KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:15 2014 Check: 00 .. Name: ENSP00000386229/1-566 Len: 637 Check: 9313 Weight: 1.00 Name: ENSBTAP00000011200/1-564 Len: 637 Check: 82 Weight: 1.00 Name: bmy_08377T0/1-637 Len: 637 Check: 7621 Weight: 1.00 Name: ENSTTRP00000016522/1-499 Len: 637 Check: 773 Weight: 1.00 // 1 50 ENSP00000386229/1-566 ---------- ---------- ---------- ---------- -----MPGKP ENSBTAP00000011200/1-564 ---------- ---------- ---------- ---------- -----MPGKP bmy_08377T0/1-637 DVRARRSGAR LSLCCLPFAV QALARAAHSP HGGRPPQRGP VNSSGMPGKP ENSTTRP00000016522/1-499 ---------- ---------- ---------- ---------- -----MPGKP 51 100 ENSP00000386229/1-566 KHLGVPNGRM VLAVSDGELS STTGPQGQGE GRGSSLSIHS LPSGPSSPFP ENSBTAP00000011200/1-564 KHLGVPNGRM VLAVSDGELS STTGPQGQGE GRGSSLSIHS LPSGPSSPFP bmy_08377T0/1-637 KHLGVPNGRM VLAVSDGELS STTGPQGQGE GRGSSLSIHS LPSGPSSPFP ENSTTRP00000016522/1-499 KHLGVPNGRM VVAVSDGELS STAGPQGQGE GRGSSLSIHS LPSGPSSPFP 101 150 ENSP00000386229/1-566 TEEQPVASWA LSFERLLQDP LGLAYFTEFL KKEFSAENVT FWKACERFQQ ENSBTAP00000011200/1-564 TEEQPVASWG LSFERLLQDP LGLAYFTEFL KKEFSAENVT FWKACERFQQ bmy_08377T0/1-637 TEEQPVASWG LSFERLLQDP LGLAYFTEFL KKEFSAENVT FWKACERFQQ ENSTTRP00000016522/1-499 TEEQPVASWG LSFERLLQDP LGLAYFTEFL KKEFSAENVT FWKACERFQQ 151 200 ENSP00000386229/1-566 IPASDTQQLA QEARNIYQEF LSSQALSPVN IDRQAWLGEE VLAEPRPDMF ENSBTAP00000011200/1-564 IPASDTQQLA QEARNIYQEF LSSQALSPVN IDRQAWLGEE VLAEPRPDMF bmy_08377T0/1-637 IPASDTQQLA QEARNIYQEF LSSQALSPVN IDRQAWLGEE VLAEPRPDMF ENSTTRP00000016522/1-499 IPASDTQQLA QEARNIYQEF LSSQALSPVN IDRQAWLGEE VLAEPRPDMF 201 250 ENSP00000386229/1-566 RAQQLQIFNL MKFDSYARFV KSPLYRECLL AEAEGRPLRE PGSSRLGSPD ENSBTAP00000011200/1-564 RAQQLQIFNL MKFDSYARFV KSPLYRECLL AEAEGRPLRE PGSWRPGSPD bmy_08377T0/1-637 RAQQLQIFNL MKFDSYARFV KSPLYRECLL AEAEGRPLRE PGSSRLGSPD ENSTTRP00000016522/1-499 RAQQLQIFNL MKFDSYARFG LSPLYRECLL AEAEGRPLRE PGSSRLGSPD 251 300 ENSP00000386229/1-566 ATRKKPKLKP GKSLPLGVEE LGQLPPVEGP GGRPLRKSFR REL-GGTANA ENSBTAP00000011200/1-564 TTRKKPKLKP GKSLPLGVEE LGQLPPAE-- -GRPLRKSFR RELAGGAANT bmy_08377T0/1-637 ATRKKPKLKP GKSLPLGVEE LGQLPPAEGP GGRPLRMSFR RELGGGASNS ENSTTRP00000016522/1-499 ATRKKPKLKP GKSLPLGVEE