEEW KPQVIVLPIP VPIFVPVPMH LYCQKVPVPF SMPIPVPVPM ENSP00000343909/1-1370 KSKGSQTEEW KPQVIVLPIP VPIFVPVPMH LYCQKVPVPF SMPIPVPVPM 1001 1050 ENSTTRP00000005204/1-1372 FLPTTLESTD KIVETIEELK VKIPSNPLEA DILAMAEMIA EAEELDKASS ENSBTAP00000011195/1-1372 FLPTTLESTD KIVETIEELK VKIPSNPLEA DILAMAEMIA EAEELDKASS BACU010344/1-1397 FLPTTLESTD KIVETIEELK VKIPSNPLEA DILAMAEMIA EAEELDKASS bmy_08434T0/1-1364 FLPTTLESTD KIVETIEELK VKIPSNPLEA DILAMAEMIA EAEELDKASS ENSP00000343909/1-1370 FLPTTLESTD KIVETIEELK VKIPSNPLEA DILAMAEMIA EAEELDKASS 1051 1100 ENSTTRP00000005204/1-1372 DLCDLVSNQS AEGLLEDCDL FGPARDDVLA MAVKMANVLD EPGQDLEADF ENSBTAP00000011195/1-1372 DLCDLVSNQS AEGLLEDCDL FGPARDDVLA MAVKMANVLD EPGQDLEADF BACU010344/1-1397 DLCDLVSNQS AEGLLEDCDL FGPARDDVLA MAVKMANVLD EPGQDLEADF bmy_08434T0/1-1364 DLCDLVSNQS AEGLLEDCDL FGPARDDVLA MAVKMANVLD EPGQDLEADF ENSP00000343909/1-1370 DLCDLVSNQS AEGLLEDCDL FGPARDDVLA MAVKMANVLD EPGQDLEADF 1101 1150 ENSTTRP00000005204/1-1372 PKNPLDINPS VDFLFDCGLV GPEDVSTEQD LPRTMRKGQK RLVLSESCSR ENSBTAP00000011195/1-1372 PKNPLDINPS VDFLFDCGLV GPEDVSTEQD LPRAMRKGQK RLVLSESCSR BACU010344/1-1397 PKNPLDINPS VDFLFDCGLV GPEDVSTEQD LPRTMRKGQK RLVLSESCSR bmy_08434T0/1-1364 PKNPLDINPS VDFLFDCGLV GPEDVSTEQD LPRTMRKGQK RLVLSESCSR ENSP00000343909/1-1370 PKNPLDINPS VDFLFDCGLV GPEDVSTEQD LPRTMRKGQK RLVLSESCSR 1151 1200 ENSTTRP00000005204/1-1372 DSMSSQPSCT GLNYSYGVNA WKCWVQSKYA NGETSKGDEL RFGPKPMRIK ENSBTAP00000011195/1-1372 DSMSSQPSCT GLNYSYGVNA WKCWVQSKYA NGETSKGDEL RFGPKPMRIK BACU010344/1-1397 DSMSSQPSCT GLNYSYGVNA WKCWVQSKYA NGETSKGDEL RFGPKPMRIK bmy_08434T0/1-1364 DSMSSQPSCT GLNYSYGVNA WKCWVQSKYA NGETSKGDEL RFGPKPMRIK ENSP00000343909/1-1370 DSMSSQPSCT GLNYSYGVNA WKCWVQSKYA NGETSKGDEL RFGPKPMRIK 1201 1250 ENSTTRP00000005204/1-1372 EDILACSAAE LNYGLAQFVR EITRPNGERY EPDSIYYLCL GIQQYLLENN ENSBTAP00000011195/1-1372 EDILACSAAE LNYGLAQFVR EITRPNGERY EPDSIYYLCL GIQQYLLENN BACU010344/1-1397 EDILACSAAE LNYGLAQFVR EITRPNGERY EPDSIYYLCL GIQQYLLENN