LGQLPPAEGP GGRPLRLSFR R-LGGGASNS 301 350 ENSP00000386229/1-566 ALRRESQGSL NSSASLDLGF LAFVSSKSES HRKSLGSTEG ESESRPGKYC ENSBTAP00000011200/1-564 ALRRESQGSL NSSASLDLGY LAFASSKSES HRKSLGSSEG ENESRPGKYC bmy_08377T0/1-637 ALRRESQGSL NSSASLDLGF LAFVSSKSES HRKSLGSSEG DSESRPGKYC ENSTTRP00000016522/1-499 ALRRESQGSL NSSASLDLGF LAFVSSKSES HRKSLGSSEG ESESRPGKYC 351 400 ENSP00000386229/1-566 CVYLPDGTAS LALARPGLTI RDMLAGICEK RGLSLPDIKV YLVGNEQ-AL ENSBTAP00000011200/1-564 CVYLPDGTAS LALARPGLTI RDMLAGICEK RGLSLPDIKV YLVGNEQ-AL bmy_08377T0/1-637 CVYLPDGTAS LALARPGLTI RDMLAGICEK RGLSLPDIKV YLVGNEQKAL ENSTTRP00000016522/1-499 CVYLPDGTAS LALARPGLTI RDMLEGICEK RGLSLPDIKV YLVGNEQ-AL 401 450 ENSP00000386229/1-566 VLDQDCTVLA DQEVRLENRI TFELELTALE RVVRISAKPT KRLQEALQPI ENSBTAP00000011200/1-564 VLDQDCTVLA DQEVRLENRI TLELEVLALE RLVRISAKPT KRLQEALQPI bmy_08377T0/1-637 VLDQDCTVLA DQEVRLENRI TFELELAALE RVVRISAKPT KRLQEALQPI ENSTTRP00000016522/1-499 VLDQDCTVLA DQEVRLENRI TFELELAPLE RVVRISAKPT KRLQEALQPI 451 500 ENSP00000386229/1-566 LEKHGLSPLE VVLHRPGEKQ PLDLGKLVSS VAAQRLVLDT LP-------- ENSBTAP00000011200/1-564 LTKHGLSPQQ VVLRLPGEKQ PLDLEKLVSS VASQRLVLDT LP-------- bmy_08377T0/1-637 LAKHGLSPQQ VALRRPGEKQ PLDLRKLVSS VAAERLVLDT LPGTALAQEK ENSTTRP00000016522/1-499 LAKHGLSPQQ VSLRRPGEKQ PLDLRKLVSS VAAERLVLDA LP-------- 501 550 ENSP00000386229/1-566 ---------- ------GVKI SKARDKSPCR SQGCPPRTQD KATHPPPASP ENSBTAP00000011200/1-564 ---------- ------GVTI PQADDIPPCH SQGGPPRIQD KATNLPPPSL bmy_08377T0/1-637 GGPGERQTGT VALSAAGVKI PEAGDISPCC SQGGQPTIQD KAAHLPPLSL ENSTTRP00000016522/1-499 ---------- ------GVKI TEAGDISPCL SQGGPPTIQD KAAHLPPLSL 551 600 ENSP00000386229/1-566 SSLVKVPSSA TGKRQTCDIE GLVELLNRVQ SSGAHDQRGL LRKEDLVLPE ENSBTAP00000011200/1-564 NSLAQVPSSI TGKRQTCDIE GLVELLNRVQ SCGAHDQRGL LRKEDLVLPE bmy_08377T0/1-637 NSLAQAPSSI TGKRQTCDIE GLVELLNRVQ SSGAHDQRGL LRKEDLVLPE ENSTTRP00000016522/1-499 NSLAQAPSSI TGKRQTCDIE ---------- ---------- ---------- 601 650 ENSP00000386229/1-566 FLQLPAQGPS SEETPPQTKS AAQPIGGSLN STTDSAL ENSBTAP00000011200/1-564 FLQLPAQGPN SQQPPPQVES AAQPKGSASD STVHSAL bmy_08377T0/1-637 FLQLPAQGPN SQETPPQTES AAQPKGSPSD STVHSAL ENSTTRP00000016522/1-499 ---------- ---------- ---------- -------