bmy_08434T0/1-1364 EDILACSAAE LNYGLAQFVR EITRPNGERY EPDSIYYLCL GIQQYLLENN ENSP00000343909/1-1370 EDILACSAAE LNYGLAQFVR EITRPNGERY EPDSIYYLCL GIQQYLLENN 1251 1300 ENSTTRP00000005204/1-1372 RMVNIFTDLY YLTFVQELNK SLSTWQPTLL PNNTVFSRVE EEHLWECKQL ENSBTAP00000011195/1-1372 RMVNIFTDLY YLTFVQELNK SLSTWQPTLL PNNTVFSRVE EEHLWECKQL BACU010344/1-1397 RMVNIFTDLY YLTFVQELNK SLSTWQPTLL PNNTVFSRVE EEHLWECKQL bmy_08434T0/1-1364 RMVNIFTDLY YLTFVQELNK SLSTWQPTLL PNNTVFSRVE EEHLWECKQL ENSP00000343909/1-1370 RMVNIFTDLY YLTFVQELNK SLSTWQPTLL PNNTVFSRVE EEHLWECKQL 1301 1350 ENSTTRP00000005204/1-1372 GVYSPFVLLN TLMFFNTKFF GLQTAEEHMQ LSFTNVVRQS RKCTTPRGTT ENSBTAP00000011195/1-1372 GVYSPFVLLN TLMFFNTKFF GLQTAEEHMQ LSFTNVVRQS RKCTTPRGTT BACU010344/1-1397 GVYSPFVLLN TLMFFNTKFF GLQKAEEHMQ LSFTNVVRQS RKCTTPRGTT bmy_08434T0/1-1364 GVYSPFVLLN TLMFFNTKFF GLQTAEEHMQ LSFTNVVRQS RKCTTPRGTT ENSP00000343909/1-1370 GVYSPFVLLN TLMFFNTKFF GLQTAEEHMQ LSFTNVVRQS RKCTTPRGTT 1351 1400 ENSTTRP00000005204/1-1372 KVVSIRYYAP VRQRKGRDTG PGKRKREDEA PILEQRENRM NPLRCPVKFY ENSBTAP00000011195/1-1372 KVVSIRYYAP VRQRKGRDTG PGKRKRDDEA PILEQRENRM NPLRCPVKFY BACU010344/1-1397 KVVSIRYYAP VRQRKGRDTG PGKRKREDEA PILEQRENRM NPLRCPVKFY bmy_08434T0/1-1364 KVVSIRYYAP VRQRKGRDTG PGKRKREDEA PILEQRENRM NPLRCPVKFY ENSP00000343909/1-1370 KVVSIRYYAP VRQRKGRDTG PGKRKREDEA PILEQRENRM NPLRCPVKFY 1401 1450 ENSTTRP00000005204/1-1372 EFYLSKCPES LRTRNDVFYL QPERSCIAES PLWYSVIPMD RSMLESMLNR ENSBTAP00000011195/1-1372 EFYLSKCPES LRTRNDVFYL QPERSCIAES PLWYSVIPMD RSMLESMLNR BACU010344/1-1397 EFYLSKCPES LRTRNDVFYL QPERSCIAES PLWYSVIPMD RSMLESMLNR bmy_08434T0/1-1364 EFYLSKCPES LRTRNDVFYL QPERSCIAES PLWYSVIPMD RSMLESMLNR ENSP00000343909/1-1370 EFYLSKCPES LRTRNDVFYL QPERSCIAES PLWYSVIPMD RSMLESMLNR 1451 1500 ENSTTRP00000005204/1-1372 ILAVREIYEE LGRPGEEDLD ENSBTAP00000011195/1-1372 ILAVREIYEE LGRPGEEDLD BACU010344/1-1397 ILAVREIYEE LGRPGEEDLD bmy_08434T0/1-1364 ILAVREIYEE LGRPGEEDLD ENSP00000343909/1-1370 ILAVREIYEE LGRPGEEDLD